The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017154	Yersinia pestis D106004, complete sequence	4640720	500379	546851	4640720	transposase,plate,tRNA	Bodo_saltans_virus(20.0%)	40	NA	NA
WP_002210509.1|500379_503196_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.1	1.0e-63
WP_002210508.1|503195_503705_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_002228112.1|503772_504231_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_002210506.1|504211_505165_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_002213775.1|505546_506005_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002210504.1|506457_507279_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_002224759.1|507751_508927_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	34.3	6.9e-51
WP_002210502.1|508942_512176_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_002210501.1|512403_513018_-	LysE family translocator	NA	NA	NA	NA	NA
WP_002210499.1|513341_514142_+	threonine/serine exporter ThrE family protein	NA	NA	NA	NA	NA
WP_002210498.1|514138_514594_+	threonine/serine exporter	NA	NA	NA	NA	NA
WP_002210497.1|514743_515226_+	type 3 dihydrofolate reductase	NA	A0A219UQN5	Bacillus_phage	42.6	4.7e-30
WP_002213775.1|515437_515896_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_071525509.1|516337_516652_+	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
WP_002210493.1|516778_517243_+	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
WP_002210492.1|517332_518202_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
WP_002210491.1|518218_518596_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_002210490.1|518609_519428_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_002210489.1|519420_520416_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_002210488.1|520399_521704_-	peptidylprolyl isomerase SurA	NA	NA	NA	NA	NA
WP_002228111.1|521771_524114_-	LPS assembly protein LptD	NA	NA	NA	NA	NA
WP_002210486.1|524298_525132_+	co-chaperone DjlA	NA	NA	NA	NA	NA
WP_002210485.1|525429_526050_-|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	tRNA	NA	NA	NA	NA
WP_002214747.1|527272_528016_-	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
WP_002210482.1|528345_529359_+	ImpA family type VI secretion system protein	NA	NA	NA	NA	NA
WP_002210481.1|529369_529930_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002210480.1|529938_531441_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002210479.1|531603_532122_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_002210478.1|532195_532639_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_002210477.1|532671_534516_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_002210476.1|534508_535492_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002210475.1|535509_538098_+	type VI secretion system ATPase TssH	NA	A0A248SJW6	Salicola_phage	28.7	1.9e-77
WP_002210474.1|538201_540550_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.9	2.1e-14
WP_002228110.1|540562_541135_+	DUF2169 domain-containing protein	NA	NA	NA	NA	NA
WP_002228109.1|541159_542782_+	DUF2169 domain-containing protein	NA	NA	NA	NA	NA
WP_002214739.1|542807_543911_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002210473.1|543903_544521_+	DUF3540 domain-containing protein	NA	NA	NA	NA	NA
WP_002214737.1|544526_544892_+	DUF4150 domain-containing protein	NA	NA	NA	NA	NA
WP_002210471.1|544884_545376_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002210470.1|545495_546851_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 2
NC_017154	Yersinia pestis D106004, complete sequence	4640720	894107	982438	4640720	protease,transposase,plate,tRNA	Staphylococcus_phage(22.22%)	58	NA	NA
WP_100067904.1|894107_895462_-|transposase	IS3-like element IS1661 family transposase	transposase	A0A1B1P773	Bacillus_phage	44.7	1.1e-55
WP_002211645.1|895733_897158_+	MFS transporter	NA	NA	NA	NA	NA
WP_002211646.1|897416_899597_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_002211647.1|899668_900997_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA	NA
WP_002211648.1|900993_902742_-	aerobactin synthase IucC	NA	NA	NA	NA	NA
WP_002211649.1|902738_903689_-	acetyltransferase	NA	NA	NA	NA	NA
WP_002228661.1|906755_906950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211652.1|907097_907931_-	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA	NA
WP_002211654.1|908307_909684_-	peptidase	NA	NA	NA	NA	NA
WP_002211655.1|910245_910989_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002215903.1|910969_911620_-	acyl-homoserine-lactone synthase	NA	NA	NA	NA	NA
WP_002215902.1|912794_913445_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002215900.1|913895_914291_+	lipoprotein	NA	NA	NA	NA	NA
WP_002211662.1|916566_917067_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002215896.1|917109_918654_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002211664.1|918665_920018_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_002210015.1|920014_920701_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_002210014.1|922439_922931_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_002211927.1|923318_925961_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.6	1.6e-92
WP_002211928.1|925963_928312_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.1	4.5e-17
WP_015683871.1|928327_930625_+	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_002210008.1|930611_931379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086016632.1|931474_932171_+|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	48.5	1.3e-60
WP_002210005.1|932779_933415_+	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
WP_002210002.1|934743_936906_+	ornithine decarboxylase SpeF	NA	NA	NA	NA	NA
WP_002210001.1|937461_938421_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002210000.1|938466_939966_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.7	5.2e-19
WP_002209999.1|939998_940982_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002209998.1|941064_943098_-	TonB-dependent siderophore receptor	NA	A0A0P0I887	Acinetobacter_phage	26.1	4.5e-05
WP_002209997.1|943201_944302_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002209995.1|944601_945678_-	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA	NA
WP_002209994.1|945860_946133_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_002228057.1|946310_947426_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_002209991.1|947763_948483_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_002209990.1|948482_948809_+	YggL family protein	NA	NA	NA	NA	NA
WP_002209989.1|948919_949846_+	glutaminase B	NA	NA	NA	NA	NA
WP_002224905.1|951189_960522_+	phage minor structural protein	NA	NA	NA	NA	NA
WP_002209987.1|960711_961842_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_002215612.1|962528_962819_-	YggU family protein	NA	NA	NA	NA	NA
WP_002209984.1|962815_963370_-	YggT family protein	NA	NA	NA	NA	NA
WP_002209983.1|963657_964479_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_002215609.1|964611_965310_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_002209981.1|965329_966454_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_002209980.1|966562_967678_-	agmatine deiminase	NA	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	50.7	3.0e-96
WP_002209979.1|967681_968566_-	N-carbamoylputrescine amidase	NA	A7IVZ1	Paramecium_bursaria_Chlorella_virus	51.0	3.1e-80
WP_002209978.1|968745_969168_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002209977.1|969167_969731_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_002209976.1|969846_970806_-	glutathione synthase	NA	NA	NA	NA	NA
WP_002209975.1|970831_971563_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_002209973.1|971814_972522_-	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_002228653.1|972619_973132_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_002209971.1|973324_974479_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	62.1	1.7e-126
WP_002209969.1|975685_977665_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_002209968.1|977824_978145_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA	NA
WP_071525520.1|978178_978289_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002209967.1|978434_979187_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_002209965.1|979677_981672_+	transketolase	NA	NA	NA	NA	NA
WP_002213759.1|981979_982438_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_017154	Yersinia pestis D106004, complete sequence	4640720	1168805	1236655	4640720	protease,transposase,tRNA,integrase	Escherichia_phage(21.43%)	60	1225730:1225789	1236796:1236880
WP_002213775.1|1168805_1169264_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002212124.1|1169517_1169850_+	YqcC family protein	NA	NA	NA	NA	NA
WP_002212125.1|1169849_1170623_+|tRNA	tRNA pseudouridine(65) synthase TruC	tRNA	NA	NA	NA	NA
WP_002212126.1|1170650_1171100_+	flavodoxin	NA	NA	NA	NA	NA
WP_002212127.1|1171189_1171579_-	DUF3461 family protein	NA	NA	NA	NA	NA
WP_002212128.1|1171702_1172527_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_002212129.1|1172701_1175383_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA	NA
WP_002212130.1|1175442_1176234_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002221800.1|1176668_1177394_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002212133.1|1178586_1179312_+	UMP kinase	NA	NA	NA	NA	NA
WP_002212134.1|1179447_1180005_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_002212135.1|1180218_1181415_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_002212136.1|1181638_1182397_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	40.7	1.4e-23
WP_002212137.1|1182406_1183255_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002212138.1|1183283_1184639_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
WP_002212140.1|1187221_1187719_+	molecular chaperone Skp	NA	NA	NA	NA	NA
WP_002212141.1|1187722_1188745_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_002217656.1|1188902_1189433_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_002212143.1|1189436_1190225_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_002212144.1|1190228_1191413_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_002212145.1|1191409_1192006_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	41.4	3.8e-29
WP_002228634.1|1192168_1195651_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	37.2	3.6e-204
WP_002212147.1|1195663_1196623_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_002212148.1|1196806_1197205_+	VOC family protein	NA	NA	NA	NA	NA
WP_002212149.1|1197206_1198589_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_002212150.1|1198825_1199143_+	cytochrome c	NA	NA	NA	NA	NA
WP_002218374.1|1199407_1199668_-	Rho-binding antiterminator	NA	NA	NA	NA	NA
WP_002212152.1|1199654_1199855_-	YaeP family protein	NA	NA	NA	NA	NA
WP_002212153.1|1200095_1200644_+	YaeQ family protein	NA	NA	NA	NA	NA
WP_002212154.1|1200646_1201063_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_002212155.1|1201147_1201831_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA	NA
WP_002212156.1|1201964_1203683_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002212157.1|1203786_1204494_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_002212159.1|1205014_1205830_-	MetQ/NlpA family lipoprotein	NA	NA	NA	NA	NA
WP_002212160.1|1205893_1206547_-	methionine ABC transporter permease MetI	NA	NA	NA	NA	NA
WP_015683885.1|1207758_1208325_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_002220061.1|1208575_1208761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210693.1|1214465_1215269_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SKP9	Klosneuvirus	29.2	3.6e-27
WP_002220059.1|1216128_1216911_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_002228041.1|1216952_1218341_-	murein transglycosylase D	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	36.8	4.5e-09
WP_002210697.1|1218412_1219168_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_002210698.1|1219212_1219932_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002210699.1|1219986_1220451_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	53.9	9.1e-47
WP_002210700.1|1220520_1221285_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.8	1.9e-41
WP_002210701.1|1221530_1223015_-	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA	NA
WP_002210703.1|1223353_1223587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001297096.1|1223637_1224417_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|1224416_1225439_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
1225730:1225789	attL	CACAAAAAAGCCCGCAAACCTAGAAGGGATGCGGGCTTTCCGTACTTCACCGGACTTATC	NA	NA	NA	NA
WP_002215951.1|1226043_1226361_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	48.1	2.0e-13
WP_002210705.1|1226366_1226681_+	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_002210707.1|1227029_1228118_-	AAA family ATPase	NA	A0A2H4JFA4	uncultured_Caudovirales_phage	60.4	1.4e-114
WP_002215950.1|1228114_1229074_-	toprim domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	41.0	1.6e-50
WP_002215949.1|1229066_1229609_-	ash family protein	NA	NA	NA	NA	NA
WP_002210709.1|1229608_1229809_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.7	1.6e-08
WP_002210710.1|1229801_1230689_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_002215946.1|1231496_1231724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002215945.1|1231885_1233556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210712.1|1233606_1234695_-	DUF4297 domain-containing protein	NA	NA	NA	NA	NA
WP_002210713.1|1234773_1235973_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.2	2.2e-108
WP_002213759.1|1236196_1236655_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
1236796:1236880	attR	CACAAAAAAGCCCGCAAACCTAGAAGGGATGCGGGCTTTCCGTACTTCACCGGACTTATCTGGTAATAACCGGTTTAACATTTGG	NA	NA	NA	NA
>prophage 4
NC_017154	Yersinia pestis D106004, complete sequence	4640720	1277963	1335117	4640720	protease,transposase,holin	Planktothrix_phage(18.18%)	49	NA	NA
WP_002210751.1|1277963_1278782_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002210753.1|1278998_1280489_-	molybdate ABC transporter ATP-binding protein ModF	NA	A0A1M7XV31	Cedratvirus	26.8	2.8e-12
WP_002210754.1|1280598_1281390_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002217291.1|1281689_1281842_+	multidrug efflux pump-associated protein, AcrZ family	NA	NA	NA	NA	NA
WP_002210756.1|1282076_1282856_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002210757.1|1282855_1283551_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002210758.1|1283544_1284624_+	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	35.1	1.4e-21
WP_002210759.1|1284679_1285501_-	pyridoxal phosphatase	NA	NA	NA	NA	NA
WP_002210760.1|1285791_1286796_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_002210762.1|1288360_1289398_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_002210763.1|1289397_1290549_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_002210764.1|1290532_1291336_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA	NA
WP_002216554.1|1291328_1292051_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_002210766.1|1292202_1292913_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	25.3	3.5e-13
WP_002210767.1|1294002_1296018_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_002210768.1|1296309_1296555_+	DNA-binding protein VF530	NA	NA	NA	NA	NA
WP_002210769.1|1296685_1297609_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	27.8	3.7e-23
WP_002210771.1|1298140_1299121_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_002210772.1|1299221_1299701_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_002210773.1|1299697_1299943_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
WP_002210774.1|1299945_1300398_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA	NA
WP_002210775.1|1300540_1301251_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_002213775.1|1301484_1301943_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002220180.1|1302171_1303875_-|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.5	9.4e-57
WP_002218281.1|1303897_1305370_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002218278.1|1305427_1306024_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_002228035.1|1306388_1308437_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	28.5	1.4e-19
WP_002214199.1|1308668_1309562_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002214197.1|1309599_1310448_-	DMT family transporter	NA	NA	NA	NA	NA
WP_002214195.1|1310793_1311657_+	xanthosine phosphorylase	NA	Q5YBA4	Grouper_iridovirus	40.7	2.3e-51
WP_002213775.1|1312585_1313044_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002220173.1|1313849_1314323_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA	NA
WP_002220171.1|1314680_1316495_+	PAS domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.4	1.0e-16
WP_002220170.1|1316481_1317846_+	sigma 54-interacting transcriptional regulator	NA	Q6XM27	Feldmannia_irregularis_virus	29.1	1.3e-05
WP_002220169.1|1318193_1319303_+	alkene reductase	NA	NA	NA	NA	NA
WP_002220168.1|1319303_1320215_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002220165.1|1320769_1320997_+	N5,N10-methylene tetrahydromethanopterin reductase	NA	NA	NA	NA	NA
WP_002220163.1|1321007_1321334_+	EthD family reductase	NA	NA	NA	NA	NA
WP_002220162.1|1321372_1322479_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002220159.1|1322491_1323667_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002220158.1|1323671_1325414_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	34.6	6.3e-24
WP_002220156.1|1325427_1326414_-	secretion protein HlyD	NA	NA	NA	NA	NA
WP_002220154.1|1326465_1327176_-	transcriptional regulator CecR	NA	NA	NA	NA	NA
WP_002220152.1|1327566_1328922_+	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.6	4.1e-55
WP_002228620.1|1330135_1330330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016256670.1|1330363_1330690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002228617.1|1330830_1331067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002223532.1|1331150_1331465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213759.1|1334658_1335117_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_017154	Yersinia pestis D106004, complete sequence	4640720	1378316	1423675	4640720	tail,coat,transposase,protease,plate	Pseudomonas_phage(25.0%)	39	NA	NA
WP_002210815.1|1378316_1378826_-|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
WP_002210816.1|1378860_1379118_-	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	54.9	4.0e-20
WP_002210817.1|1379121_1380252_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.6	7.6e-172
WP_002210818.1|1380414_1382703_-	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	64.9	1.1e-286
WP_002210820.1|1383196_1383925_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_002210821.1|1384186_1386862_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	34.4	4.0e-102
WP_002228028.1|1387049_1389923_+	two-component system sensor histidine kinase RcsC	NA	A0A1V0SGX0	Hokovirus	28.3	3.8e-42
WP_002210824.1|1389990_1390644_-	transcriptional regulator RcsB	NA	NA	NA	NA	NA
WP_015683892.1|1390646_1391219_-	histidine phosphotransferase	NA	NA	NA	NA	NA
WP_002216093.1|1391386_1393339_-	phosphotransferase RcsD	NA	NA	NA	NA	NA
WP_002210825.1|1393362_1394517_-	MFS transporter	NA	NA	NA	NA	NA
WP_002210826.1|1395619_1396735_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	57.6	9.6e-111
WP_002213759.1|1396936_1397395_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002228026.1|1398184_1399351_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA	NA
WP_002208870.1|1399625_1401152_-	MFS transporter	NA	NA	NA	NA	NA
WP_002208869.1|1401528_1402557_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_002208868.1|1402630_1404418_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	63.5	4.0e-10
WP_002208867.1|1404839_1405775_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA	NA
WP_002208866.1|1405946_1406189_-	DinI family protein	NA	K7PKR6	Enterobacteria_phage	65.0	6.9e-22
WP_002208864.1|1406394_1407117_-	LexA family transcriptional regulator	NA	F1C599	Cronobacter_phage	51.9	2.2e-63
WP_002215470.1|1407390_1407870_+	antitermination protein Q	NA	S5M7R9	Escherichia_phage	61.0	2.3e-37
WP_002208862.1|1408080_1409385_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	46.0	1.7e-90
WP_002208861.1|1410093_1410906_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002208860.1|1410881_1411676_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_002208859.1|1412306_1412597_+	hypothetical protein	NA	H6WRZ3	Salmonella_phage	46.3	7.7e-12
WP_015683893.1|1412642_1413260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002208857.1|1413264_1413459_+	DUF2635 domain-containing protein	NA	B5TK66	Pseudomonas_phage	60.4	3.5e-08
WP_002208856.1|1413455_1414964_+|tail	tail protein	tail	B5TK67	Pseudomonas_phage	44.2	2.4e-104
WP_002208855.1|1414985_1415354_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002208854.1|1415355_1415655_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_002208853.1|1415775_1417269_+|coat	coat protein	coat	NA	NA	NA	NA
WP_002208852.1|1417535_1418942_+	hypothetical protein	NA	Q8SBG8	Shigella_phage	33.7	2.1e-17
WP_002208850.1|1418938_1419994_+|tail	tail protein	tail	M1PVV2	Vibrio_phage	27.2	1.3e-37
WP_002215460.1|1420009_1420606_+|plate	baseplate assembly protein	plate	NA	NA	NA	NA
WP_002208848.1|1420602_1421058_+	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
WP_002208847.1|1421061_1422198_+|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.5	4.5e-31
WP_002215458.1|1422194_1422455_+	DUF2313 domain-containing protein	NA	NA	NA	NA	NA
WP_002208846.1|1422451_1422799_+	DUF2313 domain-containing protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	41.3	6.4e-21
WP_002208845.1|1422895_1423675_+|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	52.4	7.1e-52
>prophage 6
NC_017154	Yersinia pestis D106004, complete sequence	4640720	1546547	1705134	4640720	protease,transposase,plate,tRNA	Bacillus_phage(16.0%)	112	NA	NA
WP_002211349.1|1546547_1546868_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	8.2e-15
WP_002211348.1|1546893_1549170_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.7	7.4e-166
WP_002213759.1|1549462_1549921_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002211347.1|1550292_1550511_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_002211344.1|1551601_1553326_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	31.8	3.3e-17
WP_002217690.1|1553328_1555095_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.9	6.8e-26
WP_002211341.1|1555553_1556516_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	45.7	4.9e-63
WP_002211340.1|1557282_1557777_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
WP_002211339.1|1557899_1561817_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.8	1.5e-89
WP_002211338.1|1562009_1562618_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_002228009.1|1562628_1563972_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.4	5.4e-76
WP_002211336.1|1564213_1565506_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.5	4.0e-92
WP_002211335.1|1565736_1566885_+	MFS transporter	NA	NA	NA	NA	NA
WP_002211334.1|1567038_1567773_-	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	27.4	3.6e-21
WP_002211333.1|1568759_1569434_+	glycosyltransferase family 25 protein	NA	A0A2H4UUT1	Bodo_saltans_virus	40.5	7.8e-31
WP_002211331.1|1571888_1572746_-	formate transporter FocA	NA	NA	NA	NA	NA
WP_002211330.1|1573442_1575209_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
WP_002211329.1|1575357_1576395_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_002211328.1|1576663_1577758_+	hemagglutinin	NA	B0FIT1	Escherichia_phage	32.7	3.7e-06
WP_002220027.1|1577965_1579627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211325.1|1581242_1582529_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002211324.1|1582841_1583534_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_002211323.1|1583707_1585381_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_002211322.1|1585441_1585726_+	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	2.4e-10
WP_002211321.1|1586272_1588564_+	ComEC family protein	NA	NA	NA	NA	NA
WP_002211320.1|1588599_1590348_+	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	31.5	8.7e-66
WP_002211319.1|1590344_1591331_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_002216263.1|1591338_1592775_-	VOC family protein	NA	NA	NA	NA	NA
WP_002211317.1|1593493_1593703_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	50.0	3.0e-10
WP_002211315.1|1594250_1594433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211314.1|1594429_1595182_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002211313.1|1595544_1596438_+	YcbJ family phosphotransferase	NA	NA	NA	NA	NA
WP_002211311.1|1597210_1597996_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_002211310.1|1597992_1599315_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_002211309.1|1599295_1600024_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_002211308.1|1600020_1604478_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_002213759.1|1604693_1605152_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002211305.1|1607514_1608063_+	YcbK family protein	NA	A0A0K1LLY2	Rhodobacter_phage	34.7	7.8e-05
WP_002430096.1|1608923_1609040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211303.1|1609193_1610384_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_002354007.1|1610640_1611720_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	56.5	3.2e-111
WP_002211301.1|1612020_1613421_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.2	6.5e-80
WP_002228013.1|1613919_1615125_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_002211296.1|1619090_1620101_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_002211295.1|1620283_1620835_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_002363919.1|1620860_1621970_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_002211293.1|1622072_1624193_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_002211292.1|1624198_1626112_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	1.5e-47
WP_002211291.1|1626240_1627527_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_002211290.1|1627513_1629166_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_002211289.1|1629162_1629741_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_002228015.1|1630010_1630178_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_002213775.1|1630375_1630834_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_015683910.1|1631994_1632774_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.2	1.0e-138
WP_000255944.1|1632773_1633796_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002211286.1|1634429_1634618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002220006.1|1634883_1635402_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_002224683.1|1635470_1637222_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_002226586.1|1637432_1637888_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_002213775.1|1638056_1638515_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002213066.1|1638704_1639766_-	porin OmpA	NA	NA	NA	NA	NA
WP_002213065.1|1640123_1640630_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_002213064.1|1640858_1641494_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_002213063.1|1641595_1643734_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_002213062.1|1643763_1644210_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_002221095.1|1644403_1646458_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	25.8	1.5e-16
WP_002213060.1|1646518_1646983_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002213058.1|1647161_1647842_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_002213056.1|1648158_1648575_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_002213054.1|1648683_1649001_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_002213052.1|1649061_1650252_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	W6LLI2	Streptococcus_phage	28.1	2.1e-26
WP_002213049.1|1650345_1650624_+	acylphosphatase	NA	NA	NA	NA	NA
WP_002213046.1|1650675_1651005_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_002213039.1|1654650_1657068_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002213038.1|1657221_1657968_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.4	3.3e-14
WP_002213036.1|1658698_1658917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213034.1|1659180_1659705_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_002213032.1|1659694_1660978_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA	NA
WP_002213030.1|1660979_1661717_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002213028.1|1661732_1662971_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_002213026.1|1662963_1663683_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_002213025.1|1663684_1664437_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_002213024.1|1664439_1665228_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002228570.1|1665314_1665755_+	lipocalin-like domain-containing protein	NA	NA	NA	NA	NA
WP_002213017.1|1665792_1666041_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_002213016.1|1666139_1666988_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002213014.1|1667976_1668477_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002214707.1|1668519_1670070_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002213011.1|1670081_1671434_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_002210015.1|1671430_1672117_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_002228049.1|1672116_1673853_+	OmpA family protein	NA	NA	NA	NA	NA
WP_002210014.1|1673856_1674348_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_002210013.1|1674765_1677414_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	29.5	4.8e-92
WP_015683911.1|1677410_1679759_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	33.3	3.1e-18
WP_002210011.1|1679773_1681996_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
WP_016257642.1|1682139_1682496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002216110.1|1682689_1682884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210010.1|1684108_1684744_+	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
WP_015683912.1|1684759_1687060_+	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_002211930.1|1687056_1687830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211931.1|1687983_1688244_+	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
WP_002211932.1|1688259_1690443_+	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_002214564.1|1690615_1691086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211935.1|1693250_1694483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211936.1|1694479_1697902_+	type VI secretion system membrane subunit	NA	NA	NA	NA	NA
WP_002211937.1|1697945_1699547_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_002211938.1|1699564_1700623_+	PAAR domain protein	NA	NA	NA	NA	NA
WP_002211939.1|1700637_1701093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211940.1|1701313_1703077_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_002211941.1|1703040_1704126_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002214552.1|1704100_1704682_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002211943.1|1704681_1705134_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 7
NC_017154	Yersinia pestis D106004, complete sequence	4640720	1874702	1934408	4640720	transposase,tRNA,coat	Escherichia_phage(25.0%)	56	NA	NA
WP_000255944.1|1874702_1875725_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002213759.1|1876306_1876765_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002227902.1|1876955_1877192_-	major outer membrane lipoprotein	NA	NA	NA	NA	NA
WP_002210936.1|1877512_1878925_-	pyruvate kinase PykF	NA	NA	NA	NA	NA
WP_002210938.1|1881340_1881532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210939.1|1881576_1882233_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	34.7	1.1e-21
WP_002210940.1|1882283_1883435_-	cyclopropane fatty acyl phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	45.7	1.0e-83
WP_002210941.1|1883914_1885117_-	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	23.2	6.9e-14
WP_002210942.1|1885406_1886339_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002210943.1|1886427_1887453_-	HTH-type transcriptional repressor PurR	NA	C6ZCU4	Enterobacteria_phage	31.4	5.9e-30
WP_002216285.1|1887786_1887876_+	YnhF family membrane protein	NA	NA	NA	NA	NA
WP_002210944.1|1887979_1888558_-	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	45.6	4.4e-43
WP_002210945.1|1888918_1889770_-	hydrolase	NA	A0A2H4PI41	Streptomyces_phage	43.9	2.8e-17
WP_002210946.1|1890209_1890560_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_087768161.1|1890758_1890854_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002210947.1|1890868_1891549_-	ribonuclease T	NA	NA	NA	NA	NA
WP_002210948.1|1891627_1892035_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_002210949.1|1892307_1895262_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_002210950.1|1895482_1896580_-	alkene reductase	NA	NA	NA	NA	NA
WP_002210951.1|1896667_1897267_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002210952.1|1897489_1899127_-	phosphoethanolamine transferase EptA	NA	NA	NA	NA	NA
WP_002210953.1|1899300_1899540_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_002210954.1|1899671_1900568_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_002210955.1|1901365_1901797_+	virulence master transcriptional regulator RovA	NA	NA	NA	NA	NA
WP_002210956.1|1901940_1902408_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_002218322.1|1902962_1904075_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_002218323.1|1904132_1904447_+	lipoprotein	NA	NA	NA	NA	NA
WP_002210959.1|1904537_1905191_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_002210960.1|1905372_1906647_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1L2CUL7	Pectobacterium_phage	42.4	3.0e-84
WP_002210961.1|1906801_1907662_+	pyridoxal kinase PdxY	NA	NA	NA	NA	NA
WP_002210962.1|1907721_1908327_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_002210964.1|1908571_1908835_-	DUF3811 domain-containing protein	NA	NA	NA	NA	NA
WP_002210965.1|1909080_1909671_-	YIP1 family protein	NA	NA	NA	NA	NA
WP_002215910.1|1909925_1911431_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_002210967.1|1912073_1913354_-	CMD domain-containing protein	NA	NA	NA	NA	NA
WP_002210969.1|1913743_1914559_-	peptide ABC transporter ATP-binding protein SapF	NA	G9BWD6	Planktothrix_phage	30.9	6.5e-16
WP_002210970.1|1914558_1915551_-	peptide ABC transporter ATP-binding protein SapD	NA	G9BWD6	Planktothrix_phage	25.3	8.8e-07
WP_002210971.1|1915550_1916441_-	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
WP_002210972.1|1916427_1917393_-	peptide ABC transporter permease SapB	NA	NA	NA	NA	NA
WP_002210973.1|1917389_1919036_-	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA	NA
WP_002213759.1|1919693_1920152_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002210974.1|1920316_1921345_-	phage shock protein operon transcriptional activator	NA	NA	NA	NA	NA
WP_002210975.1|1921589_1922255_+	phage shock protein PspA	NA	NA	NA	NA	NA
WP_002210976.1|1922416_1922644_+	envelope stress response membrane protein PspB	NA	NA	NA	NA	NA
WP_002210977.1|1922643_1923003_+	envelope stress response membrane protein PspC	NA	NA	NA	NA	NA
WP_002216375.1|1923087_1923330_+	phage shock protein PspD	NA	NA	NA	NA	NA
WP_002210980.1|1924702_1925764_+	TIGR01620 family protein	NA	NA	NA	NA	NA
WP_002210981.1|1925773_1926232_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_002210982.1|1926293_1926740_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_002210983.1|1927074_1928652_+	transcriptional regulator TyrR	NA	NA	NA	NA	NA
WP_002213775.1|1928798_1929257_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002210984.1|1929509_1930013_-	thiol peroxidase	NA	NA	NA	NA	NA
WP_001297096.1|1930263_1931043_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|1931042_1932065_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002210859.1|1932971_1933211_-	YebV family protein	NA	NA	NA	NA	NA
WP_002210858.1|1933418_1934408_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
>prophage 8
NC_017154	Yersinia pestis D106004, complete sequence	4640720	1938014	1977115	4640720	protease,transposase,coat	Moraxella_phage(14.29%)	30	NA	NA
WP_002216611.1|1938014_1938572_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002216613.1|1938592_1939123_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002210852.1|1939128_1939683_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002216616.1|1940161_1942813_-	PqiB family protein	NA	NA	NA	NA	NA
WP_002367629.1|1942781_1944029_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_002210850.1|1944260_1944758_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002210849.1|1944853_1945567_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_015683920.1|1945586_1947659_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	35.0	5.2e-86
WP_002210847.1|1948132_1949014_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_002210846.1|1949671_1950214_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_002215118.1|1950366_1951146_+	fimbrial chaperone	NA	NA	NA	NA	NA
WP_002210844.1|1951227_1953840_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_002215120.1|1953836_1955000_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_002210843.1|1954996_1955800_+	molecular chaperone	NA	NA	NA	NA	NA
WP_002210841.1|1957545_1958712_+	oligogalacturonate lyase	NA	NA	NA	NA	NA
WP_002210840.1|1958898_1959690_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
WP_002210839.1|1960092_1960944_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	28.8	1.3e-11
WP_002210838.1|1961158_1962550_-	L-cystine transporter	NA	NA	NA	NA	NA
WP_002210837.1|1962753_1963302_-	metal-dependent hydrolase	NA	A0A127AVX7	Bacillus_phage	32.9	4.0e-09
WP_002210836.1|1963781_1964492_-	porin	NA	NA	NA	NA	NA
WP_002210835.1|1964789_1966082_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002210834.1|1966097_1967225_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	26.5	1.6e-12
WP_002210833.1|1967238_1968159_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002210832.1|1968151_1969042_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002210831.1|1969082_1970750_-	pectate disaccharide-lyase	NA	NA	NA	NA	NA
WP_002210830.1|1971085_1971847_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.9	3.1e-20
WP_002210829.1|1971938_1972775_-	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA	NA
WP_002210828.1|1973110_1973461_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002209743.1|1973508_1974717_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_000255944.1|1976092_1977115_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
>prophage 9
NC_017154	Yersinia pestis D106004, complete sequence	4640720	2349311	2448967	4640720	tail,integrase,transposase,tRNA,lysis	Escherichia_phage(13.46%)	98	2350792:2350851	2463214:2463326
WP_002211184.1|2349311_2350010_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002211183.1|2350146_2350752_+	Slp family lipoprotein	NA	NA	NA	NA	NA
WP_087768167.1|2350752_2350860_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
2350792:2350851	attL	GAGGTTATTGACAAAGTGCCCGCGACGGAGAGAACAGGCAGATCGTAAAGACGCCGTAAA	NA	NA	NA	NA
WP_002211182.1|2351394_2353083_+	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	28.9	1.8e-31
WP_002211181.1|2353242_2354364_+	ribonuclease D	NA	NA	NA	NA	NA
WP_002211180.1|2354600_2354870_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_002211179.1|2354873_2355686_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_002220631.1|2355710_2356397_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_002215627.1|2357529_2358615_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_002211740.1|2358685_2359342_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_002211739.1|2359444_2359891_+	YcgN family cysteine cluster protein	NA	NA	NA	NA	NA
WP_002211738.1|2359917_2361156_-|integrase	site-specific integrase	integrase	Q20GI2	Phage_258-320	53.3	2.3e-121
WP_000255944.1|2361225_2362248_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|2362247_2363027_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002215632.1|2363194_2363455_-	excisionase family protein	NA	Q859D3	Escherichia_coli_phage	42.9	1.7e-10
WP_071525537.1|2363754_2364504_-	DNA adenine methylase	NA	Q5QF26	Pseudomonas_virus	48.5	1.5e-54
WP_002211736.1|2364479_2364926_+	recombination protein NinB	NA	A0A2H4J8D9	uncultured_Caudovirales_phage	62.5	3.9e-47
WP_002215636.1|2365604_2365994_+	antitermination protein	NA	A0A1W6JNX1	Morganella_phage	68.8	1.4e-45
WP_002215638.1|2365997_2366216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211732.1|2366264_2366828_+	hypothetical protein	NA	B6SD63	Bacteriophage	58.0	9.4e-30
WP_002211731.1|2367251_2367461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002215644.1|2367457_2367733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002430108.1|2367978_2368176_+	hypothetical protein	NA	B6SD15	Bacteriophage	64.4	4.9e-18
WP_002211730.1|2368206_2368719_+	lysozyme	NA	I6PBN2	Cronobacter_phage	61.6	9.7e-50
WP_002211729.1|2368703_2369162_+|lysis	lysis protein	lysis	A0A2H4JHL8	uncultured_Caudovirales_phage	45.3	4.9e-21
WP_002211727.1|2369707_2370421_+	hypothetical protein	NA	Q5MBW0	Stx1-converting_phage	60.2	7.6e-69
WP_002211725.1|2370877_2371513_+	hypothetical protein	NA	I6S676	Salmonella_phage	71.4	7.2e-87
WP_002211724.1|2371543_2371993_+	DUF2280 domain-containing protein	NA	I6S1P9	Salmonella_phage	72.9	1.0e-47
WP_002211723.1|2371996_2372581_+	hypothetical protein	NA	A0A0R6PHH0	Moraxella_phage	70.7	4.8e-69
WP_002209743.1|2372628_2373837_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002211722.1|2373841_2374816_+	hypothetical protein	NA	A0A1W6JNY3	Morganella_phage	81.1	2.3e-153
WP_002228445.1|2374815_2375544_+	hypothetical protein	NA	A0A1B0VMH0	Pseudomonas_phage	51.4	4.6e-61
WP_002228446.1|2375562_2376204_+	DUF4055 domain-containing protein	NA	A0A1B0VMH0	Pseudomonas_phage	54.1	3.8e-59
WP_002211721.1|2376204_2377317_+	hypothetical protein	NA	I6PD76	Cronobacter_phage	58.2	6.0e-121
WP_002211720.1|2377438_2378212_+	hypothetical protein	NA	A0A1B0VMG1	Pseudomonas_phage	62.3	2.8e-69
WP_002211719.1|2378225_2379431_+	hypothetical protein	NA	A0A1B0VMF8	Pseudomonas_phage	79.2	1.8e-142
WP_002211718.1|2379478_2379961_+	hypothetical protein	NA	G8C7P9	Escherichia_phage	46.1	6.4e-27
WP_002211717.1|2379957_2380212_+	hypothetical protein	NA	J9Q7U0	Salmonella_phage	53.1	2.2e-18
WP_002211716.1|2380213_2380564_+	hypothetical protein	NA	I6PD77	Cronobacter_phage	56.0	6.9e-31
WP_002211715.1|2380565_2381150_+	hypothetical protein	NA	G8C7Q1	Escherichia_phage	52.1	3.6e-48
WP_002211714.1|2381146_2381554_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_002211713.1|2381619_2382540_+|tail	phage tail protein	tail	I6PBN6	Cronobacter_phage	49.1	4.4e-61
WP_002211712.1|2382552_2382864_+	hypothetical protein	NA	I6PDG2	Cronobacter_phage	58.3	1.4e-30
WP_071525538.1|2382911_2383172_+	hypothetical protein	NA	A0A0S2SY90	Pseudomonas_phage	50.0	3.7e-13
WP_002211711.1|2383172_2386676_+|tail	phage tail tape measure protein	tail	K7PMB9	Enterobacterial_phage	33.2	5.2e-118
WP_002211710.1|2386678_2387020_+|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	50.0	1.7e-21
WP_002213759.1|2387324_2387783_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002211709.1|2387903_2388656_+|tail	phage minor tail protein L	tail	A0A1W6JNX9	Morganella_phage	67.7	9.4e-102
WP_002211708.1|2388658_2389369_+	peptidase P60	NA	K7P6F5	Enterobacteria_phage	76.8	1.3e-108
WP_002211707.1|2389629_2390262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211706.1|2390340_2390772_-	Arc family DNA-binding protein	NA	G9L6D6	Escherichia_phage	58.4	2.5e-30
WP_002211705.1|2390895_2391063_+	hypothetical protein	NA	G9L6D7	Escherichia_phage	61.8	5.2e-13
WP_002211704.1|2391136_2392144_+	hypothetical protein	NA	A0A2H4J0P1	uncultured_Caudovirales_phage	33.0	4.1e-36
WP_002214482.1|2392242_2392794_+	zinc ribbon domain-containing protein	NA	S4TR42	Salmonella_phage	58.0	9.5e-27
WP_002211701.1|2392936_2393152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211700.1|2393207_2393828_+|tail	tail assembly protein	tail	K7PGY0	Enterobacteria_phage	57.0	3.2e-55
WP_002359202.1|2394002_2394224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211698.1|2394399_2397603_+	host specificity protein J	NA	F1C571	Cronobacter_phage	60.5	0.0e+00
WP_002211697.1|2397602_2398601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211696.1|2398617_2399535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097608205.1|2399596_2399965_+|tail	phage tail protein	tail	B6SCW7	Bacteriophage	42.0	5.0e-08
WP_002209743.1|2400185_2401394_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002214492.1|2401698_2402871_-	MFS transporter	NA	NA	NA	NA	NA
WP_002211693.1|2402874_2404074_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.6	2.4e-38
WP_002211692.1|2404090_2404831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002214494.1|2405922_2406279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002227934.1|2406695_2407226_-	disulfide bond formation protein DsbB	NA	NA	NA	NA	NA
WP_002211689.1|2407461_2409036_-	sodium/proton antiporter NhaB	NA	NA	NA	NA	NA
WP_002211688.1|2409279_2409999_+	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA	NA
WP_002211687.1|2410216_2411752_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_002211686.1|2412216_2413521_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_002216508.1|2413536_2414739_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	29.1	7.6e-29
WP_002211685.1|2415003_2415873_-	pirin family protein	NA	NA	NA	NA	NA
WP_002211684.1|2416070_2416976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002211683.1|2417010_2418129_-	DMT family transporter	NA	NA	NA	NA	NA
WP_002216501.1|2418236_2419511_-	YeaH/YhbH family protein	NA	A0A140HLI1	Bacillus_phage	37.1	1.5e-11
WP_002211681.1|2419660_2421595_-	protein kinase YeaG	NA	NA	NA	NA	NA
WP_002430110.1|2422038_2422788_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_002224141.1|2424050_2425046_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_002211677.1|2425393_2425807_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002217933.1|2425877_2426150_+	YeaC family protein	NA	NA	NA	NA	NA
WP_002211676.1|2426283_2426931_-	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L6K4	Tupanvirus	33.0	1.8e-21
WP_002211675.1|2426945_2427962_-	asparaginase	NA	NA	NA	NA	NA
WP_015683944.1|2430092_2430644_+	NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_002211671.1|2430868_2431915_+	selenide, water dikinase SelD	NA	NA	NA	NA	NA
WP_002211670.1|2431976_2433902_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	30.4	4.2e-37
WP_002211669.1|2433898_2434189_+	DUF1496 domain-containing protein	NA	NA	NA	NA	NA
WP_002211668.1|2434201_2434588_-	pyrimidine (deoxy)nucleoside triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_002211667.1|2434685_2435492_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_015683945.1|2436301_2437162_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002209743.1|2438033_2439242_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002210667.1|2439204_2440074_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	37.3	5.5e-13
WP_002210666.1|2440157_2440622_-	YchJ family protein	NA	NA	NA	NA	NA
WP_002210665.1|2441955_2442972_+	two-component system response regulator RssB	NA	NA	NA	NA	NA
WP_002210664.1|2443278_2444625_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	38.3	1.9e-81
WP_002210661.1|2445059_2445458_-	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA	NA
WP_002210659.1|2446207_2446798_+	thymidine kinase	NA	A0A1Z1LYD5	Serratia_phage	55.8	1.5e-54
WP_000255944.1|2447944_2448967_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
2463214:2463326	attR	GAGGTTATTGACAAAGTGCCCGCGACGGAGAGAACAGGCAGATCGTAAAGACGCCGTAAATACATCCATGTAGGCTCGAGCCGCGCCATCCTTGGCGCGGACGCTTTACTCCT	NA	NA	NA	NA
>prophage 10
NC_017154	Yersinia pestis D106004, complete sequence	4640720	2690469	2746283	4640720	transposase,tRNA	uncultured_virus(33.33%)	50	NA	NA
WP_002210913.1|2690469_2691585_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_002210914.1|2691642_2692269_+	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_002210915.1|2692329_2693700_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.8	2.0e-110
WP_002210916.1|2693887_2694511_+	porin family protein	NA	NA	NA	NA	NA
WP_002210917.1|2694721_2695393_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
WP_002210918.1|2695398_2696853_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_002210919.1|2696936_2698058_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002210920.1|2698290_2699526_-	peptidase T	NA	NA	NA	NA	NA
WP_002210921.1|2699855_2700692_-	NAD-dependent protein deacylase	NA	A0A2I7S9Y2	Vibrio_phage	34.0	2.6e-20
WP_002210922.1|2701674_2702922_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
WP_015683959.1|2702921_2703626_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	42.8	2.4e-35
WP_002222341.1|2703618_2704821_-	lipoprotein-releasing ABC transporter permease subunit LolC	NA	NA	NA	NA	NA
WP_002210924.1|2705090_2708537_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_002210925.1|2708775_2709315_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_002209743.1|2709644_2710853_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002213101.1|2710948_2711362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002215856.1|2711369_2711939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213097.1|2712476_2713781_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002213095.1|2714155_2714698_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002215854.1|2714825_2715845_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_002213090.1|2715927_2716794_-	thiamine kinase	NA	NA	NA	NA	NA
WP_002213089.1|2716774_2717350_-	penicillin-binding protein activator LpoB	NA	NA	NA	NA	NA
WP_002213088.1|2717390_2717780_-	YcfL family protein	NA	NA	NA	NA	NA
WP_002213087.1|2717814_2718168_-	purine nucleoside phosphoramidase	NA	NA	NA	NA	NA
WP_002215853.1|2718341_2719160_-	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002213759.1|2719602_2720061_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002213085.1|2720250_2721684_-	PTS glucose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_015683960.1|2721989_2722799_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_002213083.1|2722813_2723836_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_002213082.1|2723835_2724474_-	dTMP kinase	NA	Q2Z0N0	Pseudomonas_phage	36.1	4.6e-25
WP_002217396.1|2724463_2725489_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_002213080.1|2725777_2726584_-	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_002213775.1|2726999_2727458_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002213079.1|2727657_2728899_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_044023364.1|2728964_2729231_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	45.6	1.1e-09
WP_002210934.1|2730133_2731063_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002210933.1|2731100_2732051_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_002210932.1|2732057_2733092_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_002210931.1|2733125_2733293_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002210930.1|2733305_2733830_-	23S rRNA accumulation protein YceD	NA	NA	NA	NA	NA
WP_002210928.1|2733971_2734568_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_002213759.1|2734722_2735181_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002210927.1|2735400_2736363_-	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA	NA
WP_002354074.1|2736946_2740603_+	ribonuclease E	NA	NA	NA	NA	NA
WP_002209743.1|2740698_2741907_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002213107.1|2742183_2742471_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002213109.1|2742705_2743752_+	dihydroorotase	NA	NA	NA	NA	NA
WP_002213110.1|2744064_2744310_+	DNA damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	51.3	2.6e-13
WP_002217041.1|2744815_2745112_+	biofilm formation regulator BssS	NA	NA	NA	NA	NA
WP_002209743.1|2745074_2746283_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
>prophage 11
NC_017154	Yersinia pestis D106004, complete sequence	4640720	3223178	3292913	4640720	transposase,plate,tRNA	Escherichia_phage(28.57%)	58	NA	NA
WP_032465663.1|3223178_3224009_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_002209726.1|3224059_3225070_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002209725.1|3225239_3226367_-	4-phosphoerythronate dehydrogenase PdxB	NA	A0A285PXZ1	Cedratvirus	27.9	6.1e-20
WP_002209724.1|3226413_3227199_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002209722.1|3227424_3228342_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002209721.1|3228626_3229664_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA	NA
WP_002209720.1|3230005_3230536_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_002216161.1|3231323_3232019_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_002209716.1|3233822_3235892_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
WP_002209715.1|3236069_3236348_-	YfcL family protein	NA	NA	NA	NA	NA
WP_002209714.1|3236405_3236948_-	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_002209713.1|3237047_3237854_-	TSUP family transporter	NA	NA	NA	NA	NA
WP_002225365.1|3237857_3238685_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
WP_002209711.1|3238690_3239776_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.4	2.7e-89
WP_002209710.1|3239852_3240785_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_002227846.1|3241154_3241685_+	endonuclease SmrB	NA	NA	NA	NA	NA
WP_002209707.1|3242086_3242578_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
WP_002209705.1|3243147_3245472_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
WP_002209704.1|3245471_3246782_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
WP_002227845.1|3247068_3247365_-	YfcZ/YiiS family protein	NA	NA	NA	NA	NA
WP_002209702.1|3247778_3249044_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA	NA
WP_002209701.1|3249149_3249914_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
WP_002209700.1|3249949_3251176_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA	NA
WP_002214855.1|3251175_3251688_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA	NA
WP_002209699.1|3251684_3252251_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA	NA
WP_002209698.1|3252247_3254218_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA	NA
WP_002209697.1|3254214_3254709_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA	NA
WP_002209696.1|3254705_3255008_-	heme exporter protein CcmD	NA	NA	NA	NA	NA
WP_002209695.1|3255004_3255742_-	heme ABC transporter permease	NA	NA	NA	NA	NA
WP_002209694.1|3255804_3256464_-	heme exporter protein CcmB	NA	NA	NA	NA	NA
WP_002209693.1|3256433_3257090_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A1V0SE00	Indivirus	24.7	4.8e-09
WP_002209692.1|3257534_3258002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209691.1|3258617_3259160_+	LemA family protein	NA	NA	NA	NA	NA
WP_002209690.1|3259164_3261204_+	DUF2207 domain-containing protein	NA	NA	NA	NA	NA
WP_002209688.1|3261579_3261921_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_002209687.1|3261995_3262343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209686.1|3262367_3262847_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_002209685.1|3262943_3263750_-	ImpE family protein	NA	NA	NA	NA	NA
WP_002354537.1|3263769_3264612_-	TagK domain-containing protein	NA	NA	NA	NA	NA
WP_002209684.1|3264617_3264878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002214843.1|3267869_3271697_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_002209681.1|3271705_3272542_-	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_001297096.1|3272557_3273337_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|3273336_3274359_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002211571.1|3275037_3276387_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_002211572.1|3276390_3276930_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002211573.1|3277203_3277689_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_002211574.1|3278014_3279517_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002211575.1|3279540_3280065_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002211576.1|3280169_3280778_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_002211577.1|3280762_3281953_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_002209743.1|3281977_3283186_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002215157.1|3283207_3284758_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_002211579.1|3284885_3285647_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA	NA
WP_002211580.1|3285803_3286349_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_002215317.1|3286549_3289225_-	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	32.3	1.0e-81
WP_002211582.1|3290007_3291888_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_002211583.1|3291887_3292913_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 12
NC_017154	Yersinia pestis D106004, complete sequence	4640720	3827174	3898147	4640720	transposase,plate,tRNA,integrase	Bacillus_virus(18.75%)	60	3818548:3818564	3846605:3846621
3818548:3818564	attL	TTGTTGATAAAAAAACC	NA	NA	NA	NA
WP_002213759.1|3827174_3827633_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_000255944.1|3827743_3828766_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|3828765_3829545_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002209315.1|3829595_3830705_-	histidine kinase	NA	A0A2H4J2R8	uncultured_Caudovirales_phage	67.9	1.5e-143
WP_002209314.1|3830697_3832608_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_002209313.1|3832761_3834021_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	42.7	4.8e-82
WP_002223173.1|3834408_3835485_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_002209310.1|3836859_3838371_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	37.7	5.4e-48
WP_002209309.1|3838521_3838971_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_002209307.1|3838983_3841881_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.2e-141
WP_002223170.1|3842023_3842527_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002209303.1|3843033_3843465_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_002209302.1|3843676_3844684_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002209301.1|3844990_3845449_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_002209300.1|3847750_3848800_+	ABC transporter permease	NA	NA	NA	NA	NA
3846605:3846621	attR	TTGTTGATAAAAAAACC	NA	NA	NA	NA
WP_002209299.1|3848818_3849655_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002209298.1|3849647_3850526_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.9	7.5e-10
WP_002209297.1|3850512_3851229_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.9	2.7e-21
WP_015684021.1|3851662_3853801_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	65.1	5.7e-269
WP_025470743.1|3853977_3854442_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	K4F9T1	Cronobacter_phage	58.5	9.4e-52
WP_002209293.1|3854769_3855495_+	phosphonate metabolism transcriptional regulator PhnF	NA	NA	NA	NA	NA
WP_002209292.1|3855495_3855972_+	phosphonate C-P lyase system protein PhnG	NA	NA	NA	NA	NA
WP_002209291.1|3855971_3856598_+	phosphonate C-P lyase system protein PhnH	NA	NA	NA	NA	NA
WP_002209290.1|3856597_3857776_+	carbon-phosphorus lyase complex subunit PhnI	NA	NA	NA	NA	NA
WP_002209289.1|3857768_3858650_+	alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ	NA	NA	NA	NA	NA
WP_002209288.1|3858649_3859441_+	phosphonate C-P lyase system protein PhnK	NA	G3M9Y6	Bacillus_virus	27.7	7.0e-15
WP_002209287.1|3859829_3860549_+	phosphonate C-P lyase system protein PhnL	NA	G9BWD6	Planktothrix_phage	34.9	5.0e-20
WP_002209286.1|3860545_3861682_+	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_002209285.1|3861681_3862263_+	ribose 1,5-bisphosphokinase	NA	NA	NA	NA	NA
WP_002209284.1|3862253_3863006_+	phosphonate metabolism protein PhnP	NA	NA	NA	NA	NA
WP_002209283.1|3863018_3863657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209282.1|3863808_3864252_-	YhbP family protein	NA	NA	NA	NA	NA
WP_002209281.1|3864350_3865517_-	alginate lyase family protein	NA	NA	NA	NA	NA
WP_002209280.1|3865531_3866626_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	32.0	2.1e-25
WP_002209279.1|3866637_3867477_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002209278.1|3867495_3868380_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002209277.1|3868387_3869701_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002209276.1|3870261_3871485_+	alginate lyase family protein	NA	NA	NA	NA	NA
WP_002209275.1|3871508_3873527_+	alginate lyase	NA	NA	NA	NA	NA
WP_002209274.1|3873757_3874045_+	GIY-YIG nuclease family protein	NA	F2NZ06	Diadromus_pulchellus_ascovirus	54.1	9.6e-15
WP_002209273.1|3874219_3874726_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_002209272.1|3874719_3875241_-	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_002209270.1|3875556_3876552_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_002209269.1|3876563_3877442_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_002209268.1|3877582_3878989_-	TolC family protein	NA	NA	NA	NA	NA
WP_002209267.1|3878990_3882116_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_002209266.1|3882119_3883280_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_002214817.1|3883787_3884843_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002209263.1|3885097_3885409_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002214818.1|3885432_3885801_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002209261.1|3886036_3888031_-	DEAD/DEAH family ATP-dependent RNA helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	31.3	1.6e-52
WP_096335046.1|3888020_3888101_-	protein YrbN	NA	NA	NA	NA	NA
WP_002209260.1|3888217_3889102_-	lipoprotein NlpI	NA	NA	NA	NA	NA
WP_002209259.1|3889226_3891344_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_100067904.1|3891610_3892965_-|transposase	IS3-like element IS1661 family transposase	transposase	A0A1B1P773	Bacillus_phage	44.7	1.1e-55
WP_002228704.1|3893015_3893759_+	type VI secretion protein ImpG	NA	NA	NA	NA	NA
WP_002213885.1|3893722_3894811_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002212103.1|3894936_3896253_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_002212104.1|3896252_3896798_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002212105.1|3896800_3898147_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 13
NC_017154	Yersinia pestis D106004, complete sequence	4640720	4017700	4078328	4640720	protease,transposase	uncultured_Mediterranean_phage(14.29%)	59	NA	NA
WP_002210100.1|4017700_4019041_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_011055205.1|4019289_4019934_+	hypothetical protein	NA	A0A1B0VBK8	Salmonella_phage	49.0	3.4e-52
WP_002210102.1|4020141_4020528_+	cytochrome b562	NA	NA	NA	NA	NA
WP_002210103.1|4020759_4021170_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
WP_002210104.1|4021522_4023190_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_002215779.1|4023284_4024700_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_002210106.1|4025110_4026064_-	HTH-type transcriptional regulator TreR	NA	NA	NA	NA	NA
WP_002210107.1|4026297_4026774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210109.1|4027072_4027459_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_002210110.1|4027596_4028061_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_002210111.1|4028072_4029008_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	38.5	1.5e-48
WP_002210112.1|4029345_4029618_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA	NA
WP_002210113.1|4029614_4030469_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.0	3.2e-05
WP_002213952.1|4030774_4031257_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_002210115.1|4031685_4033119_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_002210116.1|4033180_4033906_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	1.4e-22
WP_002210117.1|4033912_4034458_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
WP_002218352.1|4034441_4035005_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_002228203.1|4035001_4035565_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	83.0	9.6e-59
WP_002210119.1|4035813_4036800_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	30.8	6.0e-40
WP_002210120.1|4036910_4037885_-	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_002210121.1|4038149_4038968_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	31.7	2.2e-19
WP_002210122.1|4039185_4039968_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
WP_002210123.1|4039972_4040530_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_002210124.1|4040542_4041166_+	phospholipid-binding protein MlaC	NA	NA	NA	NA	NA
WP_002210125.1|4041201_4041504_+	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA	NA
WP_002210126.1|4041650_4041905_+	BolA family iron metabolism protein IbaG	NA	NA	NA	NA	NA
WP_002210127.1|4042058_4043321_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002210128.1|4043501_4044590_-	outer membrane-stress sensor serine endopeptidase DegS	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	31.8	2.1e-09
WP_002213775.1|4044815_4045274_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
WP_002218066.1|4045390_4046764_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.2	7.4e-20
WP_002210130.1|4047034_4047439_-	DUF1043 family protein	NA	NA	NA	NA	NA
WP_002210131.1|4047662_4048790_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_002210132.1|4049103_4049532_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_002210133.1|4049546_4049939_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002230558.1|4049935_4050133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210135.1|4050312_4050954_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_002216203.1|4050959_4051475_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	55.6	3.6e-28
WP_002210137.1|4051627_4052113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210138.1|4052553_4053972_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002228691.1|4053981_4058439_-	glutamate synthase large subunit	NA	NA	NA	NA	NA
WP_002210140.1|4059261_4060185_+	TIGR01212 family radical SAM protein	NA	NA	NA	NA	NA
WP_002210142.1|4060448_4062785_+	aerobic respiration two-component sensor histidine kinase ArcB	NA	A0A1V0SGX0	Hokovirus	30.4	9.9e-41
WP_002210143.1|4063026_4063680_+	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA	NA
WP_002210144.1|4063676_4064402_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_002210145.1|4064608_4065184_-	divisome-associated lipoprotein YraP	NA	NA	NA	NA	NA
WP_002210146.1|4065194_4065785_-	DnaA initiator-associating protein DiaA	NA	A0A067XQR2	Caulobacter_phage	32.0	3.2e-12
WP_002210147.1|4066055_4066409_-	YraN family protein	NA	NA	NA	NA	NA
WP_002228200.1|4066492_4068466_-	penicillin-binding protein activator	NA	NA	NA	NA	NA
WP_002210149.1|4068528_4069428_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	44.4	1.0e-49
WP_002210150.1|4070364_4071069_-	pirin family protein	NA	NA	NA	NA	NA
WP_002210151.1|4071330_4072224_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000255944.1|4074084_4075107_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002210152.1|4075163_4075865_+	esterase	NA	NA	NA	NA	NA
WP_002210153.1|4076231_4076624_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_002430134.1|4076632_4076950_+	primosomal replication protein N	NA	NA	NA	NA	NA
WP_002210155.1|4076954_4077182_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_002210156.1|4077221_4077674_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_002213775.1|4077869_4078328_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	NA	NA	NA	NA
>prophage 1
NC_017153	Yersinia pestis D106004 plasmid pCD1, complete sequence	68342	0	6364	68342		Yersinia_phage(100.0%)	7	NA	NA
WP_002213403.1|1054_1447_-	YopE transcriptional regulator YerA	NA	NA	NA	NA	NA
WP_002229754.1|1640_2300_+	type III secretion system effector GTPase activator YopE	NA	NA	NA	NA	NA
WP_002213360.1|2439_2739_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002224342.1|2731_2974_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_154020274.1|3839_4076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213354.1|4235_5201_-	ParB/RepB/Spo0J family plasmid partition protein	NA	Q7Y3Y7	Yersinia_phage	56.6	3.1e-89
WP_002220902.1|5197_6364_-	plasmid-partitioning protein SopA	NA	Q7Y3Y6	Yersinia_phage	85.3	3.5e-196
>prophage 2
NC_017153	Yersinia pestis D106004 plasmid pCD1, complete sequence	68342	10650	66067	68342	transposase,protease	Enterobacteria_phage(40.0%)	58	NA	NA
WP_014462177.1|10650_11619_+|protease	T3SS effector cysteine protease YopT	protease	NA	NA	NA	NA
WP_002213004.1|11618_12017_+	type III secretion system chaperone SycT	NA	NA	NA	NA	NA
WP_002393889.1|12790_13141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_116442925.1|13889_14135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002222517.1|14376_15669_-	T3SS effector E3 ubiquitin ligase YopM	NA	NA	NA	NA	NA
WP_002229781.1|15999_16209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002212987.1|17334_18255_-	type III secretion system translocon subunit YopD	NA	NA	NA	NA	NA
WP_002212985.1|18273_19479_-	type III secretion system translocon subunit YopB	NA	NA	NA	NA	NA
WP_002222758.1|19456_19963_-	type III secretion system chaperone LcrH	NA	NA	NA	NA	NA
WP_002212981.1|19975_20956_-	type III secretion system protein LcrV	NA	NA	NA	NA	NA
WP_002212973.1|20957_21245_-	type III secretion protein LcrG	NA	NA	NA	NA	NA
WP_002220918.1|21286_21727_-	type III secretion system regulator LcrR	NA	NA	NA	NA	NA
WP_002212971.1|21723_23838_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_002229791.1|23824_24169_-	type III secretion system chaperone YscY	NA	NA	NA	NA	NA
WP_002212969.1|24165_24534_-	type III secretion system protein YscX	NA	NA	NA	NA	NA
WP_002229794.1|24530_24902_-	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_002212965.1|24888_25167_-	type III secretion system gatekeeper subunit TyeA	NA	NA	NA	NA	NA
WP_002212958.1|25147_26029_-	type III secretion system gatekeeper subunit YopN	NA	NA	NA	NA	NA
WP_002212955.1|26226_27546_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
WP_002212952.1|27542_28007_+	type III secretion system central stalk protein YscO	NA	NA	NA	NA	NA
WP_002212950.1|28006_29374_+	type III secretion system needle length determinant	NA	NA	NA	NA	NA
WP_002212948.1|29370_30294_+	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_002212947.1|30290_30944_+	type III secretion system export apparatus protein SctR	NA	NA	NA	NA	NA
WP_002212945.1|30945_31212_+	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA	NA
WP_002212938.1|31208_31994_+	type III secretion system export apparatus protein SctT	NA	NA	NA	NA	NA
WP_002212936.1|31993_33058_+	type III secretion system export apparatus switch protein YscU	NA	NA	NA	NA	NA
WP_002222527.1|33633_34029_+	type III secretion system chaperone YscW	NA	NA	NA	NA	NA
WP_002212931.1|34152_34968_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002229797.1|35046_35145_+	type III secretion system protein YscA	NA	NA	NA	NA	NA
WP_002212925.1|35370_35784_+	type III secretion system chaperone YscB	NA	NA	NA	NA	NA
WP_002212919.1|37610_38870_+	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA	NA
WP_002212917.1|38866_39067_+	EscE/YscE/SsaE family type III secretion system needle protein co-chaperone	NA	NA	NA	NA	NA
WP_002212916.1|39067_39331_+	type III secretion system needle filament subunit SctF	NA	NA	NA	NA	NA
WP_002229801.1|39332_39680_+	YscG family type III secretion protein	NA	NA	NA	NA	NA
WP_002212915.1|39676_40174_+	YopR family type III secretion effector	NA	NA	NA	NA	NA
WP_002212914.1|40174_40522_+	type III secretion system inner rod subunit SctI	NA	NA	NA	NA	NA
WP_002212912.1|40528_41263_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_002361471.1|41262_41892_+	type III secretion system sorting platform protein YscK	NA	NA	NA	NA	NA
WP_002212909.1|41870_42503_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_002212907.1|42727_43075_+	type III secretion system exported negative regulator LcrQ/YscM1	NA	NA	NA	NA	NA
WP_002213278.1|45163_46570_-	T3SS effector protein-tyrosine-phosphatase YopH	NA	NA	NA	NA	NA
WP_002213287.1|48252_49119_-	type III secretion system effector acetyltransferase YopJ	NA	NA	NA	NA	NA
WP_002213290.1|49514_51713_-	T3SS effector protein kinase YopO/YpkA	NA	NA	NA	NA	NA
WP_002229809.1|51720_52170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213291.1|52915_53155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213292.1|54327_55206_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
WP_002233140.1|55186_55261_-	RepA leader peptide Tap	NA	NA	NA	NA	NA
WP_002229817.1|55502_55757_-	replication regulatory protein RepA	NA	NA	NA	NA	NA
WP_002233137.1|55894_56143_-	phospholipase	NA	A0A1B2LRT6	Wolbachia_phage	47.1	9.2e-06
WP_002213294.1|56559_56967_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	29.2	4.7e-07
WP_002213244.1|56990_57308_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002213246.1|57479_57938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042469136.1|58006_58276_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002213256.1|60887_63203_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	51.6	1.0e-279
WP_002213258.1|63366_63918_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	80.3	5.9e-77
WP_002224338.1|63936_64401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002229829.1|64539_64869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086016640.1|64968_66067_+|transposase	IS3-like element ISYpe1 family transposase	transposase	S5WIU1	Leptospira_phage	38.5	1.4e-45
>prophage 1
NC_017155	Yersinia pestis D106004 plasmid pMT1, complete sequence	94249	86	64180	94249	transposase,tail,terminase	Salmonella_phage(92.06%)	66	NA	NA
WP_000255944.1|86_1109_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|1108_1888_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002211769.1|2021_2630_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	62.2	4.8e-64
WP_002211770.1|2931_5820_-|tail	phage tail protein	tail	J9Q6E3	Salmonella_phage	33.1	4.5e-11
WP_002211771.1|5900_6479_-	DUF4376 domain-containing protein	NA	Q9LA61	Enterobacterial_phage	38.8	3.4e-27
WP_002214118.1|6535_11167_-	DUF1983 domain-containing protein	NA	J9Q713	Salmonella_phage	88.6	0.0e+00
WP_002211773.1|11188_11776_-|tail	tail assembly protein	tail	J9Q7F8	Salmonella_phage	92.8	5.1e-103
WP_002211774.1|11763_12561_-|tail	tail protein	tail	J9Q7R4	Salmonella_phage	96.2	1.4e-156
WP_002211775.1|12553_13252_-|tail	phage minor tail protein L	tail	J9Q7Y5	Salmonella_phage	99.1	7.1e-136
WP_000440566.1|13341_13677_-|tail	phage tail protein	tail	J9Q6E1	Salmonella_phage	97.3	5.7e-59
WP_002211776.1|13718_18296_-	tape measure protein	NA	J9Q712	Salmonella_phage	90.5	0.0e+00
WP_000952684.1|18303_18528_-	hypothetical protein	NA	J9Q7F7	Salmonella_phage	100.0	4.2e-34
WP_000163862.1|18653_18971_-	hypothetical protein	NA	J9Q7R3	Salmonella_phage	98.1	6.0e-50
WP_002211778.1|19030_19777_-	Ig domain-containing protein	NA	J9Q7Y4	Salmonella_phage	98.8	5.2e-129
WP_002211779.1|19851_20235_-	hypothetical protein	NA	J9Q6D8	Salmonella_phage	98.4	1.1e-66
WP_002211780.1|20236_20710_-	hypothetical protein	NA	J9Q711	Salmonella_phage	99.4	8.9e-82
WP_001027662.1|20700_21045_-	hypothetical protein	NA	J9Q7F6	Salmonella_phage	100.0	1.9e-57
WP_002211781.1|21142_21976_-	hypothetical protein	NA	J9Q7R2	Salmonella_phage	99.6	2.9e-152
WP_002211782.1|21975_22410_-	hypothetical protein	NA	J9Q7Y3	Salmonella_phage	99.3	3.1e-73
WP_002211783.1|22453_23116_-	Ig domain-containing protein	NA	J9Q6D6	Salmonella_phage	97.2	8.5e-107
WP_002211784.1|23190_24066_-	hypothetical protein	NA	J9Q710	Salmonella_phage	99.7	8.5e-163
WP_002211785.1|24092_24926_-	hypothetical protein	NA	J9Q7F4	Salmonella_phage	91.3	5.8e-137
WP_014462191.1|24948_26523_-	hypothetical protein	NA	J9Q7R1	Salmonella_phage	99.0	1.6e-300
WP_002211787.1|26556_27813_-|terminase	terminase	terminase	J9Q7Y2	Salmonella_phage	100.0	1.8e-251
WP_002211788.1|27815_28457_-	hypothetical protein	NA	J9Q6D4	Salmonella_phage	98.1	1.2e-108
WP_000176291.1|28652_28919_-	hypothetical protein	NA	J9Q757	Salmonella_phage	100.0	1.3e-42
WP_002211789.1|28928_29819_-	hypothetical protein	NA	J9Q7I6	Salmonella_phage	99.7	6.2e-169
WP_002211790.1|29824_30079_-	hypothetical protein	NA	J9Q7U0	Salmonella_phage	97.6	2.0e-40
WP_002211791.1|30071_30710_-	ATP-binding cassette domain-containing protein	NA	J9Q807	Salmonella_phage	98.1	4.7e-110
WP_014462192.1|30706_31375_-	ParB N-terminal domain-containing protein	NA	J9Q6L1	Salmonella_phage	98.2	1.2e-113
WP_002228791.1|31374_32073_-	ParB N-terminal domain-containing protein	NA	J9Q756	Salmonella_phage	98.7	9.6e-125
WP_002211794.1|32137_33697_+	DEAD/DEAH box helicase	NA	J9Q7I4	Salmonella_phage	99.0	1.1e-293
WP_044023438.1|33699_33978_+	hypothetical protein	NA	J9Q7T9	Salmonella_phage	96.7	4.9e-40
WP_002211796.1|34037_34460_+	hypothetical protein	NA	J9Q806	Salmonella_phage	85.0	4.1e-62
WP_002214134.1|34464_34992_+	transcriptional regulator	NA	J9Q6L0	Salmonella_phage	98.0	6.4e-81
WP_002211799.1|35314_35965_+	hypothetical protein	NA	J9Q754	Salmonella_phage	99.5	4.1e-114
WP_002214137.1|36049_36277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211801.1|36915_37398_-	hypothetical protein	NA	J9Q805	Salmonella_phage	94.4	5.1e-85
WP_002211802.1|37603_37885_-	hypothetical protein	NA	J9Q753	Salmonella_phage	93.5	6.1e-46
WP_002213759.1|38084_38543_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	35.3	5.0e-13
WP_002214145.1|38751_39321_-	hypothetical protein	NA	J9Q7Z7	Salmonella_phage	100.0	5.8e-104
WP_002213303.1|39333_40080_-	hypothetical protein	NA	J9Q6J5	Salmonella_phage	96.4	4.1e-134
WP_038918515.1|40069_40429_-	hypothetical protein	NA	J9Q741	Salmonella_phage	100.0	5.2e-58
WP_002213300.1|42215_43301_-	exonuclease	NA	J9Q7S9	Salmonella_phage	98.6	7.7e-206
WP_002213298.1|43716_44739_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002214160.1|45098_45743_-	hypothetical protein	NA	J9Q739	Salmonella_phage	98.1	1.8e-122
WP_002214164.1|46487_47552_+	replication protein RepA	NA	J9Q7H0	Salmonella_phage	98.6	2.4e-188
WP_002222711.1|48120_48333_-	hypothetical protein	NA	J9Q7S8	Salmonella_phage	95.7	6.8e-34
WP_002227818.1|48332_48668_-	hypothetical protein	NA	J9Q7Z5	Salmonella_phage	91.0	5.2e-52
WP_002228796.1|48664_48844_-	hypothetical protein	NA	J9Q6J1	Salmonella_phage	86.4	5.8e-18
WP_002228797.1|48884_49160_-	hypothetical protein	NA	J9Q738	Salmonella_phage	95.6	1.7e-45
WP_002222869.1|49227_49638_-	hypothetical protein	NA	J9Q7G9	Salmonella_phage	97.8	4.1e-75
WP_002222868.1|49621_49993_-	DUF2591 domain-containing protein	NA	J9Q7S7	Salmonella_phage	87.8	4.0e-61
WP_002222866.1|50146_50977_-	hypothetical protein	NA	J9Q7Z4	Salmonella_phage	98.6	9.3e-127
WP_002213439.1|50980_51181_-	hypothetical protein	NA	J9Q6J0	Salmonella_phage	97.0	1.1e-25
WP_161597819.1|51271_52303_-	recombinase	NA	J9Q736	Salmonella_phage	99.1	6.9e-196
WP_000920226.1|52350_52617_-	hypothetical protein	NA	J9Q7G8	Salmonella_phage	100.0	1.6e-40
WP_079993611.1|52616_53555_-	exonuclease	NA	J9Q7S6	Salmonella_phage	99.0	2.2e-177
WP_002213132.1|53619_54648_-	hypothetical protein	NA	J9Q7Z3	Salmonella_phage	98.5	1.3e-165
WP_002213135.1|54767_55199_-	hypothetical protein	NA	J9Q6I8	Salmonella_phage	98.6	2.6e-72
WP_002215095.1|55419_55671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213141.1|55743_56307_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	64.6	2.2e-63
WP_002425587.1|56336_56762_-	hypothetical protein	NA	J9Q7S4	Salmonella_phage	100.0	7.5e-72
WP_002221186.1|56776_60301_-	DNA polymerase III subunit alpha	NA	J9Q7Z2	Salmonella_phage	99.2	0.0e+00
WP_002211767.1|60481_61717_-	AAA domain-containing protein	NA	J9Q733	Salmonella_phage	99.3	3.0e-238
WP_002211766.1|61813_64180_-	porphyrin biosynthesis protein	NA	J9Q7G6	Salmonella_phage	94.4	0.0e+00
