assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022825.1_ASM2282v1	NC_017160	Yersinia pestis D182038, complete sequence	1	1638716-1638837	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	Orphan	CTTAATGCCAATATTAATCGACATAATCAATTG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	NA,NA|73aa|down_0|NC_017160.1_1639193_1639412_+	NA|685aa|up_9|NC_017160.1_1624899_1626954_+	PRK11054, helD, DNA helicase IV; Provisional	NA|155aa|up_8|NC_017160.1_1627014_1627479_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|227aa|up_7|NC_017160.1_1627657_1628338_-	PRK03641, PRK03641, DUF2057 family protein	NA|139aa|up_6|NC_017160.1_1628653_1629070_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|106aa|up_5|NC_017160.1_1629178_1629496_-	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|397aa|up_4|NC_017160.1_1629556_1630747_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|93aa|up_3|NC_017160.1_1630840_1631119_+	PRK14426, PRK14426, acylphosphatase; Provisional	NA|110aa|up_2|NC_017160.1_1631170_1631500_-	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|806aa|up_1|NC_017160.1_1635145_1637563_-	pfam01565, FAD_binding_4, FAD binding domain	NA|249aa|up_0|NC_017160.1_1637716_1638463_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|73aa|down_0|NC_017160.1_1639193_1639412_+	NA	NA|175aa|down_1|NC_017160.1_1639675_1640200_+	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|428aa|down_2|NC_017160.1_1640189_1641473_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|246aa|down_3|NC_017160.1_1641474_1642212_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|413aa|down_4|NC_017160.1_1642227_1643466_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|240aa|down_5|NC_017160.1_1643458_1644178_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|251aa|down_6|NC_017160.1_1644179_1644932_+	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|263aa|down_7|NC_017160.1_1644934_1645723_+	cd05233, SDR_c, classical (c) SDRs	NA|147aa|down_8|NC_017160.1_1645809_1646250_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|83aa|down_9|NC_017160.1_1646287_1646536_+	PRK07117, PRK07117, acyl carrier protein; Validated
GCF_000022825.1_ASM2282v1	NC_017160	Yersinia pestis D182038, complete sequence	2	1992932-1993141	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,ATTTTCTAAGCTGCCTGTGCGGCAGTGAACCT	28,28,32	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	NA,NA|38aa|down_5|NC_017160.1_1999658_1999772_+,NA|16aa|down_8|NC_017160.1_2001430_2001478_+	NA|426aa|up_9|NC_017160.1_1978492_1979770_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_8|NC_017160.1_1979801_1980644_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_7|NC_017160.1_1980691_1981432_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_6|NC_017160.1_1981859_1982282_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_5|NC_017160.1_1982290_1983595_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1051aa|up_4|NC_017160.1_1984619_1987772_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|403aa|up_3|NC_017160.1_1987734_1988943_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_2|NC_017160.1_1989313_1989631_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NC_017160.1_1990064_1991174_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NC_017160.1_1991466_1992897_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NC_017160.1_1993633_1995025_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NC_017160.1_1995484_1996576_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|298aa|down_2|NC_017160.1_1996861_1997755_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|230aa|down_3|NC_017160.1_1997712_1998402_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_4|NC_017160.1_1998398_1999394_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|38aa|down_5|NC_017160.1_1999658_1999772_+	NA	NA|97aa|down_6|NC_017160.1_1999782_2000073_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_7|NC_017160.1_2000227_2001055_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_8|NC_017160.1_2001430_2001478_+	NA	NA|300aa|down_9|NC_017160.1_2001760_2002660_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed
GCF_000022825.1_ASM2282v1	NC_017160	Yersinia pestis D182038, complete sequence	3	2839776-2840223	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas8f,cas5f,cas7f,cas6f	cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	2839804-2839835|2839864-2839895	NC_017160.1_2162002-2161971|NC_017160.1_2166349-2166380	I-F:I-F:I-F	6,7,7	7	TypeI-F	cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	NA|372aa|up_2|NC_017160.1_2835176_2836292_+,NA|425aa|up_1|NC_017160.1_2836330_2837605_+,NA|70aa|down_8|NC_017160.1_2852273_2852483_+	NA|463aa|up_9|NC_017160.1_2827074_2828463_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NC_017160.1_2828479_2829520_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NC_017160.1_2829791_2831078_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NC_017160.1_2831186_2832062_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NC_017160.1_2832062_2832887_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NC_017160.1_2833033_2834089_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NC_017160.1_2834115_2835054_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NC_017160.1_2835176_2836292_+	NA	NA|425aa|up_1|NC_017160.1_2836330_2837605_+	NA	NA|415aa|up_0|NC_017160.1_2838193_2839438_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|327aa|down_0|NC_017160.1_2840582_2841563_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas8f|449aa|down_1|NC_017160.1_2845253_2846600_+	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas5f|317aa|down_2|NC_017160.1_2846596_2847547_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_3|NC_017160.1_2847564_2848569_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_4|NC_017160.1_2848579_2849134_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_5|NC_017160.1_2849211_2850231_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_6|NC_017160.1_2850241_2850745_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_7|NC_017160.1_2850791_2852150_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_8|NC_017160.1_2852273_2852483_+	NA	NA|309aa|down_9|NC_017160.1_2852597_2853524_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional
GCF_000022825.1_ASM2282v1	NC_017160	Yersinia pestis D182038, complete sequence	4	2876594-2876863	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	Orphan	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	1	1	2876804-2876835	NC_017160.1_2160815-2160784	I-F:I-F:I-F	3,4,4	4	Orphan	cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	NA,NA|101aa|down_8|NC_017160.1_2891744_2892047_-	NA|372aa|up_9|NC_017160.1_2861270_2862386_-	PRK11259, solA, N-methyl-L-tryptophan oxidase	NA|403aa|up_8|NC_017160.1_2862746_2863955_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|99aa|up_7|NC_017160.1_2863917_2864214_-	PRK12301, bssS, biofilm formation regulator BssS	NA|82aa|up_6|NC_017160.1_2864719_2864965_-	PRK10597, PRK10597, DNA damage-inducible protein I; Provisional	NA|349aa|up_5|NC_017160.1_2865277_2866324_-	PRK05451, PRK05451, dihydroorotase; Provisional	NA|96aa|up_4|NC_017160.1_2866558_2866846_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|403aa|up_3|NC_017160.1_2867122_2868331_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|up_2|NC_017160.1_2868364_2869243_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|1993aa|up_1|NC_017160.1_2869299_2875278_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NC_017160.1_2875684_2876233_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NC_017160.1_2876866_2877721_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|509aa|down_1|NC_017160.1_2878026_2879553_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|642aa|down_2|NC_017160.1_2879587_2881513_+	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|310aa|down_3|NC_017160.1_2882917_2883847_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_4|NC_017160.1_2883895_2885443_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|378aa|down_5|NC_017160.1_2886507_2887641_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_6|NC_017160.1_2887672_2889643_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|272aa|down_7|NC_017160.1_2890726_2891542_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|101aa|down_8|NC_017160.1_2891744_2892047_-	NA	NA|597aa|down_9|NC_017160.1_2892111_2893902_+	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
GCF_000022825.1_ASM2282v1	NC_017160	Yersinia pestis D182038, complete sequence	5	4390211-4390322	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas1,cas8f,cas5f,cas7f,cas6f,csa3	NA,NA|90aa|down_1|NC_017160.1_4392241_4392511_-	NA|268aa|up_9|NC_017160.1_4373704_4374508_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|443aa|up_8|NC_017160.1_4374572_4375901_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_7|NC_017160.1_4375976_4377785_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_6|NC_017160.1_4377950_4378568_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|831aa|up_5|NC_017160.1_4378789_4381282_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|458aa|up_4|NC_017160.1_4381880_4383254_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|259aa|up_3|NC_017160.1_4383420_4384197_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_2|NC_017160.1_4384362_4385367_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|388aa|up_1|NC_017160.1_4385617_4386781_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_0|NC_017160.1_4387154_4389791_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|452aa|down_0|NC_017160.1_4390532_4391887_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|90aa|down_1|NC_017160.1_4392241_4392511_-	NA	NA|155aa|down_2|NC_017160.1_4392675_4393140_-	pfam06092, DUF943, Enterobacterial putative membrane protein (DUF943)	NA|59aa|down_3|NC_017160.1_4393123_4393300_-	TIGR03034, TIGR03034, conserved hypothetical protein	NA|505aa|down_4|NC_017160.1_4394221_4395736_+	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|816aa|down_5|NC_017160.1_4395898_4398346_-	PRK14986, PRK14986, glycogen phosphorylase; Provisional	NA|477aa|down_6|NC_017160.1_4398514_4399945_-	PRK00654, glgA, glycogen synthase GlgA	NA|663aa|down_7|NC_017160.1_4401452_4403441_-	PRK03705, PRK03705, glycogen debranching protein GlgX	NA|566aa|down_8|NC_017160.1_4406132_4407830_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|3014aa|down_9|NC_017160.1_4408037_4417079_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain
