assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022045.1_ASM2204v1	NC_011880	Cyanothece sp. PCC 7425 plasmid pP742501, complete sequence	1	48240-54633	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,cas1,cas2	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,cas1,cas2,DEDDh,WYL,PD-DExK	Type III-A,Type III-B,Type III-C,Type III-D	GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC,GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC,GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	87,87,85	87	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	csx1|521aa|up_8|NC_011880.1_40039_41602_+,NA|231aa|up_6|NC_011880.1_42550_43243_+,NA|2594aa|down_5|NC_011880.1_65699_73481_-,NA|1410aa|down_6|NC_011880.1_73576_77806_-,NA|77aa|down_7|NC_011880.1_77811_78042_-,NA|164aa|down_9|NC_011880.1_78652_79144_-	NA|561aa|up_9|NC_011880.1_38354_40037_+	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	csx1|521aa|up_8|NC_011880.1_40039_41602_+	NA	NA|196aa|up_7|NC_011880.1_41697_42285_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|231aa|up_6|NC_011880.1_42550_43243_+	NA	NA|319aa|up_5|NC_011880.1_43334_44291_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|114aa|up_4|NC_011880.1_44745_45087_+	pfam05685, Uma2, Putative restriction endonuclease	NA|129aa|up_3|NC_011880.1_45574_45961_-	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|111aa|up_2|NC_011880.1_46029_46362_+	pfam05685, Uma2, Putative restriction endonuclease	cas1|330aa|up_1|NC_011880.1_46773_47763_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|93aa|up_0|NC_011880.1_47766_48045_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|626aa|down_0|NC_011880.1_54647_56525_-	pfam09369, DUF1998, Domain of unknown function (DUF1998)	NA|1324aa|down_1|NC_011880.1_56542_60514_-	cd18785, SF2_C, C-terminal helicase domain of superfamily 2 DEAD/H-box helicases	NA|696aa|down_2|NC_011880.1_60510_62598_-	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain	NA|85aa|down_3|NC_011880.1_62676_62931_-	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	NA|895aa|down_4|NC_011880.1_63002_65687_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|2594aa|down_5|NC_011880.1_65699_73481_-	NA	NA|1410aa|down_6|NC_011880.1_73576_77806_-	NA	NA|77aa|down_7|NC_011880.1_77811_78042_-	NA	NA|186aa|down_8|NC_011880.1_78055_78613_-	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family	NA|164aa|down_9|NC_011880.1_78652_79144_-	NA
GCF_000022045.1_ASM2204v1	NC_011880	Cyanothece sp. PCC 7425 plasmid pP742501, complete sequence	2	96801-97206	2,2,2	CRISPRCasFinder,PILER-CR,CRT	no	DEDDh,WYL	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,cas1,cas2,DEDDh,WYL,PD-DExK	Unclear	GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC,TACTTGTTAGGAAAACCAATTGAATGGAAA,TAGGNAAACCAATTGAATGGAAA	36,30,23	0	0	NA	NA	NA:NA:NA	5,5,5	5	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|216aa|up_8|NC_011880.1_85027_85675_+,NA|159aa|up_7|NC_011880.1_85767_86244_+,NA|379aa|up_2|NC_011880.1_92828_93965_+,NA|450aa|up_1|NC_011880.1_93976_95326_+,NA|132aa|down_4|NC_011880.1_101191_101587_-,NA|170aa|down_7|NC_011880.1_103970_104480_-,NA|196aa|down_8|NC_011880.1_104482_105070_-	NA|633aa|up_9|NC_011880.1_83081_84980_+	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|216aa|up_8|NC_011880.1_85027_85675_+	NA	NA|159aa|up_7|NC_011880.1_85767_86244_+	NA	DEDDh|813aa|up_6|NC_011880.1_86299_88738_+	smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases	NA|312aa|up_5|NC_011880.1_88824_89760_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|205aa|up_4|NC_011880.1_89756_90371_+	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]	WYL|749aa|up_3|NC_011880.1_90478_92725_+	pfam13671, AAA_33, AAA domain	NA|379aa|up_2|NC_011880.1_92828_93965_+	NA	NA|450aa|up_1|NC_011880.1_93976_95326_+	NA	NA|455aa|up_0|NC_011880.1_95348_96713_+	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]	NA|267aa|down_0|NC_011880.1_97283_98084_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|355aa|down_1|NC_011880.1_99298_100363_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|80aa|down_2|NC_011880.1_100699_100939_+	pfam08974, DUF1877, Domain of unknown function (DUF1877)	NA|77aa|down_3|NC_011880.1_100957_101188_+	pfam08974, DUF1877, Domain of unknown function (DUF1877)	NA|132aa|down_4|NC_011880.1_101191_101587_-	NA	NA|244aa|down_5|NC_011880.1_101598_102330_-	TIGR04211, hypothetical_protein, SH3 domain protein	NA|355aa|down_6|NC_011880.1_102629_103694_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|170aa|down_7|NC_011880.1_103970_104480_-	NA	NA|196aa|down_8|NC_011880.1_104482_105070_-	NA	NA|357aa|down_9|NC_011880.1_105105_106176_-	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins
GCF_000022045.1_ASM2204v1	NC_011880	Cyanothece sp. PCC 7425 plasmid pP742501, complete sequence	3	98160-99155	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,WYL	cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,cas1,cas2,DEDDh,WYL,PD-DExK	Unclear	GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC,GTCCCTACTTGTTAGGGAAANCAATTGAATGGAAAC,GTCCCTACTTGTTAGGGAAATCAATTGAATGGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	13,13,11	13	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|216aa|up_9|NC_011880.1_85027_85675_+,NA|159aa|up_8|NC_011880.1_85767_86244_+,NA|379aa|up_3|NC_011880.1_92828_93965_+,NA|450aa|up_2|NC_011880.1_93976_95326_+,NA|132aa|down_3|NC_011880.1_101191_101587_-,NA|170aa|down_6|NC_011880.1_103970_104480_-,NA|196aa|down_7|NC_011880.1_104482_105070_-	NA|216aa|up_9|NC_011880.1_85027_85675_+	NA	NA|159aa|up_8|NC_011880.1_85767_86244_+	NA	DEDDh|813aa|up_7|NC_011880.1_86299_88738_+	smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases	NA|312aa|up_6|NC_011880.1_88824_89760_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|205aa|up_5|NC_011880.1_89756_90371_+	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]	WYL|749aa|up_4|NC_011880.1_90478_92725_+	pfam13671, AAA_33, AAA domain	NA|379aa|up_3|NC_011880.1_92828_93965_+	NA	NA|450aa|up_2|NC_011880.1_93976_95326_+	NA	NA|455aa|up_1|NC_011880.1_95348_96713_+	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]	NA|267aa|up_0|NC_011880.1_97283_98084_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|355aa|down_0|NC_011880.1_99298_100363_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|80aa|down_1|NC_011880.1_100699_100939_+	pfam08974, DUF1877, Domain of unknown function (DUF1877)	NA|77aa|down_2|NC_011880.1_100957_101188_+	pfam08974, DUF1877, Domain of unknown function (DUF1877)	NA|132aa|down_3|NC_011880.1_101191_101587_-	NA	NA|244aa|down_4|NC_011880.1_101598_102330_-	TIGR04211, hypothetical_protein, SH3 domain protein	NA|355aa|down_5|NC_011880.1_102629_103694_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|170aa|down_6|NC_011880.1_103970_104480_-	NA	NA|196aa|down_7|NC_011880.1_104482_105070_-	NA	NA|357aa|down_8|NC_011880.1_105105_106176_-	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|75aa|down_9|NC_011880.1_106266_106491_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	1	8938-9047	1	CRISPRCasFinder	no		csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Orphan	TTCCAGATCGGCAAGTTGTTGTTGCAGGG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA,NA|203aa|down_3|NC_011884.1_12891_13500_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|461aa|up_4|NC_011884.1_47_1430_+	PRK00149, dnaA, chromosomal replication initiator protein DnaA	NA|375aa|up_3|NC_011884.1_1921_3046_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|449aa|up_2|NC_011884.1_4273_5620_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|376aa|up_1|NC_011884.1_5619_6747_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|438aa|up_0|NC_011884.1_6679_7993_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|205aa|down_0|NC_011884.1_9695_10310_+	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)	NA|512aa|down_1|NC_011884.1_10566_12102_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|219aa|down_2|NC_011884.1_12183_12840_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|203aa|down_3|NC_011884.1_12891_13500_-	NA	NA|148aa|down_4|NC_011884.1_13524_13968_-	COG3565, COG3565, Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]	NA|368aa|down_5|NC_011884.1_14132_15236_+	PRK14457, PRK14457, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA|359aa|down_6|NC_011884.1_15385_16462_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|315aa|down_7|NC_011884.1_16465_17410_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|741aa|down_8|NC_011884.1_17476_19699_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|285aa|down_9|NC_011884.1_19768_20623_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	2	687489-687603	2	CRISPRCasFinder	no		csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Orphan	ATCGCCAGCCCGATTTGCGCCAACCGGCCTTTGACCGAAC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA,NA|123aa|down_1|NC_011884.1_690036_690405_+,NA|58aa|down_6|NC_011884.1_695082_695256_+	NA|351aa|up_9|NC_011884.1_676928_677981_-	cd07302, CHD, cyclase homology domain	NA|404aa|up_8|NC_011884.1_678074_679286_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|619aa|up_7|NC_011884.1_679568_681425_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|38aa|up_6|NC_011884.1_681439_681553_-	PRK04989, psbM, photosystem II reaction center protein M; Provisional	NA|99aa|up_5|NC_011884.1_681622_681919_-	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|511aa|up_4|NC_011884.1_682303_683836_+	CHL00062, psbB, photosystem II 47 kDa protein	NA|33aa|up_3|NC_011884.1_683859_683958_+	pfam01405, PsbT, Photosystem II reaction centre T protein	NA|189aa|up_2|NC_011884.1_684047_684614_+	pfam05685, Uma2, Putative restriction endonuclease	NA|290aa|up_1|NC_011884.1_684692_685562_+	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	NA|247aa|up_0|NC_011884.1_685619_686360_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|476aa|down_0|NC_011884.1_688334_689762_-	pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family	NA|123aa|down_1|NC_011884.1_690036_690405_+	NA	NA|422aa|down_2|NC_011884.1_690450_691716_+	COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]	NA|290aa|down_3|NC_011884.1_691779_692649_+	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|234aa|down_4|NC_011884.1_693863_694565_-	cd15240, 7tm_ASR-like, Anabaena sensory rhodopsin and similar proteins, member of the seven-transmembrane GPCR superfamily	NA|98aa|down_5|NC_011884.1_694582_694876_-	PRK13216, PRK13216, photosystem I reaction center subunit X-like protein; Reviewed	NA|58aa|down_6|NC_011884.1_695082_695256_+	NA	NA|226aa|down_7|NC_011884.1_695236_695914_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|154aa|down_8|NC_011884.1_695938_696400_-	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]	NA|307aa|down_9|NC_011884.1_696489_697410_+	sd00006, TPR, Tetratricopeptide repeat
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	3	1168028-1168129	3	CRISPRCasFinder	no	PD-DExK	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Unclear	AACCACGTAGCGAAGGGCAGCTTGCTGCATCGCC	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|62aa|up_9|NC_011884.1_1159097_1159283_+,PD-DExK|204aa|up_7|NC_011884.1_1162689_1163301_-,NA|27aa|down_2|NC_011884.1_1169225_1169306_-,NA|259aa|down_6|NC_011884.1_1174740_1175517_+	NA|62aa|up_9|NC_011884.1_1159097_1159283_+	NA	NA|493aa|up_8|NC_011884.1_1159245_1160724_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	PD-DExK|204aa|up_7|NC_011884.1_1162689_1163301_-	NA	NA|332aa|up_6|NC_011884.1_1163437_1164433_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|60aa|up_5|NC_011884.1_1164449_1164629_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|105aa|up_4|NC_011884.1_1164721_1165036_-	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|369aa|up_3|NC_011884.1_1165439_1166546_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|76aa|up_2|NC_011884.1_1166606_1166834_+	CHL00191, ycf61, DNA-directed RNA polymerase subunit omega; Provisional	NA|225aa|up_1|NC_011884.1_1166883_1167558_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|122aa|up_0|NC_011884.1_1167590_1167956_+	pfam08848, DUF1818, Domain of unknown function (DUF1818)	NA|76aa|down_0|NC_011884.1_1168147_1168375_-	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|71aa|down_1|NC_011884.1_1168367_1168580_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|27aa|down_2|NC_011884.1_1169225_1169306_-	NA	NA|418aa|down_3|NC_011884.1_1170607_1171861_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|614aa|down_4|NC_011884.1_1172128_1173970_+	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|209aa|down_5|NC_011884.1_1174014_1174641_+	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|259aa|down_6|NC_011884.1_1174740_1175517_+	NA	NA|384aa|down_7|NC_011884.1_1175523_1176675_+	pfam14258, DUF4350, Domain of unknown function (DUF4350)	NA|295aa|down_8|NC_011884.1_1176791_1177676_+	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein	NA|609aa|down_9|NC_011884.1_1177684_1179511_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	4	1262835-1263015	4	CRISPRCasFinder	no		csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Orphan	GCTCTATCCCTGGAAGATATTTTTG	25	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA,NA|178aa|down_0|NC_011884.1_1265236_1265770_+,NA|142aa|down_2|NC_011884.1_1266687_1267113_-,NA|183aa|down_6|NC_011884.1_1270977_1271526_+	NA|261aa|up_9|NC_011884.1_1251080_1251863_+	pfam11209, DUF2993, Protein of unknown function (DUF2993)	NA|318aa|up_8|NC_011884.1_1251963_1252917_-	PRK02693, PRK02693, apocytochrome f; Reviewed	NA|180aa|up_7|NC_011884.1_1252935_1253475_-	PRK13474, PRK13474, cytochrome b6-f complex iron-sulfur subunit; Provisional	NA|106aa|up_6|NC_011884.1_1253663_1253981_+	pfam11267, DUF3067, Domain of unknown function (DUF3067)	NA|385aa|up_5|NC_011884.1_1254348_1255503_+	cd17602, REC_PatA-like, phosphoacceptor receiver (REC) domain of PatA and similar domains	NA|120aa|up_4|NC_011884.1_1255670_1256030_+	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|120aa|up_3|NC_011884.1_1256106_1256466_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|192aa|up_2|NC_011884.1_1256538_1257114_+	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|788aa|up_1|NC_011884.1_1257139_1259503_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|769aa|up_0|NC_011884.1_1259600_1261907_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|178aa|down_0|NC_011884.1_1265236_1265770_+	NA	NA|279aa|down_1|NC_011884.1_1265766_1266603_-	CHL00182, tatC, Sec-independent translocase component C; Provisional	NA|142aa|down_2|NC_011884.1_1266687_1267113_-	NA	NA|134aa|down_3|NC_011884.1_1267449_1267851_-	cd17535, REC_NarL-like, phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators	NA|221aa|down_4|NC_011884.1_1268139_1268802_-	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	NA|592aa|down_5|NC_011884.1_1268940_1270716_+	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|183aa|down_6|NC_011884.1_1270977_1271526_+	NA	NA|401aa|down_7|NC_011884.1_1271646_1272849_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|412aa|down_8|NC_011884.1_1274197_1275433_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|497aa|down_9|NC_011884.1_1275449_1276940_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	5	1397040-1397187	5	CRISPRCasFinder	no		csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Orphan	GTACACTCTGGCTGAAACCCCTTCCCTCAAGTCCCCGGAAGTTACACCGGCC	52	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|82aa|up_7|NC_011884.1_1385141_1385387_-,NA|70aa|down_3|NC_011884.1_1401978_1402188_+,NA|120aa|down_5|NC_011884.1_1403853_1404213_+	NA|424aa|up_9|NC_011884.1_1383036_1384308_+	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|265aa|up_8|NC_011884.1_1384304_1385099_+	cd02978, KaiB_like, KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA	NA|82aa|up_7|NC_011884.1_1385141_1385387_-	NA	NA|480aa|up_6|NC_011884.1_1385408_1386848_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|759aa|up_5|NC_011884.1_1386844_1389121_-	cd07302, CHD, cyclase homology domain	NA|1005aa|up_4|NC_011884.1_1389389_1392404_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|189aa|up_3|NC_011884.1_1392957_1393524_+	pfam14218, COP23, Circadian oscillating protein COP23	NA|198aa|up_2|NC_011884.1_1393706_1394300_+	pfam14218, COP23, Circadian oscillating protein COP23	NA|196aa|up_1|NC_011884.1_1394470_1395058_+	pfam14218, COP23, Circadian oscillating protein COP23	NA|286aa|up_0|NC_011884.1_1395060_1395918_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|511aa|down_0|NC_011884.1_1398449_1399982_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|489aa|down_1|NC_011884.1_1400062_1401529_+	TIGR00992, chloroplast_import-associated_channel_homolog, chloroplast envelope protein translocase, IAP75 family	NA|93aa|down_2|NC_011884.1_1401534_1401813_-	pfam02700, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase	NA|70aa|down_3|NC_011884.1_1401978_1402188_+	NA	NA|264aa|down_4|NC_011884.1_1402546_1403338_+	cd09174, PLDc_Nuc_like_unchar2, Putative catalytic domain of uncharacterized hypothetical proteins closely related to Nuc, , an endonuclease from Salmonella typhimurium	NA|120aa|down_5|NC_011884.1_1403853_1404213_+	NA	NA|454aa|down_6|NC_011884.1_1404246_1405608_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|438aa|down_7|NC_011884.1_1405717_1407031_-	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain	NA|511aa|down_8|NC_011884.1_1407647_1409180_+	cd01948, EAL, EAL domain	NA|180aa|down_9|NC_011884.1_1409273_1409813_-	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	6	1585061-1585254	6	CRISPRCasFinder	no		csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Orphan	GTCAATATGGCGGGTTTACGTCC	23	0	0	NA	NA	NA	3	3	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|69aa|up_1|NC_011884.1_1583740_1583947_-,NA|70aa|down_7|NC_011884.1_1591187_1591397_+	NA|184aa|up_9|NC_011884.1_1575758_1576310_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|257aa|up_8|NC_011884.1_1576269_1577040_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|345aa|up_7|NC_011884.1_1577054_1578089_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|152aa|up_6|NC_011884.1_1578578_1579034_-	cd12208, septicolysin_like, putative septicolysin, cholesterol-dependent cytolysin family and related proteins	NA|557aa|up_5|NC_011884.1_1579199_1580870_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|284aa|up_4|NC_011884.1_1581097_1581949_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|236aa|up_3|NC_011884.1_1582036_1582744_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|307aa|up_2|NC_011884.1_1582766_1583687_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|69aa|up_1|NC_011884.1_1583740_1583947_-	NA	NA|82aa|up_0|NC_011884.1_1584146_1584392_-	CHL00065, psaC, photosystem I subunit VII	NA|257aa|down_0|NC_011884.1_1585440_1586211_-	pfam02254, TrkA_N, TrkA-N domain	NA|351aa|down_1|NC_011884.1_1586214_1587267_-	pfam02254, TrkA_N, TrkA-N domain	NA|127aa|down_2|NC_011884.1_1587500_1587881_-	pfam00072, Response_reg, Response regulator receiver domain	NA|401aa|down_3|NC_011884.1_1587873_1589076_-	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|198aa|down_4|NC_011884.1_1589326_1589920_-	pfam12263, DUF3611, Protein of unknown function (DUF3611)	NA|148aa|down_5|NC_011884.1_1589959_1590403_-	COG3411, COG3411, Ferredoxin [Energy production and conversion]	NA|168aa|down_6|NC_011884.1_1590405_1590909_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|70aa|down_7|NC_011884.1_1591187_1591397_+	NA	NA|453aa|down_8|NC_011884.1_1591429_1592788_-	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|807aa|down_9|NC_011884.1_1592942_1595363_+	TIGR02470, Sucrose_synthase_1, sucrose synthase
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	7	1954316-1954545	7	CRISPRCasFinder	no	csa3	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Type I-A	AAAGCTCTTGCAACTGGGTGAGG	23	0	0	NA	NA	NA	3	3	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|47aa|up_6|NC_011884.1_1946911_1947052_-,NA|156aa|up_2|NC_011884.1_1951167_1951635_-,NA|193aa|up_1|NC_011884.1_1951664_1952243_+,NA|146aa|down_7|NC_011884.1_1961994_1962432_+	NA|1113aa|up_9|NC_011884.1_1941821_1945160_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|226aa|up_8|NC_011884.1_1945172_1945850_+	COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|360aa|up_7|NC_011884.1_1945811_1946891_-	PRK12299, obgE, GTPase CgtA; Reviewed	NA|47aa|up_6|NC_011884.1_1946911_1947052_-	NA	NA|737aa|up_5|NC_011884.1_1947362_1949573_+	TIGR02094, Glycogen_phosphorylase, alpha-glucan phosphorylases	NA|221aa|up_4|NC_011884.1_1949601_1950264_-	pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday junction resolvase	NA|267aa|up_3|NC_011884.1_1950393_1951194_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|156aa|up_2|NC_011884.1_1951167_1951635_-	NA	NA|193aa|up_1|NC_011884.1_1951664_1952243_+	NA	NA|297aa|up_0|NC_011884.1_1952300_1953191_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|493aa|down_0|NC_011884.1_1954813_1956292_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|73aa|down_1|NC_011884.1_1956345_1956564_-	sd00031, LRR_1, leucine-rich repeats	NA|160aa|down_2|NC_011884.1_1956541_1957021_-	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|83aa|down_3|NC_011884.1_1958241_1958490_-	COG2886, COG2886, Uncharacterized small protein [Function unknown]	NA|134aa|down_4|NC_011884.1_1958743_1959145_-	sd00031, LRR_1, leucine-rich repeats	NA|509aa|down_5|NC_011884.1_1959154_1960681_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|263aa|down_6|NC_011884.1_1960854_1961643_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|146aa|down_7|NC_011884.1_1961994_1962432_+	NA	NA|237aa|down_8|NC_011884.1_1962450_1963161_-	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|265aa|down_9|NC_011884.1_1963355_1964150_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	8	2040733-2040899	1	PILER-CR	no		csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Orphan	CCACTCGCACTCCAGGA	17	0	0	NA	NA	NA	3	3	Orphan	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|225aa|up_0|NC_011884.1_2039611_2040286_-,NA	NA|814aa|up_9|NC_011884.1_2026386_2028828_+	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily	NA|597aa|up_8|NC_011884.1_2028800_2030591_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|648aa|up_7|NC_011884.1_2030587_2032531_-	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]	NA|433aa|up_6|NC_011884.1_2032793_2034092_+	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|374aa|up_5|NC_011884.1_2034174_2035296_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|267aa|up_4|NC_011884.1_2035867_2036668_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|402aa|up_3|NC_011884.1_2036768_2037974_+	TIGR04261, putative_arylsulfatase_regulatory_protein, radical SAM/SPASM domain protein, GRRM system	NA|303aa|up_2|NC_011884.1_2037995_2038904_+	TIGR04262, possible_ABC_transporter_solute_binding_protein, extracellular substrate-binding orphan protein, GRRM family	NA|164aa|up_1|NC_011884.1_2038960_2039452_+	TIGR04260, hypothetical_protein, rSAM-associated Gly-rich repeat protein	NA|225aa|up_0|NC_011884.1_2039611_2040286_-	NA	NA|232aa|down_0|NC_011884.1_2041041_2041737_-	pfam09865, DUF2092, Predicted periplasmic protein (DUF2092)	NA|254aa|down_1|NC_011884.1_2042234_2042996_-	COG5031, COQ4, Uncharacterized protein involved in ubiquinone biosynthesis [Coenzyme metabolism]	NA|339aa|down_2|NC_011884.1_2043427_2044444_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|246aa|down_3|NC_011884.1_2044505_2045243_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|571aa|down_4|NC_011884.1_2045274_2046987_-	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]	NA|351aa|down_5|NC_011884.1_2047391_2048444_-	COG5592, COG5592, Uncharacterized conserved protein [Function unknown]	NA|362aa|down_6|NC_011884.1_2048630_2049716_+	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate	NA|432aa|down_7|NC_011884.1_2049815_2051111_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|197aa|down_8|NC_011884.1_2051103_2051694_+	pfam13707, RloB, RloB-like protein	NA|946aa|down_9|NC_011884.1_2051722_2054560_-	PRK13560, PRK13560, hypothetical protein; Provisional
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	9	2421822-2425592	2,8,1	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Type I-D	GTTTCCAAGCCTGAATCCCGGTCTACGGGACTGAAAC,GTTTCCAAGCCTGAATCCCGGTCTACGGGACTGAAAC,GTTTCCAAGCCTGAATCCCGGTCTACGGGACTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	50,51,51	51	TypeI-D	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA,NA|272aa|down_2|NC_011884.1_2427842_2428658_+,NA|74aa|down_4|NC_011884.1_2432326_2432548_+,NA|59aa|down_7|NC_011884.1_2434965_2435142_+,NA|167aa|down_8|NC_011884.1_2435323_2435824_+,NA|49aa|down_9|NC_011884.1_2435914_2436061_+	NA|1133aa|up_9|NC_011884.1_2407434_2410833_+	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	WYL|326aa|up_8|NC_011884.1_2411027_2412005_-	pfam13280, WYL, WYL domain	cas3|708aa|up_7|NC_011884.1_2412046_2414170_+	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain	cas10d|989aa|up_6|NC_011884.1_2414179_2417146_+	cd09712, Cas10d_I-D, CRISPR/Cas system-associated protein Cas10d	csc2gr7|335aa|up_5|NC_011884.1_2417142_2418147_+	pfam18320, Csc2, Csc2 Crispr	csc1gr5|262aa|up_4|NC_011884.1_2418158_2418944_+	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1	cas6|273aa|up_3|NC_011884.1_2418912_2419731_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas4|197aa|up_2|NC_011884.1_2419743_2420334_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|326aa|up_1|NC_011884.1_2420333_2421311_+	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO	cas2|98aa|up_0|NC_011884.1_2421307_2421601_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|84aa|down_0|NC_011884.1_2426877_2427129_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|96aa|down_1|NC_011884.1_2427149_2427437_-	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|272aa|down_2|NC_011884.1_2427842_2428658_+	NA	NA|630aa|down_3|NC_011884.1_2429973_2431863_-	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains	NA|74aa|down_4|NC_011884.1_2432326_2432548_+	NA	NA|339aa|down_5|NC_011884.1_2433016_2434033_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|173aa|down_6|NC_011884.1_2434375_2434894_+	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative	NA|59aa|down_7|NC_011884.1_2434965_2435142_+	NA	NA|167aa|down_8|NC_011884.1_2435323_2435824_+	NA	NA|49aa|down_9|NC_011884.1_2435914_2436061_+	NA
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	10	4118395-4123555	9,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Type I-E	CGGCTCACCCCCACAGGTATGGGGACAAC,CGGCTCACCCCCACAGGTATGGGGACAAC,GGCTCACCCCCACAGGTATGGGGACAAC	29,29,28	3	3	4122322-4122354|4122632-4122663|4122632-4122664	NC_011884.1_2831355-2831387|NC_011884.1_2180044-2180013|NC_011884.1_2180044-2180012	NA:NA:NA	83,83,46	83	TypeI-E	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|136aa|up_1|NC_011884.1_4117459_4117867_+,NA|83aa|up_0|NC_011884.1_4117895_4118144_+,NA	NA|144aa|up_9|NC_011884.1_4109484_4109916_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|212aa|up_8|NC_011884.1_4110036_4110672_+	pfam14159, CAAD, CAAD domains of cyanobacterial aminoacyl-tRNA synthetase	NA|316aa|up_7|NC_011884.1_4110707_4111655_-	pfam14062, DUF4253, Domain of unknown function (DUF4253)	NA|122aa|up_6|NC_011884.1_4111905_4112271_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|276aa|up_5|NC_011884.1_4112276_4113104_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|280aa|up_4|NC_011884.1_4113112_4113952_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|418aa|up_3|NC_011884.1_4114021_4115275_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|411aa|up_2|NC_011884.1_4116091_4117324_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|136aa|up_1|NC_011884.1_4117459_4117867_+	NA	NA|83aa|up_0|NC_011884.1_4117895_4118144_+	NA	cas2|91aa|down_0|NC_011884.1_4123574_4123847_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|304aa|down_1|NC_011884.1_4123851_4124763_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|207aa|down_2|NC_011884.1_4124787_4125408_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|217aa|down_3|NC_011884.1_4125389_4126040_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|516aa|down_4|NC_011884.1_4126042_4127590_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|191aa|down_5|NC_011884.1_4127595_4128168_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|519aa|down_6|NC_011884.1_4128179_4129736_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|71aa|down_7|NC_011884.1_4129799_4130012_+	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system	cas3|888aa|down_8|NC_011884.1_4130008_4132672_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|335aa|down_9|NC_011884.1_4132671_4133676_-	pfam13280, WYL, WYL domain
GCF_000022045.1_ASM2204v1	NC_011884	Cyanothece sp. PCC 7425, complete genome	11	4142726-4143823	3,4	CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS	Type I-E	GCAGGCGTATTCGGATTTCCTGCTACTGCT,AGCCAGCTGTTCCAGTAGGGAAGCAGGCGCATTCGGATTTCTTGCTACTGAAGAACGAACT	30,61	0	0	NA	NA	NA:NA	13,2	13	TypeI-E	csa3,DinG,PD-DExK,RT,DEDDh,WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,c2c9_V-U4,c2c5_V-U5,cas14j,Cas14c_CAS-V-F,cas6e,cas5,cas7,cse2gr11,cas8e,2OG_CAS,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csx1,csx18,csx21,csm3gr7,csx19	NA|63aa|up_8|NC_011884.1_4134188_4134377_-,NA|30aa|up_4|NC_011884.1_4137947_4138037_+,NA|47aa|down_4|NC_011884.1_4148816_4148957_+,NA|144aa|down_7|NC_011884.1_4153064_4153496_+,NA|585aa|down_8|NC_011884.1_4153486_4155241_-,NA|62aa|down_9|NC_011884.1_4155267_4155453_+	WYL|335aa|up_9|NC_011884.1_4132671_4133676_-	pfam13280, WYL, WYL domain	NA|63aa|up_8|NC_011884.1_4134188_4134377_-	NA	NA|546aa|up_7|NC_011884.1_4134939_4136577_+	CHL00195, ycf46, Ycf46; Provisional	NA|136aa|up_6|NC_011884.1_4136644_4137052_+	pfam06868, DUF1257, Protein of unknown function (DUF1257)	NA|276aa|up_5|NC_011884.1_4137067_4137895_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|30aa|up_4|NC_011884.1_4137947_4138037_+	NA	NA|359aa|up_3|NC_011884.1_4138174_4139251_-	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	NA|521aa|up_2|NC_011884.1_4139303_4140866_-	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family	NA|212aa|up_1|NC_011884.1_4140862_4141498_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|72aa|up_0|NC_011884.1_4141618_4141834_-	pfam11211, DUF2997, Protein of unknown function (DUF2997)	NA|218aa|down_0|NC_011884.1_4144314_4144968_-	cd16383, GUN4, porphyrin-binding protein domain GUN4	NA|311aa|down_1|NC_011884.1_4145158_4146091_+	pfam03389, MobA_MobL, MobA/MobL family	NA|418aa|down_2|NC_011884.1_4146164_4147418_-	pfam11300, DUF3102, Protein of unknown function (DUF3102)	NA|206aa|down_3|NC_011884.1_4147550_4148168_-	cd10437, GIY-YIG_HE_I-TevI_like, N-terminal catalytic domain of GIY-YIG intron endonuclease I-TevI, I-BmoI, I-BanI, I-BthII and similar proteins	NA|47aa|down_4|NC_011884.1_4148816_4148957_+	NA	NA|828aa|down_5|NC_011884.1_4149022_4151506_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|282aa|down_6|NC_011884.1_4151886_4152732_+	pfam13392, HNH_3, HNH endonuclease	NA|144aa|down_7|NC_011884.1_4153064_4153496_+	NA	NA|585aa|down_8|NC_011884.1_4153486_4155241_-	NA	NA|62aa|down_9|NC_011884.1_4155267_4155453_+	NA
