assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022565.1_ASM2256v1	NC_012483	Acidobacterium capsulatum ATCC 51196, complete sequence	1	894165-895723	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	Type I-C,Type I-U, Type I-U?	GTTTCAATCCACGCGCCCGCGAGGGGCGCGAC,GTTTCAATCCACGCGCCCGCGAGGGGCGCGAC,GTTTCAATCCACGCGCCCGCGAGGGGCGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	23,23,23	23	TypeI-C,TypeI-U,TypeI-U?	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	NA|391aa|up_8|NC_012483.1_877425_878598_+,NA|67aa|down_6|NC_012483.1_901448_901649_-	NA|329aa|up_9|NC_012483.1_876287_877274_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|391aa|up_8|NC_012483.1_877425_878598_+	NA	NA|325aa|up_7|NC_012483.1_878766_879741_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|146aa|up_6|NC_012483.1_879998_880436_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|155aa|up_5|NC_012483.1_881176_881641_-	COG3918, COG3918, Predicted membrane protein [Function unknown]	NA|193aa|up_4|NC_012483.1_881764_882343_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|159aa|up_3|NC_012483.1_883284_883761_-	pfam09339, HTH_IclR, IclR helix-turn-helix domain	NA|846aa|up_2|NC_012483.1_883799_886337_-	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|1136aa|up_1|NC_012483.1_886430_889838_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|1137aa|up_0|NC_012483.1_890466_893877_+	pfam17132, Glyco_hydro_106, alpha-L-rhamnosidase	cas2|98aa|down_0|NC_012483.1_895883_896177_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_012483.1_896210_897242_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|212aa|down_2|NC_012483.1_897238_897874_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas7b|304aa|down_3|NC_012483.1_897946_898858_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|619aa|down_4|NC_012483.1_898854_900711_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|242aa|down_5|NC_012483.1_900692_901418_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|67aa|down_6|NC_012483.1_901448_901649_-	NA	cas3|772aa|down_7|NC_012483.1_901814_904130_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|485aa|down_8|NC_012483.1_907256_908711_+	PRK10077, xylE, D-xylose transporter XylE; Provisional	NA|354aa|down_9|NC_012483.1_908796_909858_-	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_000022565.1_ASM2256v1	NC_012483	Acidobacterium capsulatum ATCC 51196, complete sequence	2	1055508-1055695	2	CRISPRCasFinder	no		cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	Orphan	AATGTGAATGGGGATTCGCATTTTC	25	0	0	NA	NA	NA	2	2	Orphan	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	NA|91aa|up_2|NC_012483.1_1052710_1052983_-,NA|60aa|down_6|NC_012483.1_1069623_1069803_-,NA|177aa|down_8|NC_012483.1_1071332_1071863_+	NA|212aa|up_9|NC_012483.1_1047882_1048518_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|292aa|up_8|NC_012483.1_1048548_1049424_-	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like	NA|211aa|up_7|NC_012483.1_1049532_1050165_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|147aa|up_6|NC_012483.1_1050176_1050617_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|137aa|up_5|NC_012483.1_1050613_1051024_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|350aa|up_4|NC_012483.1_1051074_1052124_-	TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB	NA|149aa|up_3|NC_012483.1_1052257_1052704_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|91aa|up_2|NC_012483.1_1052710_1052983_-	NA	NA|304aa|up_1|NC_012483.1_1053016_1053928_-	COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]	NA|173aa|up_0|NC_012483.1_1054156_1054675_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|413aa|down_0|NC_012483.1_1056502_1057741_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|419aa|down_1|NC_012483.1_1058026_1059283_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|570aa|down_2|NC_012483.1_1059396_1061106_-	pfam01229, Glyco_hydro_39, Glycosyl hydrolases family 39	NA|693aa|down_3|NC_012483.1_1061203_1063282_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|1282aa|down_4|NC_012483.1_1063694_1067540_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|489aa|down_5|NC_012483.1_1068011_1069478_+	pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum	NA|60aa|down_6|NC_012483.1_1069623_1069803_-	NA	NA|378aa|down_7|NC_012483.1_1070038_1071172_-	TIGR03700, mena_SCO4494, putative menaquinone biosynthesis radical SAM enzyme, SCO4494 family	NA|177aa|down_8|NC_012483.1_1071332_1071863_+	NA	NA|153aa|down_9|NC_012483.1_1072054_1072513_-	COG0456, RimI, Acetyltransferases [General function prediction only]
GCF_000022565.1_ASM2256v1	NC_012483	Acidobacterium capsulatum ATCC 51196, complete sequence	3	2539434-2539633	2	PILER-CR	no		cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	Orphan	ATGTTCCACGTGGAACAT	18	0	0	NA	NA	NA	3	3	Orphan	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	NA|95aa|up_5|NC_012483.1_2532379_2532664_-,NA|195aa|down_6|NC_012483.1_2545639_2546224_+	NA|166aa|up_9|NC_012483.1_2527068_2527566_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|682aa|up_8|NC_012483.1_2527662_2529708_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|395aa|up_7|NC_012483.1_2529704_2530889_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|329aa|up_6|NC_012483.1_2530885_2531872_+	pfam13614, AAA_31, AAA domain	NA|95aa|up_5|NC_012483.1_2532379_2532664_-	NA	NA|127aa|up_4|NC_012483.1_2532672_2533053_-	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|223aa|up_3|NC_012483.1_2534846_2535515_-	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III	NA|445aa|up_2|NC_012483.1_2535864_2537199_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|273aa|up_1|NC_012483.1_2537195_2538014_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|250aa|up_0|NC_012483.1_2538054_2538804_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|284aa|down_0|NC_012483.1_2539851_2540703_+	pfam13614, AAA_31, AAA domain	NA|311aa|down_1|NC_012483.1_2540781_2541714_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|386aa|down_2|NC_012483.1_2541783_2542941_-	cd03821, GT4_Bme6-like, Brucella melitensis Bme6 and similar proteins	NA|169aa|down_3|NC_012483.1_2543021_2543528_-	pfam13430, DUF4112, Domain of unknown function (DUF4112)	NA|241aa|down_4|NC_012483.1_2543781_2544504_+	pfam01904, DUF72, Protein of unknown function DUF72	NA|355aa|down_5|NC_012483.1_2544585_2545650_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|195aa|down_6|NC_012483.1_2545639_2546224_+	NA	NA|329aa|down_7|NC_012483.1_2546253_2547240_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|499aa|down_8|NC_012483.1_2547289_2548786_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|187aa|down_9|NC_012483.1_2548814_2549375_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]
GCF_000022565.1_ASM2256v1	NC_012483	Acidobacterium capsulatum ATCC 51196, complete sequence	4	2842092-2842179	3	CRISPRCasFinder	no	csa3	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	Type I-A	AAAACACTGGGCTTTGGCCCCTGA	24	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	NA|127aa|up_1|NC_012483.1_2840146_2840527_+,NA|352aa|up_0|NC_012483.1_2840850_2841906_+,NA	NA|204aa|up_9|NC_012483.1_2829155_2829767_+	cd03471, Rieske_cytochrome_b6f, Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer	NA|518aa|up_8|NC_012483.1_2829754_2831308_+	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion]	NA|87aa|up_7|NC_012483.1_2831389_2831650_-	pfam05154, TM2, TM2 domain	NA|643aa|up_6|NC_012483.1_2831917_2833846_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|560aa|up_5|NC_012483.1_2834085_2835765_-	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|235aa|up_4|NC_012483.1_2836271_2836976_+	pfam14344, DUF4397, Domain of unknown function (DUF4397)	NA|414aa|up_3|NC_012483.1_2837101_2838343_+	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE	NA|428aa|up_2|NC_012483.1_2838403_2839687_+	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE	NA|127aa|up_1|NC_012483.1_2840146_2840527_+	NA	NA|352aa|up_0|NC_012483.1_2840850_2841906_+	NA	NA|550aa|down_0|NC_012483.1_2842422_2844072_+	PRK05380, pyrG, CTP synthetase; Validated	NA|311aa|down_1|NC_012483.1_2844177_2845110_-	pfam00665, rve, Integrase core domain	NA|426aa|down_2|NC_012483.1_2845372_2846650_-	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains	csa3|85aa|down_3|NC_012483.1_2847115_2847370_+	pfam12840, HTH_20, Helix-turn-helix domain	NA|250aa|down_4|NC_012483.1_2847477_2848227_+	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|363aa|down_5|NC_012483.1_2848386_2849475_-	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|81aa|down_6|NC_012483.1_2849561_2849804_-	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|435aa|down_7|NC_012483.1_2849921_2851226_+	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|197aa|down_8|NC_012483.1_2851222_2851813_+	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|353aa|down_9|NC_012483.1_2851927_2852986_-	pfam02517, Abi, CAAX protease self-immunity
GCF_000022565.1_ASM2256v1	NC_012483	Acidobacterium capsulatum ATCC 51196, complete sequence	5	3452305-3452400	4	CRISPRCasFinder	no		cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	Orphan	AGCCATTGTGGAGGAGATGGACCC	24	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	NA|157aa|up_6|NC_012483.1_3446050_3446521_+,NA|112aa|up_0|NC_012483.1_3451108_3451444_+,NA	NA|225aa|up_9|NC_012483.1_3443272_3443947_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|285aa|up_8|NC_012483.1_3444046_3444901_+	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|329aa|up_7|NC_012483.1_3444971_3445958_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|157aa|up_6|NC_012483.1_3446050_3446521_+	NA	NA|304aa|up_5|NC_012483.1_3446595_3447507_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|276aa|up_4|NC_012483.1_3447728_3448556_+	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|488aa|up_3|NC_012483.1_3448552_3450016_+	cd03788, GT20_TPS, trehalose-6-phosphate synthase	NA|116aa|up_2|NC_012483.1_3450085_3450433_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|147aa|up_1|NC_012483.1_3450448_3450889_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|112aa|up_0|NC_012483.1_3451108_3451444_+	NA	NA|413aa|down_0|NC_012483.1_3452925_3454164_+	pfam01566, Nramp, Natural resistance-associated macrophage protein	NA|144aa|down_1|NC_012483.1_3454164_3454596_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|267aa|down_2|NC_012483.1_3454629_3455430_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|244aa|down_3|NC_012483.1_3455445_3456177_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|319aa|down_4|NC_012483.1_3456287_3457244_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|304aa|down_5|NC_012483.1_3457261_3458173_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|998aa|down_6|NC_012483.1_3458254_3461248_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_7|NC_012483.1_3461423_3461996_-	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|344aa|down_8|NC_012483.1_3462123_3463155_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|78aa|down_9|NC_012483.1_3463172_3463406_-	cd01716, Hfq, bacterial Hfq-like
GCF_000022565.1_ASM2256v1	NC_012483	Acidobacterium capsulatum ATCC 51196, complete sequence	6	3527663-3527849	5	CRISPRCasFinder	no		cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	Orphan	GGGTAAATGTGAATGCGGAATCAC	24	0	0	NA	NA	NA	2	2	Orphan	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT	NA|188aa|up_6|NC_012483.1_3521480_3522044_-,NA|56aa|down_0|NC_012483.1_3528080_3528248_-,NA|58aa|down_1|NC_012483.1_3528367_3528541_-	NA|135aa|up_9|NC_012483.1_3518599_3519004_+	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional	NA|409aa|up_8|NC_012483.1_3519051_3520278_+	cd17328, MFS_spinster_like, Protein spinster and spinster homologs of the Major Facilitator Superfamily of transporters	NA|397aa|up_7|NC_012483.1_3520274_3521465_+	TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB	NA|188aa|up_6|NC_012483.1_3521480_3522044_-	NA	NA|417aa|up_5|NC_012483.1_3522138_3523389_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|472aa|up_4|NC_012483.1_3523579_3524995_+	COG5520, COG5520, O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]	NA|218aa|up_3|NC_012483.1_3525069_3525723_+	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs	NA|144aa|up_2|NC_012483.1_3525873_3526305_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|179aa|up_1|NC_012483.1_3526376_3526913_+	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|184aa|up_0|NC_012483.1_3526995_3527547_+	TIGR00777, AhpD_protein	NA|56aa|down_0|NC_012483.1_3528080_3528248_-	NA	NA|58aa|down_1|NC_012483.1_3528367_3528541_-	NA	NA|339aa|down_2|NC_012483.1_3528689_3529706_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|323aa|down_3|NC_012483.1_3529894_3530863_+	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA|215aa|down_4|NC_012483.1_3530879_3531524_+	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA|381aa|down_5|NC_012483.1_3533667_3534810_+	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion]	NA|579aa|down_6|NC_012483.1_3534809_3536546_+	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase	NA|265aa|down_7|NC_012483.1_3536549_3537344_+	COG1969, HyaC, Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]	NA|171aa|down_8|NC_012483.1_3537330_3537843_+	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group	NA|116aa|down_9|NC_012483.1_3537847_3538195_+	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA
