assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	1	544374-544487	1	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	ATCAGGCCACCCCCACCTATTGCGGCGACTACGCTAT	37	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|308aa|up_0|NC_011831.1_542100_543024_+,NA|189aa|down_8|NC_011831.1_555023_555590_-	NA|405aa|up_9|NC_011831.1_529701_530916_+	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family	NA|329aa|up_8|NC_011831.1_530990_531977_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|342aa|up_7|NC_011831.1_532018_533044_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|499aa|up_6|NC_011831.1_533055_534552_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|414aa|up_5|NC_011831.1_534651_535893_-	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria	NA|505aa|up_4|NC_011831.1_536723_538238_+	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional	NA|393aa|up_3|NC_011831.1_538219_539398_-	PRK00064, recF, recombination protein F; Reviewed	NA|347aa|up_2|NC_011831.1_539418_540459_-	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|456aa|up_1|NC_011831.1_540621_541989_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|308aa|up_0|NC_011831.1_542100_543024_+	NA	NA|393aa|down_0|NC_011831.1_545068_546247_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|271aa|down_1|NC_011831.1_546371_547184_-	cd16443, LplA, lipoate-protein ligase	NA|374aa|down_2|NC_011831.1_547180_548302_-	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|827aa|down_3|NC_011831.1_548298_550779_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|306aa|down_4|NC_011831.1_550804_551722_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|211aa|down_5|NC_011831.1_552030_552663_-	cd07403, MPP_TTHA0053, Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain	NA|491aa|down_6|NC_011831.1_552738_554211_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|158aa|down_7|NC_011831.1_554497_554971_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|189aa|down_8|NC_011831.1_555023_555590_-	NA	NA|123aa|down_9|NC_011831.1_555918_556287_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	2	688004-688483	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas2,cas1,cas6,cas3,cas5,cas7	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Unclear	GTTTCAGTGCTCTACCGTGAGCCGAAAGTATTGAAAG,GTTTCAGTGCTCTACCGTGAGCCGAAAGTATTGAAAC,GTTTCAGTGCTCTACCGTGAGCCGAAAGTATTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	6,6,5	6	Unclear	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|383aa|up_7|NC_011831.1_678381_679530_+,NA|516aa|up_0|NC_011831.1_686398_687946_-,NA	NA|700aa|up_9|NC_011831.1_673431_675531_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|157aa|up_8|NC_011831.1_675583_676054_-	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|383aa|up_7|NC_011831.1_678381_679530_+	NA	NA|308aa|up_6|NC_011831.1_679559_680483_+	cd07337, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|494aa|up_5|NC_011831.1_680444_681926_-	pfam04411, PDDEXK_7, PD-(D/E)XK nuclease superfamily	NA|322aa|up_4|NC_011831.1_681919_682885_-	cd12822, TmCorA-like, Thermotoga maritima CorA-like family	NA|202aa|up_3|NC_011831.1_682886_683492_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|448aa|up_2|NC_011831.1_683546_684890_-	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|258aa|up_1|NC_011831.1_684965_685739_-	cd01643, Bacterial_IMPase_like_2, Bacterial family of Mg++ dependent phosphatases, related to inositol monophosphatases	NA|516aa|up_0|NC_011831.1_686398_687946_-	NA	cas4|203aa|down_0|NC_011831.1_700946_701555_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|86aa|down_1|NC_011831.1_701541_701799_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_2|NC_011831.1_701814_702828_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas6|326aa|down_3|NC_011831.1_703038_704016_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas3|782aa|down_4|NC_011831.1_704018_706364_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|250aa|down_5|NC_011831.1_706329_707079_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|364aa|down_6|NC_011831.1_707352_708444_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|501aa|down_7|NC_011831.1_708643_710146_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	WYL|318aa|down_8|NC_011831.1_710486_711440_-	pfam13280, WYL, WYL domain	NA|77aa|down_9|NC_011831.1_711510_711741_-	pfam08279, HTH_11, HTH domain
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	3	689334-700642	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,WYL	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Unclear	GTTTCAGTGCTCTACCGTGAGCCGAAAGTATTGAAAG,GTTTCAGTGCTCTACCGTGAGCCGAAAGTATTGAAAG,GTTTCAGTGCTCTACCGTGAGCCGAAAGTATTGAAAG	37,37,37	0	0	NA	NA	NA:NA:NA	153,153,151	153	Unclear	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|383aa|up_7|NC_011831.1_678381_679530_+,NA|516aa|up_0|NC_011831.1_686398_687946_-,NA	NA|700aa|up_9|NC_011831.1_673431_675531_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|157aa|up_8|NC_011831.1_675583_676054_-	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|383aa|up_7|NC_011831.1_678381_679530_+	NA	NA|308aa|up_6|NC_011831.1_679559_680483_+	cd07337, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|494aa|up_5|NC_011831.1_680444_681926_-	pfam04411, PDDEXK_7, PD-(D/E)XK nuclease superfamily	NA|322aa|up_4|NC_011831.1_681919_682885_-	cd12822, TmCorA-like, Thermotoga maritima CorA-like family	NA|202aa|up_3|NC_011831.1_682886_683492_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|448aa|up_2|NC_011831.1_683546_684890_-	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|258aa|up_1|NC_011831.1_684965_685739_-	cd01643, Bacterial_IMPase_like_2, Bacterial family of Mg++ dependent phosphatases, related to inositol monophosphatases	NA|516aa|up_0|NC_011831.1_686398_687946_-	NA	cas4|203aa|down_0|NC_011831.1_700946_701555_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|86aa|down_1|NC_011831.1_701541_701799_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_2|NC_011831.1_701814_702828_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas6|326aa|down_3|NC_011831.1_703038_704016_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas3|782aa|down_4|NC_011831.1_704018_706364_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|250aa|down_5|NC_011831.1_706329_707079_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|364aa|down_6|NC_011831.1_707352_708444_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|501aa|down_7|NC_011831.1_708643_710146_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	WYL|318aa|down_8|NC_011831.1_710486_711440_-	pfam13280, WYL, WYL domain	NA|77aa|down_9|NC_011831.1_711510_711741_-	pfam08279, HTH_11, HTH domain
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	4	898104-898372	3	PILER-CR	no	c2c9_V-U4	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Type V-U4	CTGGCCACCGCCCTCGCCCACGCCGGGCA	29	2	11	898253-898288|898253-898288|898253-898288|898253-898288|898253-898288|898253-898288|898253-898288|898253-898288|898318-898364|898318-898364|898318-898364	NC_011831.1_898013-898048|NC_011831.1_899165-899200|NC_011831.1_899285-899320|NC_011831.1_899603-899638|NC_011831.1_899822-899857|NC_011831.1_899942-899977|NC_011831.1_900062-900097|NC_011831.1_900182-900217|NC_011831.1_899428-899474|NC_011831.1_899746-899792|NC_011831.1_899866-899912	NA	3	3	TypeV-U4	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|150aa|up_0|NC_011831.1_894415_894865_+,NA	NA|405aa|up_9|NC_011831.1_877243_878458_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|242aa|up_8|NC_011831.1_878493_879219_+	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|261aa|up_7|NC_011831.1_879242_880025_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|75aa|up_6|NC_011831.1_880765_880990_-	pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat	NA|335aa|up_5|NC_011831.1_881292_882297_+	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|1727aa|up_4|NC_011831.1_882384_887565_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_3|NC_011831.1_887569_888193_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|535aa|up_2|NC_011831.1_888189_889794_+	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins	NA|1067aa|up_1|NC_011831.1_890091_893292_+	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|150aa|up_0|NC_011831.1_894415_894865_+	NA	NA|254aa|down_0|NC_011831.1_900497_901259_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|420aa|down_1|NC_011831.1_901445_902705_-	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|128aa|down_2|NC_011831.1_902911_903295_-	cd20301, cupin_ChrR, anti-ECFsigma factor, ChrR , cupin domain	NA|351aa|down_3|NC_011831.1_904452_905505_-	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|280aa|down_4|NC_011831.1_905514_906354_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|314aa|down_5|NC_011831.1_906366_907308_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|443aa|down_6|NC_011831.1_907389_908718_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|157aa|down_7|NC_011831.1_909226_909697_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|413aa|down_8|NC_011831.1_909693_910932_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|532aa|down_9|NC_011831.1_910938_912534_-	PHA03247, PHA03247, large tegument protein UL36; Provisional
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	5	1096120-1096212	4	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	TCAAGCCATCGCCGTCGGTATCG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|735aa|down_2|NC_011831.1_1101892_1104097_-,NA|796aa|down_5|NC_011831.1_1106858_1109246_-,NA|107aa|down_7|NC_011831.1_1112536_1112857_-	NA|204aa|up_9|NC_011831.1_1074444_1075056_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|311aa|up_8|NC_011831.1_1075101_1076034_-	pfam11927, DUF3445, Protein of unknown function (DUF3445)	NA|317aa|up_7|NC_011831.1_1076026_1076977_-	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|273aa|up_6|NC_011831.1_1076986_1077805_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|351aa|up_5|NC_011831.1_1077808_1078861_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|480aa|up_4|NC_011831.1_1079229_1080669_+	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|283aa|up_3|NC_011831.1_1080661_1081510_+	pfam13650, Asp_protease_2, Aspartyl protease	NA|566aa|up_2|NC_011831.1_1081757_1083455_+	pfam01752, Peptidase_M9, Collagenase	NA|125aa|up_1|NC_011831.1_1083488_1083863_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|300aa|up_0|NC_011831.1_1083977_1084877_-	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2	NA|403aa|down_0|NC_011831.1_1099504_1100713_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|377aa|down_1|NC_011831.1_1100758_1101889_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|735aa|down_2|NC_011831.1_1101892_1104097_-	NA	NA|552aa|down_3|NC_011831.1_1104162_1105818_-	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|283aa|down_4|NC_011831.1_1105814_1106663_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|796aa|down_5|NC_011831.1_1106858_1109246_-	NA	NA|1055aa|down_6|NC_011831.1_1109351_1112516_+	COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]	NA|107aa|down_7|NC_011831.1_1112536_1112857_-	NA	NA|282aa|down_8|NC_011831.1_1113991_1114837_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|440aa|down_9|NC_011831.1_1115690_1117010_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	6	1096279-1096367	5	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	TCAAGCCATCGCCGTCGGTATCG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|735aa|down_2|NC_011831.1_1101892_1104097_-,NA|796aa|down_5|NC_011831.1_1106858_1109246_-,NA|107aa|down_7|NC_011831.1_1112536_1112857_-	NA|204aa|up_9|NC_011831.1_1074444_1075056_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|311aa|up_8|NC_011831.1_1075101_1076034_-	pfam11927, DUF3445, Protein of unknown function (DUF3445)	NA|317aa|up_7|NC_011831.1_1076026_1076977_-	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|273aa|up_6|NC_011831.1_1076986_1077805_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|351aa|up_5|NC_011831.1_1077808_1078861_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|480aa|up_4|NC_011831.1_1079229_1080669_+	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|283aa|up_3|NC_011831.1_1080661_1081510_+	pfam13650, Asp_protease_2, Aspartyl protease	NA|566aa|up_2|NC_011831.1_1081757_1083455_+	pfam01752, Peptidase_M9, Collagenase	NA|125aa|up_1|NC_011831.1_1083488_1083863_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|300aa|up_0|NC_011831.1_1083977_1084877_-	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2	NA|403aa|down_0|NC_011831.1_1099504_1100713_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|377aa|down_1|NC_011831.1_1100758_1101889_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|735aa|down_2|NC_011831.1_1101892_1104097_-	NA	NA|552aa|down_3|NC_011831.1_1104162_1105818_-	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|283aa|down_4|NC_011831.1_1105814_1106663_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|796aa|down_5|NC_011831.1_1106858_1109246_-	NA	NA|1055aa|down_6|NC_011831.1_1109351_1112516_+	COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]	NA|107aa|down_7|NC_011831.1_1112536_1112857_-	NA	NA|282aa|down_8|NC_011831.1_1113991_1114837_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|440aa|down_9|NC_011831.1_1115690_1117010_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	7	1241044-1241129	6	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	TCTCCCACTGGTGCGGGAGAGGGGC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|379aa|up_8|NC_011831.1_1226260_1227397_-,NA	NA|391aa|up_9|NC_011831.1_1224974_1226147_-	pfam00072, Response_reg, Response regulator receiver domain	NA|379aa|up_8|NC_011831.1_1226260_1227397_-	NA	NA|375aa|up_7|NC_011831.1_1227479_1228604_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|302aa|up_6|NC_011831.1_1228756_1229662_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|389aa|up_5|NC_011831.1_1229648_1230815_-	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|132aa|up_4|NC_011831.1_1230814_1231210_-	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|120aa|up_3|NC_011831.1_1231274_1231634_-	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|528aa|up_2|NC_011831.1_1231661_1233245_-	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit	NA|915aa|up_1|NC_011831.1_1234748_1237493_+	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298)	NA|910aa|up_0|NC_011831.1_1237512_1240242_+	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298)	NA|313aa|down_0|NC_011831.1_1244184_1245123_+	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|608aa|down_1|NC_011831.1_1247026_1248850_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|303aa|down_2|NC_011831.1_1248876_1249785_+	pfam13616, Rotamase_3, PPIC-type PPIASE domain	NA|409aa|down_3|NC_011831.1_1249781_1251008_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|64aa|down_4|NC_011831.1_1250991_1251183_+	pfam06107, DUF951, Bacterial protein of unknown function (DUF951)	NA|460aa|down_5|NC_011831.1_1251291_1252671_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|266aa|down_6|NC_011831.1_1252742_1253540_+	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|298aa|down_7|NC_011831.1_1253636_1254530_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|483aa|down_8|NC_011831.1_1254658_1256107_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|354aa|down_9|NC_011831.1_1256290_1257352_+	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	8	1280081-1281612	3	CRT	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GTNGCCGTCGGCGTGGCCGT	20	0	0	NA	NA	NA	19	19	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|63aa|up_6|NC_011831.1_1273514_1273703_+,NA|118aa|up_0|NC_011831.1_1279402_1279756_+,NA	NA|262aa|up_9|NC_011831.1_1270290_1271076_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|363aa|up_8|NC_011831.1_1271265_1272354_+	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|380aa|up_7|NC_011831.1_1272371_1273511_+	pfam01170, UPF0020, Putative RNA methylase family UPF0020	NA|63aa|up_6|NC_011831.1_1273514_1273703_+	NA	NA|154aa|up_5|NC_011831.1_1273760_1274222_-	pfam02130, UPF0054, Uncharacterized protein family UPF0054	NA|152aa|up_4|NC_011831.1_1274218_1274674_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|184aa|up_3|NC_011831.1_1274684_1275236_-	cd00412, pyrophosphatase, Inorganic pyrophosphatase	NA|571aa|up_2|NC_011831.1_1275434_1277147_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|262aa|up_1|NC_011831.1_1278505_1279291_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|118aa|up_0|NC_011831.1_1279402_1279756_+	NA	NA|490aa|down_0|NC_011831.1_1283323_1284793_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|526aa|down_1|NC_011831.1_1284909_1286487_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|643aa|down_2|NC_011831.1_1286622_1288551_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|101aa|down_3|NC_011831.1_1288557_1288860_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|169aa|down_4|NC_011831.1_1288859_1289366_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|166aa|down_5|NC_011831.1_1289456_1289954_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|408aa|down_6|NC_011831.1_1290019_1291243_-	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH	NA|904aa|down_7|NC_011831.1_1291256_1293968_-	TIGR01973, NADH-quinone_oxidoreductase_subunit_G, NADH-quinone oxidoreductase, chain G	NA|438aa|down_8|NC_011831.1_1294124_1295438_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|231aa|down_9|NC_011831.1_1295464_1296157_-	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	9	1312592-1312687	7	CRISPRCasFinder	no	csx1,csm3gr7,csx19,csx10gr5,cas10,csx3	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Type III-C,Type III-B, Type III-D?,Type III-A,Type III-D	GCAGCGATCTCCCGCGAGCGTCGAAGGGCG	30	0	0	NA	NA	NA	1	1	TypeIII-C,TypeIII-B,TypeIII-D?,TypeIII-A,TypeIII-D	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,csx19|197aa|down_4|NC_011831.1_1319824_1320415_-	NA|601aa|up_9|NC_011831.1_1299519_1301322_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|127aa|up_8|NC_011831.1_1301445_1301826_-	TIGR04256, conserved_hypothetical_protein, GxxExxY protein	NA|399aa|up_7|NC_011831.1_1302031_1303228_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|319aa|up_6|NC_011831.1_1303282_1304239_-	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase	NA|190aa|up_5|NC_011831.1_1304594_1305164_+	PRK00529, PRK00529, elongation factor P; Validated	NA|546aa|up_4|NC_011831.1_1306167_1307805_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|98aa|up_3|NC_011831.1_1307810_1308104_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|177aa|up_2|NC_011831.1_1308158_1308689_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|421aa|up_1|NC_011831.1_1309213_1310476_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|214aa|up_0|NC_011831.1_1310497_1311139_-	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|194aa|down_0|NC_011831.1_1312946_1313528_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	csx1|413aa|down_1|NC_011831.1_1313595_1314834_-	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csm3gr7|699aa|down_2|NC_011831.1_1314842_1316939_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csm3gr7|699aa|down_3|NC_011831.1_1317731_1319828_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx19|197aa|down_4|NC_011831.1_1319824_1320415_-	NA	csm3gr7|598aa|down_5|NC_011831.1_1320411_1322205_-	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csx10gr5|779aa|down_6|NC_011831.1_1322208_1324545_-	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	cas10|543aa|down_7|NC_011831.1_1324541_1326170_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csx1|578aa|down_8|NC_011831.1_1326188_1327922_-	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	csx1|289aa|down_9|NC_011831.1_1328075_1328942_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	10	1352342-1352455	8	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GTAGCATATGACGCAGAAGTCGGCAAGGCTCAAGCGCTG	39	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|196aa|up_3|NC_011831.1_1349402_1349990_+,NA|171aa|down_3|NC_011831.1_1358781_1359294_-,NA|114aa|down_7|NC_011831.1_1362567_1362909_-	NA|227aa|up_9|NC_011831.1_1341773_1342454_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|254aa|up_8|NC_011831.1_1342550_1343312_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|119aa|up_7|NC_011831.1_1343511_1343868_+	pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase	NA|455aa|up_6|NC_011831.1_1344670_1346035_+	pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone oxidoreductase chain 6	NA|180aa|up_5|NC_011831.1_1346044_1346584_+	pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup	NA|931aa|up_4|NC_011831.1_1346597_1349390_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|196aa|up_3|NC_011831.1_1349402_1349990_+	NA	NA|137aa|up_2|NC_011831.1_1349999_1350410_+	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|75aa|up_1|NC_011831.1_1351109_1351334_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|64aa|up_0|NC_011831.1_1351794_1351986_+	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|333aa|down_0|NC_011831.1_1354607_1355606_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|379aa|down_1|NC_011831.1_1356608_1357745_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|252aa|down_2|NC_011831.1_1357897_1358653_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|171aa|down_3|NC_011831.1_1358781_1359294_-	NA	NA|515aa|down_4|NC_011831.1_1359319_1360864_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|241aa|down_5|NC_011831.1_1360854_1361577_-	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein	NA|308aa|down_6|NC_011831.1_1361640_1362564_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|114aa|down_7|NC_011831.1_1362567_1362909_-	NA	NA|283aa|down_8|NC_011831.1_1362905_1363754_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|219aa|down_9|NC_011831.1_1363934_1364591_-	PRK08317, PRK08317, hypothetical protein; Provisional
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	11	1558382-1558496	9	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GGCGCGAAGGGCGCGAAGATAAGCAACGTTTTTTGAG	37	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA	NA|465aa|up_9|NC_011831.1_1546136_1547531_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|374aa|up_8|NC_011831.1_1547566_1548688_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|492aa|up_7|NC_011831.1_1548676_1550152_-	PRK00784, PRK00784, cobyric acid synthase	NA|366aa|up_6|NC_011831.1_1550188_1551286_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|185aa|up_5|NC_011831.1_1551264_1551819_-	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase	NA|464aa|up_4|NC_011831.1_1551917_1553309_-	PRK01077, PRK01077, cobyrinate a,c-diamide synthase	NA|261aa|up_3|NC_011831.1_1553308_1554091_-	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|779aa|up_2|NC_011831.1_1554415_1556752_-	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH)	NA|268aa|up_1|NC_011831.1_1556800_1557604_-	cd11641, Precorrin-4_C11-MT, Precorrin-4 C11-methyltransferase (CbiF/CobM)	NA|241aa|up_0|NC_011831.1_1557600_1558323_-	cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase, also named CobI or CbiL	NA|402aa|down_0|NC_011831.1_1558582_1559788_-	cd11644, Precorrin-6Y-MT, Precorrin-6Y methyltransferase (also named CbiE)	NA|412aa|down_1|NC_011831.1_1559784_1561020_-	PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed	NA|220aa|down_2|NC_011831.1_1561183_1561843_-	pfam02570, CbiC, Precorrin-8X methylmutase	NA|175aa|down_3|NC_011831.1_1561839_1562364_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|466aa|down_4|NC_011831.1_1562360_1563758_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|314aa|down_5|NC_011831.1_1563754_1564696_-	pfam03186, CobD_Cbib, CobD/Cbib protein	NA|248aa|down_6|NC_011831.1_1564831_1565575_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|258aa|down_7|NC_011831.1_1565571_1566345_-	PRK15485, PRK15485, energy-coupling factor ABC transporter transmembrane protein	NA|100aa|down_8|NC_011831.1_1566348_1566648_-	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein	NA|247aa|down_9|NC_011831.1_1566644_1567385_-	PRK08319, PRK08319, energy-coupling factor ABC transporter permease
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	12	1621275-1621387	10	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	ATACCTGCGGTATACGGATACGACTGAGACTTTGCAAT	38	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|183aa|up_8|NC_011831.1_1603526_1604075_+,NA|386aa|up_1|NC_011831.1_1617689_1618847_-,NA|129aa|up_0|NC_011831.1_1618882_1619269_-,NA|48aa|down_2|NC_011831.1_1628523_1628667_+,NA|48aa|down_3|NC_011831.1_1628767_1628911_+,NA|131aa|down_4|NC_011831.1_1628968_1629361_+,NA|427aa|down_7|NC_011831.1_1633366_1634647_+	NA|316aa|up_9|NC_011831.1_1602345_1603293_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|183aa|up_8|NC_011831.1_1603526_1604075_+	NA	NA|440aa|up_7|NC_011831.1_1604652_1605972_-	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|651aa|up_6|NC_011831.1_1606138_1608091_-	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	NA|258aa|up_5|NC_011831.1_1608364_1609138_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|351aa|up_4|NC_011831.1_1609243_1610296_+	pfam09084, NMT1, NMT1/THI5 like	NA|603aa|up_3|NC_011831.1_1610345_1612154_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|912aa|up_2|NC_011831.1_1614917_1617653_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|386aa|up_1|NC_011831.1_1617689_1618847_-	NA	NA|129aa|up_0|NC_011831.1_1618882_1619269_-	NA	NA|764aa|down_0|NC_011831.1_1622554_1624846_-	pfam13809, Tubulin_2, Tubulin like	NA|1018aa|down_1|NC_011831.1_1624892_1627946_-	pfam13519, VWA_2, von Willebrand factor type A domain	NA|48aa|down_2|NC_011831.1_1628523_1628667_+	NA	NA|48aa|down_3|NC_011831.1_1628767_1628911_+	NA	NA|131aa|down_4|NC_011831.1_1628968_1629361_+	NA	NA|398aa|down_5|NC_011831.1_1629757_1630951_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|533aa|down_6|NC_011831.1_1631229_1632828_-	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|427aa|down_7|NC_011831.1_1633366_1634647_+	NA	NA|447aa|down_8|NC_011831.1_1635928_1637269_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|981aa|down_9|NC_011831.1_1637406_1640349_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	13	1698656-1698750	11	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	CTAAAAAGGTGATCACCTGCGTC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|727aa|down_1|NC_011831.1_1700970_1703151_+,NA|218aa|down_4|NC_011831.1_1705001_1705655_+	NA|383aa|up_9|NC_011831.1_1688174_1689323_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|209aa|up_8|NC_011831.1_1689364_1689991_-	PRK14562, PRK14562, haloacid dehalogenase superfamily protein; Provisional	NA|370aa|up_7|NC_011831.1_1690077_1691187_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|214aa|up_6|NC_011831.1_1691450_1692092_-	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|386aa|up_5|NC_011831.1_1692088_1693246_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|235aa|up_4|NC_011831.1_1693223_1693928_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|263aa|up_3|NC_011831.1_1693934_1694723_-	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold	NA|183aa|up_2|NC_011831.1_1694726_1695275_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|678aa|up_1|NC_011831.1_1695571_1697605_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|243aa|up_0|NC_011831.1_1697836_1698565_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|539aa|down_0|NC_011831.1_1699396_1701013_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|727aa|down_1|NC_011831.1_1700970_1703151_+	NA	NA|224aa|down_2|NC_011831.1_1703147_1703819_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|386aa|down_3|NC_011831.1_1703746_1704904_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|218aa|down_4|NC_011831.1_1705001_1705655_+	NA	NA|535aa|down_5|NC_011831.1_1705657_1707262_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|376aa|down_6|NC_011831.1_1707385_1708513_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|187aa|down_7|NC_011831.1_1708531_1709092_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|295aa|down_8|NC_011831.1_1709104_1709989_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|168aa|down_9|NC_011831.1_1710064_1710568_+	cd14498, DSP, dual-specificity phosphatase domain
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	14	2004416-2004659	4	PILER-CR	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GGAACTGCGAACACAACCCCCTGTCATTGCGAGCGCAGCGAGCAAGCTGCCCACCT	56	2	6	2004472-2004527|2004472-2004527|2004472-2004527|2004472-2004527|2004472-2004527|2004584-2004630	NC_011831.1_2003667-2003722|NC_011831.1_2004077-2004132|NC_011831.1_2004284-2004339|NC_011831.1_2003461-2003516|NC_011831.1_2004660-2004715|NC_011831.1_2004369-2004415	NA	2	2	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|122aa|up_7|NC_011831.1_1992916_1993282_-,NA|206aa|up_2|NC_011831.1_1997991_1998609_-,NA	NA|226aa|up_9|NC_011831.1_1991562_1992240_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|174aa|up_8|NC_011831.1_1992239_1992761_-	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|122aa|up_7|NC_011831.1_1992916_1993282_-	NA	NA|477aa|up_6|NC_011831.1_1993395_1994826_-	TIGR03023, Sugar_transferase	NA|301aa|up_5|NC_011831.1_1994836_1995739_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|312aa|up_4|NC_011831.1_1996035_1996971_+	cd09290, Photo-RC_L, Subunit L of bacterial photosynthetic reaction center	NA|305aa|up_3|NC_011831.1_1996987_1997902_+	PRK14504, PRK14504, photosynthetic reaction center subunit M; Provisional	NA|206aa|up_2|NC_011831.1_1997991_1998609_-	NA	NA|633aa|up_1|NC_011831.1_2000549_2002448_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|247aa|up_0|NC_011831.1_2002456_2003197_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|86aa|down_0|NC_011831.1_2004820_2005078_+	COG2936, COG2936, Predicted acyl esterases [General function prediction only]	NA|346aa|down_1|NC_011831.1_2005473_2006511_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|771aa|down_2|NC_011831.1_2006568_2008881_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|318aa|down_3|NC_011831.1_2009963_2010917_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|277aa|down_4|NC_011831.1_2011027_2011858_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|495aa|down_5|NC_011831.1_2011854_2013339_-	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]	NA|440aa|down_6|NC_011831.1_2013335_2014655_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|63aa|down_7|NC_011831.1_2014965_2015154_-	COG1826, TatA, Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]	NA|383aa|down_8|NC_011831.1_2015275_2016424_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|237aa|down_9|NC_011831.1_2016440_2017151_-	TIGR02227, Inactive_signal_peptidase_IA
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	15	2099177-2099287	12	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	AGTTGCGGGCGCACCACCGTATTAAATGCAATCGTCGC	38	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|323aa|up_0|NC_011831.1_2098104_2099073_-,NA	NA|783aa|up_9|NC_011831.1_2085246_2087595_+	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|130aa|up_8|NC_011831.1_2089408_2089798_+	pfam00034, Cytochrom_C, Cytochrome c	NA|821aa|up_7|NC_011831.1_2089819_2092282_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|184aa|up_6|NC_011831.1_2092360_2092912_-	pfam02674, Colicin_V, Colicin V production protein	NA|446aa|up_5|NC_011831.1_2093226_2094564_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|414aa|up_4|NC_011831.1_2094721_2095963_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|230aa|up_3|NC_011831.1_2095966_2096656_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|176aa|up_2|NC_011831.1_2096732_2097260_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|289aa|up_1|NC_011831.1_2097241_2098108_+	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs	NA|323aa|up_0|NC_011831.1_2098104_2099073_-	NA	NA|347aa|down_0|NC_011831.1_2099768_2100809_-	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family	NA|647aa|down_1|NC_011831.1_2100942_2102883_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|633aa|down_2|NC_011831.1_2102927_2104826_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|457aa|down_3|NC_011831.1_2105162_2106533_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|252aa|down_4|NC_011831.1_2106516_2107272_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|345aa|down_5|NC_011831.1_2107280_2108315_-	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain	NA|328aa|down_6|NC_011831.1_2108360_2109344_-	COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]	NA|473aa|down_7|NC_011831.1_2109350_2110769_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|257aa|down_8|NC_011831.1_2110795_2111566_-	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|86aa|down_9|NC_011831.1_2111748_2112006_-	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	16	2208607-2208704	13	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GCAACTCAACCCTCGCCACCACCT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|54aa|up_8|NC_011831.1_2200529_2200691_+,NA|66aa|down_0|NC_011831.1_2210022_2210220_+,NA|114aa|down_7|NC_011831.1_2219792_2220134_-,NA|280aa|down_8|NC_011831.1_2220188_2221028_-,NA|183aa|down_9|NC_011831.1_2221311_2221860_-	NA|474aa|up_9|NC_011831.1_2198787_2200209_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|54aa|up_8|NC_011831.1_2200529_2200691_+	NA	NA|362aa|up_7|NC_011831.1_2200683_2201769_+	COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid metabolism]	NA|358aa|up_6|NC_011831.1_2201892_2202966_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|349aa|up_5|NC_011831.1_2202976_2204023_-	TIGR02376, Copper-containing_nitrite_reductase, nitrite reductase, copper-containing	NA|251aa|up_4|NC_011831.1_2204191_2204944_+	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|225aa|up_3|NC_011831.1_2204960_2205635_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|81aa|up_2|NC_011831.1_2205724_2205967_+	COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]	NA|212aa|up_1|NC_011831.1_2205985_2206621_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|261aa|up_0|NC_011831.1_2206681_2207464_-	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|66aa|down_0|NC_011831.1_2210022_2210220_+	NA	NA|453aa|down_1|NC_011831.1_2211960_2213319_+	COG0732, HsdS, Restriction endonuclease S subunits [Defense mechanisms]	NA|221aa|down_2|NC_011831.1_2213305_2213968_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|983aa|down_3|NC_011831.1_2213964_2216913_+	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|112aa|down_4|NC_011831.1_2216909_2217245_+	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|312aa|down_5|NC_011831.1_2218009_2218945_-	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup	NA|119aa|down_6|NC_011831.1_2219323_2219680_-	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown]	NA|114aa|down_7|NC_011831.1_2219792_2220134_-	NA	NA|280aa|down_8|NC_011831.1_2220188_2221028_-	NA	NA|183aa|down_9|NC_011831.1_2221311_2221860_-	NA
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	17	2210656-2210769	14	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GCGCGAAAACCCGCGCCTTTCTGGCGTGATTGACAT	36	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|66aa|up_0|NC_011831.1_2210022_2210220_+,NA|114aa|down_6|NC_011831.1_2219792_2220134_-,NA|280aa|down_7|NC_011831.1_2220188_2221028_-,NA|183aa|down_8|NC_011831.1_2221311_2221860_-	NA|362aa|up_9|NC_011831.1_2200683_2201769_+	COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid metabolism]	NA|358aa|up_8|NC_011831.1_2201892_2202966_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|349aa|up_7|NC_011831.1_2202976_2204023_-	TIGR02376, Copper-containing_nitrite_reductase, nitrite reductase, copper-containing	NA|251aa|up_6|NC_011831.1_2204191_2204944_+	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|225aa|up_5|NC_011831.1_2204960_2205635_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|81aa|up_4|NC_011831.1_2205724_2205967_+	COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]	NA|212aa|up_3|NC_011831.1_2205985_2206621_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|261aa|up_2|NC_011831.1_2206681_2207464_-	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|322aa|up_1|NC_011831.1_2208669_2209635_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|66aa|up_0|NC_011831.1_2210022_2210220_+	NA	NA|453aa|down_0|NC_011831.1_2211960_2213319_+	COG0732, HsdS, Restriction endonuclease S subunits [Defense mechanisms]	NA|221aa|down_1|NC_011831.1_2213305_2213968_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|983aa|down_2|NC_011831.1_2213964_2216913_+	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|112aa|down_3|NC_011831.1_2216909_2217245_+	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|312aa|down_4|NC_011831.1_2218009_2218945_-	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup	NA|119aa|down_5|NC_011831.1_2219323_2219680_-	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown]	NA|114aa|down_6|NC_011831.1_2219792_2220134_-	NA	NA|280aa|down_7|NC_011831.1_2220188_2221028_-	NA	NA|183aa|down_8|NC_011831.1_2221311_2221860_-	NA	NA|1455aa|down_9|NC_011831.1_2222023_2226388_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	18	2372124-2372222	15	CRISPRCasFinder	no	csx15	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	CGCAAAGGACGGTAACGCACAGA	23	1	2	2372147-2372199|2372147-2372199	NC_011831.1_2372049-2372101|NC_011831.1_2372254-2372306	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|99aa|down_5|NC_011831.1_2376838_2377135_-,NA|118aa|down_6|NC_011831.1_2377472_2377826_+,NA|89aa|down_7|NC_011831.1_2377822_2378089_-	NA|278aa|up_9|NC_011831.1_2359572_2360406_-	pfam01940, DUF92, Integral membrane protein DUF92	NA|158aa|up_8|NC_011831.1_2360500_2360974_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|412aa|up_7|NC_011831.1_2361252_2362488_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|157aa|up_6|NC_011831.1_2362735_2363206_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|240aa|up_5|NC_011831.1_2363213_2363933_-	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated	NA|91aa|up_4|NC_011831.1_2364513_2364786_-	TIGR04167, radical_SAM_domain_protein, radical SAM/Cys-rich domain protein	NA|634aa|up_3|NC_011831.1_2364931_2366833_-	COG2720, COG2720, Uncharacterized vancomycin resistance protein [Defense mechanisms]	NA|564aa|up_2|NC_011831.1_2367145_2368837_-	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily	NA|322aa|up_1|NC_011831.1_2369037_2370003_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|613aa|up_0|NC_011831.1_2370056_2371895_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|389aa|down_0|NC_011831.1_2372557_2373724_-	pfam03417, AAT, Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase	NA|389aa|down_1|NC_011831.1_2373838_2375005_-	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS	csx15|129aa|down_2|NC_011831.1_2375015_2375402_-	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15	NA|316aa|down_3|NC_011831.1_2375493_2376441_-	pfam09084, NMT1, NMT1/THI5 like	NA|129aa|down_4|NC_011831.1_2376455_2376842_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|99aa|down_5|NC_011831.1_2376838_2377135_-	NA	NA|118aa|down_6|NC_011831.1_2377472_2377826_+	NA	NA|89aa|down_7|NC_011831.1_2377822_2378089_-	NA	NA|259aa|down_8|NC_011831.1_2378108_2378885_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|308aa|down_9|NC_011831.1_2379034_2379958_-	PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	19	2482025-2482109	16	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	TCTCCGCGCCTGTGCGTTGCGGTGT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|263aa|up_4|NC_011831.1_2474551_2475340_+,NA|176aa|up_2|NC_011831.1_2477511_2478039_-,NA|188aa|down_1|NC_011831.1_2483207_2483771_+,NA|108aa|down_2|NC_011831.1_2484344_2484668_+,NA|400aa|down_4|NC_011831.1_2485304_2486504_-,NA|469aa|down_5|NC_011831.1_2486507_2487914_-	NA|374aa|up_9|NC_011831.1_2467658_2468780_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|311aa|up_8|NC_011831.1_2468770_2469703_-	COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]	NA|802aa|up_7|NC_011831.1_2469793_2472199_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|325aa|up_6|NC_011831.1_2472323_2473298_+	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	NA|285aa|up_5|NC_011831.1_2473315_2474170_+	COG0434, SgcQ, Predicted TIM-barrel enzyme [General function prediction only]	NA|263aa|up_4|NC_011831.1_2474551_2475340_+	NA	NA|537aa|up_3|NC_011831.1_2475440_2477051_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|176aa|up_2|NC_011831.1_2477511_2478039_-	NA	NA|1005aa|up_1|NC_011831.1_2478035_2481050_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|127aa|up_0|NC_011831.1_2481212_2481593_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|310aa|down_0|NC_011831.1_2482112_2483042_-	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|188aa|down_1|NC_011831.1_2483207_2483771_+	NA	NA|108aa|down_2|NC_011831.1_2484344_2484668_+	NA	NA|177aa|down_3|NC_011831.1_2484669_2485200_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|400aa|down_4|NC_011831.1_2485304_2486504_-	NA	NA|469aa|down_5|NC_011831.1_2486507_2487914_-	NA	NA|227aa|down_6|NC_011831.1_2488149_2488830_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|381aa|down_7|NC_011831.1_2489071_2490214_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|270aa|down_8|NC_011831.1_2490546_2491356_-	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	NA|531aa|down_9|NC_011831.1_2491618_2493211_+	TIGR02310, HpaB-2, 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	20	2770721-2771851	4	CRT	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	ACGGCACCGGTCGGCAACGGG	21	14	14	2770742-2770759|2770781-2770798|2770914-2770931|2771000-2771017|2771039-2771056|2771078-2771095|2771258-2771275|2771297-2771314|2771336-2771353|2771375-2771392|2771414-2771431|2771453-2771470|2771492-2771509|2771672-2771689	NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720|NC_011831.1_2770703-2770720	NA	26	26	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|165aa|down_6|NC_011831.1_2781709_2782204_-,NA|150aa|down_7|NC_011831.1_2782133_2782583_-,NA|63aa|down_9|NC_011831.1_2783426_2783615_+	NA|359aa|up_9|NC_011831.1_2757801_2758878_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|423aa|up_8|NC_011831.1_2758894_2760163_-	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]	NA|332aa|up_7|NC_011831.1_2760321_2761317_+	pfam00932, LTD, Lamin Tail Domain	NA|390aa|up_6|NC_011831.1_2761543_2762713_-	pfam02517, Abi, CAAX protease self-immunity	NA|219aa|up_5|NC_011831.1_2762865_2763522_-	TIGR01990, bPGM, beta-phosphoglucomutase	NA|721aa|up_4|NC_011831.1_2763691_2765854_-	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|309aa|up_3|NC_011831.1_2765903_2766830_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|up_2|NC_011831.1_2766844_2767735_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|446aa|up_1|NC_011831.1_2768000_2769338_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|340aa|up_0|NC_011831.1_2769538_2770558_-	cd06292, PBP1_AglR_RafR-like, Ligand-binding domain of uncharacterized DNA transcription repressors highly similar to that of the repressors specific raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators	NA|478aa|down_0|NC_011831.1_2771904_2773338_-	cd16367, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|597aa|down_1|NC_011831.1_2773452_2775243_+	COG2414, COG2414, Aldehyde:ferredoxin oxidoreductase [Energy production and conversion]	NA|371aa|down_2|NC_011831.1_2775444_2776557_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|504aa|down_3|NC_011831.1_2776598_2778110_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|615aa|down_4|NC_011831.1_2778106_2779951_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|326aa|down_5|NC_011831.1_2780689_2781667_+	pfam02517, Abi, CAAX protease self-immunity	NA|165aa|down_6|NC_011831.1_2781709_2782204_-	NA	NA|150aa|down_7|NC_011831.1_2782133_2782583_-	NA	NA|150aa|down_8|NC_011831.1_2782937_2783387_+	PRK00326, PRK00326, transcriptional regulator MraZ	NA|63aa|down_9|NC_011831.1_2783426_2783615_+	NA
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	21	2819335-2819431	17	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GCGCTCCACCAGGCCATCACCAC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|235aa|up_8|NC_011831.1_2811823_2812528_+,NA|80aa|down_6|NC_011831.1_2825243_2825483_-,NA|88aa|down_9|NC_011831.1_2827947_2828211_+	NA|506aa|up_9|NC_011831.1_2810087_2811605_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|235aa|up_8|NC_011831.1_2811823_2812528_+	NA	NA|195aa|up_7|NC_011831.1_2813162_2813747_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|195aa|up_6|NC_011831.1_2813876_2814461_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|181aa|up_5|NC_011831.1_2814590_2815133_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|181aa|up_4|NC_011831.1_2815536_2816079_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|181aa|up_3|NC_011831.1_2816782_2817325_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|181aa|up_2|NC_011831.1_2817421_2817964_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|195aa|up_1|NC_011831.1_2818060_2818645_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|181aa|up_0|NC_011831.1_2818741_2819284_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|246aa|down_0|NC_011831.1_2819945_2820683_+	pfam07788, PDDEXK_10, PD-(D/E)XK nuclease superfamily	NA|351aa|down_1|NC_011831.1_2820710_2821763_-	TIGR02442, Uncharacterized_protein_Rv2850c/MT2916, cobaltochelatase subunit	NA|95aa|down_2|NC_011831.1_2821806_2822091_-	pfam04456, DUF503, Protein of unknown function (DUF503)	NA|223aa|down_3|NC_011831.1_2822101_2822770_-	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain	NA|399aa|down_4|NC_011831.1_2822776_2823973_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|401aa|down_5|NC_011831.1_2824006_2825209_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|80aa|down_6|NC_011831.1_2825243_2825483_-	NA	NA|327aa|down_7|NC_011831.1_2825531_2826512_+	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|334aa|down_8|NC_011831.1_2826524_2827526_+	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen	NA|88aa|down_9|NC_011831.1_2827947_2828211_+	NA
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	22	3037744-3037856	18	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GACCCTCACTCTTGTGTCCAATATCAGTATAGCAAACGT	39	1	1	3037783-3037817	NC_011831.1_685489-685523	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|82aa|up_9|NC_011831.1_3023401_3023647_-,NA|416aa|up_0|NC_011831.1_3036343_3037591_-,NA|409aa|down_0|NC_011831.1_3037980_3039207_+	NA|82aa|up_9|NC_011831.1_3023401_3023647_-	NA	NA|192aa|up_8|NC_011831.1_3023840_3024416_+	pfam09366, DUF1997, Protein of unknown function (DUF1997)	NA|1177aa|up_7|NC_011831.1_3024575_3028106_+	TIGR02103, pullulanase-like_protein_starch, alpha-1,6-glucosidases, pullulanase-type	NA|629aa|up_6|NC_011831.1_3028582_3030469_-	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|354aa|up_5|NC_011831.1_3030612_3031674_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|365aa|up_4|NC_011831.1_3031746_3032841_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|212aa|up_3|NC_011831.1_3033019_3033655_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|205aa|up_2|NC_011831.1_3033748_3034363_+	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|393aa|up_1|NC_011831.1_3034703_3035882_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|416aa|up_0|NC_011831.1_3036343_3037591_-	NA	NA|409aa|down_0|NC_011831.1_3037980_3039207_+	NA	NA|1261aa|down_1|NC_011831.1_3039658_3043441_-	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed	NA|485aa|down_2|NC_011831.1_3044113_3045568_+	cd01357, Aspartase, Aspartase	NA|535aa|down_3|NC_011831.1_3045633_3047238_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|400aa|down_4|NC_011831.1_3047251_3048451_-	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|189aa|down_5|NC_011831.1_3049696_3050263_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|179aa|down_6|NC_011831.1_3050415_3050952_+	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|189aa|down_7|NC_011831.1_3050985_3051552_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|221aa|down_8|NC_011831.1_3051565_3052228_-	pfam13197, DUF4013, Protein of unknown function (DUF4013)	NA|242aa|down_9|NC_011831.1_3052909_3053635_-	pfam13197, DUF4013, Protein of unknown function (DUF4013)
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	23	3104633-3104728	19	CRISPRCasFinder	no	cas14j	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Unclear	TCCCCTTTTCAGGAATTAGGCTTCTA	26	0	0	NA	NA	NA	1	1	TypeV	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA	NA|108aa|up_9|NC_011831.1_3095795_3096119_+	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain	NA|255aa|up_8|NC_011831.1_3096094_3096859_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|284aa|up_7|NC_011831.1_3097046_3097898_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|216aa|up_6|NC_011831.1_3097955_3098603_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|311aa|up_5|NC_011831.1_3098599_3099532_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|205aa|up_4|NC_011831.1_3099657_3100272_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|240aa|up_3|NC_011831.1_3100332_3101052_+	COG2386, CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]	NA|565aa|up_2|NC_011831.1_3101106_3102801_-	cd03680, MM_CoA_mutase_ICM_like, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, isobutyryl-CoA mutase (ICM)-like subfamily; contains archaeal and bacterial proteins similar to the large subunit of Streptomyces cinnamonensis coenzyme B12-dependent ICM	NA|117aa|up_1|NC_011831.1_3103994_3104345_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|32aa|up_0|NC_011831.1_3104476_3104572_+	pfam06347, SH3_4, Bacterial SH3 domain	NA|59aa|down_0|NC_011831.1_3105964_3106141_+	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256)	NA|287aa|down_1|NC_011831.1_3106224_3107085_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|299aa|down_2|NC_011831.1_3107136_3108033_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|262aa|down_3|NC_011831.1_3108025_3108811_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|998aa|down_4|NC_011831.1_3108973_3111967_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|250aa|down_5|NC_011831.1_3111967_3112717_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|117aa|down_6|NC_011831.1_3112761_3113112_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|354aa|down_7|NC_011831.1_3113263_3114325_+	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown]	NA|431aa|down_8|NC_011831.1_3114415_3115708_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|222aa|down_9|NC_011831.1_3115711_3116377_-	pfam02586, SRAP, SOS response associated peptidase (SRAP)
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	24	3107297-3107432	20	CRISPRCasFinder	no	cas14j	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Unclear	GTGGGCCGCGTCCGGTGGTGACGCGGGTGCATCGTGGTGCGCCGCC	46	0	0	NA	NA	NA	1	1	TypeV	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|138aa|down_7|NC_011831.1_3116397_3116811_-,NA|252aa|down_8|NC_011831.1_3116941_3117697_-	NA|216aa|up_9|NC_011831.1_3097955_3098603_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|311aa|up_8|NC_011831.1_3098599_3099532_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|205aa|up_7|NC_011831.1_3099657_3100272_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|240aa|up_6|NC_011831.1_3100332_3101052_+	COG2386, CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]	NA|565aa|up_5|NC_011831.1_3101106_3102801_-	cd03680, MM_CoA_mutase_ICM_like, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, isobutyryl-CoA mutase (ICM)-like subfamily; contains archaeal and bacterial proteins similar to the large subunit of Streptomyces cinnamonensis coenzyme B12-dependent ICM	NA|117aa|up_4|NC_011831.1_3103994_3104345_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|32aa|up_3|NC_011831.1_3104476_3104572_+	pfam06347, SH3_4, Bacterial SH3 domain	cas14j|371aa|up_2|NC_011831.1_3104725_3105838_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|59aa|up_1|NC_011831.1_3105964_3106141_+	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256)	NA|287aa|up_0|NC_011831.1_3106224_3107085_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|262aa|down_0|NC_011831.1_3108025_3108811_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|998aa|down_1|NC_011831.1_3108973_3111967_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|250aa|down_2|NC_011831.1_3111967_3112717_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|117aa|down_3|NC_011831.1_3112761_3113112_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|354aa|down_4|NC_011831.1_3113263_3114325_+	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown]	NA|431aa|down_5|NC_011831.1_3114415_3115708_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|222aa|down_6|NC_011831.1_3115711_3116377_-	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|138aa|down_7|NC_011831.1_3116397_3116811_-	NA	NA|252aa|down_8|NC_011831.1_3116941_3117697_-	NA	NA|1050aa|down_9|NC_011831.1_3118088_3121238_+	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	25	3245593-3245737	21	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GCGTGATCGGTGTTCATCCGTCCGATCGGTGCCATCCGTGGGCGCTG	47	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|175aa|down_3|NC_011831.1_3250308_3250833_+,NA|143aa|down_5|NC_011831.1_3251434_3251863_+	NA|410aa|up_9|NC_011831.1_3236460_3237690_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|204aa|up_8|NC_011831.1_3237617_3238229_+	PRK09289, PRK09289, riboflavin synthase	NA|215aa|up_7|NC_011831.1_3238209_3238854_+	pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase	NA|169aa|up_6|NC_011831.1_3238863_3239370_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|377aa|up_5|NC_011831.1_3239495_3240626_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|238aa|up_4|NC_011831.1_3240988_3241702_+	smart00448, REC, cheY-homologous receiver domain	NA|370aa|up_3|NC_011831.1_3241795_3242905_-	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|238aa|up_2|NC_011831.1_3242904_3243618_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|331aa|up_1|NC_011831.1_3243733_3244726_-	pfam05096, Glu_cyclase_2, Glutamine cyclotransferase	NA|155aa|up_0|NC_011831.1_3245005_3245470_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|654aa|down_0|NC_011831.1_3246080_3248042_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|390aa|down_1|NC_011831.1_3248503_3249673_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|125aa|down_2|NC_011831.1_3249757_3250132_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|175aa|down_3|NC_011831.1_3250308_3250833_+	NA	NA|145aa|down_4|NC_011831.1_3250935_3251370_+	pfam00034, Cytochrom_C, Cytochrome c	NA|143aa|down_5|NC_011831.1_3251434_3251863_+	NA	NA|475aa|down_6|NC_011831.1_3252049_3253474_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|283aa|down_7|NC_011831.1_3253584_3254433_-	cd13965, PT_UbiA_3, UbiA family of prenyltransferases (PTases), Unknown subgroup	NA|343aa|down_8|NC_011831.1_3254773_3255802_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|360aa|down_9|NC_011831.1_3255876_3256956_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	26	3310090-3310197	22	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	ACGCAAAGGACGTAACGCAAAGGCGCAAAGG	31	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|171aa|down_7|NC_011831.1_3324592_3325105_-	NA|374aa|up_9|NC_011831.1_3294601_3295723_-	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ	NA|614aa|up_8|NC_011831.1_3295764_3297606_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|193aa|up_7|NC_011831.1_3297729_3298308_-	pfam01025, GrpE, GrpE	NA|377aa|up_6|NC_011831.1_3298366_3299497_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|450aa|up_5|NC_011831.1_3299745_3301095_+	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase	NA|734aa|up_4|NC_011831.1_3301169_3303371_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|604aa|up_3|NC_011831.1_3303582_3305394_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|377aa|up_2|NC_011831.1_3305397_3306528_-	smart00933, NurA, NurA nuclease	NA|394aa|up_1|NC_011831.1_3306511_3307693_-	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|748aa|up_0|NC_011831.1_3307832_3310076_+	TIGR02478, ATP-dependent_6-phosphofructokinase, 6-phosphofructokinase, eukaryotic type	NA|176aa|down_0|NC_011831.1_3310272_3310800_-	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb)	NA|93aa|down_1|NC_011831.1_3310937_3311216_-	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|654aa|down_2|NC_011831.1_3311289_3313251_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|1501aa|down_3|NC_011831.1_3313330_3317833_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1228aa|down_4|NC_011831.1_3318145_3321829_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|470aa|down_5|NC_011831.1_3322181_3323591_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|237aa|down_6|NC_011831.1_3323785_3324496_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|171aa|down_7|NC_011831.1_3324592_3325105_-	NA	NA|995aa|down_8|NC_011831.1_3325220_3328205_-	PRK06148, PRK06148, hypothetical protein; Provisional	NA|2157aa|down_9|NC_011831.1_3328509_3334980_-	TIGR02103, pullulanase-like_protein_starch, alpha-1,6-glucosidases, pullulanase-type
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	27	3342947-3343136	5,23	PILER-CR,CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GGCGCGAAGGACGCAGAGCACGCAGAGGTTTTTTGTTGT,GGCGCGAAGGACGCAGAGCACGCAGAGGTTTTTTGTTG	39,38	0	0	NA	NA	NA:NA	2,2	2	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|171aa|up_7|NC_011831.1_3324592_3325105_-,NA|699aa|down_3|NC_011831.1_3347933_3350030_+,NA|71aa|down_5|NC_011831.1_3350833_3351046_+,NA|99aa|down_6|NC_011831.1_3351221_3351518_+	NA|470aa|up_9|NC_011831.1_3322181_3323591_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|237aa|up_8|NC_011831.1_3323785_3324496_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|171aa|up_7|NC_011831.1_3324592_3325105_-	NA	NA|995aa|up_6|NC_011831.1_3325220_3328205_-	PRK06148, PRK06148, hypothetical protein; Provisional	NA|2157aa|up_5|NC_011831.1_3328509_3334980_-	TIGR02103, pullulanase-like_protein_starch, alpha-1,6-glucosidases, pullulanase-type	NA|315aa|up_4|NC_011831.1_3336736_3337681_-	TIGR02997, RNA_polymerase_sigma_subunit_sigma70/sigma32, RNA polymerase sigma factor, cyanobacterial RpoD-like family	NA|614aa|up_3|NC_011831.1_3337909_3339751_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|248aa|up_2|NC_011831.1_3339920_3340664_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|474aa|up_1|NC_011831.1_3340909_3342331_+	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|151aa|up_0|NC_011831.1_3342393_3342846_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|232aa|down_0|NC_011831.1_3343203_3343899_+	pfam02589, LUD_dom, LUD domain	NA|323aa|down_1|NC_011831.1_3343974_3344943_+	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|725aa|down_2|NC_011831.1_3345201_3347376_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|699aa|down_3|NC_011831.1_3347933_3350030_+	NA	NA|133aa|down_4|NC_011831.1_3350216_3350615_-	PRK09496, trkA, Trk system potassium transporter TrkA	NA|71aa|down_5|NC_011831.1_3350833_3351046_+	NA	NA|99aa|down_6|NC_011831.1_3351221_3351518_+	NA	NA|797aa|down_7|NC_011831.1_3351876_3354267_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|226aa|down_8|NC_011831.1_3354465_3355143_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|498aa|down_9|NC_011831.1_3355156_3356650_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	28	3354283-3354357	24	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GACGCCAAGGGGCAAAGACGCAG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|699aa|up_4|NC_011831.1_3347933_3350030_+,NA|71aa|up_2|NC_011831.1_3350833_3351046_+,NA|99aa|up_1|NC_011831.1_3351221_3351518_+,NA|239aa|down_6|NC_011831.1_3361180_3361897_+,NA|217aa|down_8|NC_011831.1_3362907_3363558_+,NA|93aa|down_9|NC_011831.1_3363830_3364109_+	NA|474aa|up_9|NC_011831.1_3340909_3342331_+	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|151aa|up_8|NC_011831.1_3342393_3342846_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|232aa|up_7|NC_011831.1_3343203_3343899_+	pfam02589, LUD_dom, LUD domain	NA|323aa|up_6|NC_011831.1_3343974_3344943_+	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|725aa|up_5|NC_011831.1_3345201_3347376_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|699aa|up_4|NC_011831.1_3347933_3350030_+	NA	NA|133aa|up_3|NC_011831.1_3350216_3350615_-	PRK09496, trkA, Trk system potassium transporter TrkA	NA|71aa|up_2|NC_011831.1_3350833_3351046_+	NA	NA|99aa|up_1|NC_011831.1_3351221_3351518_+	NA	NA|797aa|up_0|NC_011831.1_3351876_3354267_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|226aa|down_0|NC_011831.1_3354465_3355143_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|498aa|down_1|NC_011831.1_3355156_3356650_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|209aa|down_2|NC_011831.1_3356721_3357348_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|350aa|down_3|NC_011831.1_3357420_3358470_-	pfam09084, NMT1, NMT1/THI5 like	NA|268aa|down_4|NC_011831.1_3358550_3359354_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|301aa|down_5|NC_011831.1_3360151_3361054_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|239aa|down_6|NC_011831.1_3361180_3361897_+	NA	NA|194aa|down_7|NC_011831.1_3362041_3362623_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|217aa|down_8|NC_011831.1_3362907_3363558_+	NA	NA|93aa|down_9|NC_011831.1_3363830_3364109_+	NA
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	29	3588879-3588987	25	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	TCTTGATGATCTTTCGACAACTGACCGGTTGTA	33	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA,NA|98aa|down_4|NC_011831.1_3591722_3592016_-,NA|528aa|down_5|NC_011831.1_3592278_3593862_+	NA|215aa|up_9|NC_011831.1_3577426_3578071_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|450aa|up_8|NC_011831.1_3578229_3579579_+	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]	NA|278aa|up_7|NC_011831.1_3579635_3580469_-	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|280aa|up_6|NC_011831.1_3580540_3581380_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|311aa|up_5|NC_011831.1_3581572_3582505_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|332aa|up_4|NC_011831.1_3582575_3583571_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|370aa|up_3|NC_011831.1_3583952_3585062_+	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein	NA|126aa|up_2|NC_011831.1_3585071_3585449_-	pfam13473, Cupredoxin_1, Cupredoxin-like domain	NA|791aa|up_1|NC_011831.1_3585711_3588084_+	PRK12647, PRK12647, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|165aa|up_0|NC_011831.1_3588070_3588565_+	PRK12509, PRK12509, Na+/H+ antiporter subunit B	NA|506aa|down_0|NC_011831.1_3589042_3590560_+	PRK12663, PRK12663, Na+/H+ antiporter subunit D	NA|171aa|down_1|NC_011831.1_3590568_3591081_+	PRK12651, PRK12651, Na+/H+ antiporter subunit E	NA|88aa|down_2|NC_011831.1_3591089_3591353_+	PRK12600, PRK12600, Na(+)/H(+) antiporter subunit F1	NA|118aa|down_3|NC_011831.1_3591352_3591706_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|98aa|down_4|NC_011831.1_3591722_3592016_-	NA	NA|528aa|down_5|NC_011831.1_3592278_3593862_+	NA	NA|219aa|down_6|NC_011831.1_3595816_3596473_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|195aa|down_7|NC_011831.1_3596722_3597307_+	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	NA|140aa|down_8|NC_011831.1_3598027_3598447_+	pfam07736, CM_1, Chorismate mutase type I	NA|338aa|down_9|NC_011831.1_3598635_3599649_+	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	30	3623032-3623139	26	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GGGATGGGTCATCGCACCCGTCCCTTTTTTT	31	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|260aa|up_9|NC_011831.1_3610290_3611070_-,NA|166aa|up_4|NC_011831.1_3617320_3617818_-,NA	NA|260aa|up_9|NC_011831.1_3610290_3611070_-	NA	NA|273aa|up_8|NC_011831.1_3611070_3611889_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|287aa|up_7|NC_011831.1_3612077_3612938_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|277aa|up_6|NC_011831.1_3613044_3613875_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|1032aa|up_5|NC_011831.1_3614182_3617278_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|166aa|up_4|NC_011831.1_3617320_3617818_-	NA	NA|254aa|up_3|NC_011831.1_3618062_3618824_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|309aa|up_2|NC_011831.1_3618828_3619755_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|414aa|up_1|NC_011831.1_3619790_3621032_+	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|627aa|up_0|NC_011831.1_3621133_3623014_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|402aa|down_0|NC_011831.1_3627128_3628334_-	cd07302, CHD, cyclase homology domain	NA|399aa|down_1|NC_011831.1_3628476_3629673_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|81aa|down_2|NC_011831.1_3629677_3629920_-	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor	NA|230aa|down_3|NC_011831.1_3630069_3630759_+	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|1014aa|down_4|NC_011831.1_3630755_3633797_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|252aa|down_5|NC_011831.1_3633966_3634722_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|365aa|down_6|NC_011831.1_3634792_3635887_-	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|339aa|down_7|NC_011831.1_3635902_3636919_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|560aa|down_8|NC_011831.1_3637113_3638793_-	cd01660, ba3-like_Oxidase_I, ba3-like heme-copper oxidase subunit I	NA|163aa|down_9|NC_011831.1_3638880_3639369_-	cd13913, ba3_CcO_II_C, C-terminal cupredoxin domain of Ba3-like heme-copper oxidase subunit II
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	31	3742097-3742206	27	CRISPRCasFinder	no	WYL	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Unclear	GTGGGTATCCGGTGGTGTAGAACAGGTGTTGGTGAG	36	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|65aa|up_2|NC_011831.1_3738963_3739158_-,NA|68aa|down_0|NC_011831.1_3742368_3742572_-,NA|81aa|down_6|NC_011831.1_3746191_3746434_-,NA|301aa|down_7|NC_011831.1_3746446_3747349_-	NA|306aa|up_9|NC_011831.1_3733046_3733964_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_8|NC_011831.1_3734037_3735804_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|305aa|up_7|NC_011831.1_3735942_3736857_+	pfam00072, Response_reg, Response regulator receiver domain	NA|104aa|up_6|NC_011831.1_3736974_3737286_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|92aa|up_5|NC_011831.1_3737299_3737575_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|100aa|up_4|NC_011831.1_3737587_3737887_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	WYL|327aa|up_3|NC_011831.1_3737979_3738960_-	pfam13280, WYL, WYL domain	NA|65aa|up_2|NC_011831.1_3738963_3739158_-	NA	NA|385aa|up_1|NC_011831.1_3739253_3740408_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|171aa|up_0|NC_011831.1_3740430_3740943_+	pfam00731, AIRC, AIR carboxylase	NA|68aa|down_0|NC_011831.1_3742368_3742572_-	NA	NA|244aa|down_1|NC_011831.1_3742559_3743291_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|194aa|down_2|NC_011831.1_3743358_3743940_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|221aa|down_3|NC_011831.1_3744010_3744673_-	TIGR02977, phage_shock_protein_A, phage shock protein A	NA|239aa|down_4|NC_011831.1_3744843_3745560_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|208aa|down_5|NC_011831.1_3745556_3746180_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|81aa|down_6|NC_011831.1_3746191_3746434_-	NA	NA|301aa|down_7|NC_011831.1_3746446_3747349_-	NA	NA|213aa|down_8|NC_011831.1_3747444_3748083_-	pfam15293, NUFIP2, Nuclear fragile X mental retardation-interacting protein 2	NA|228aa|down_9|NC_011831.1_3748235_3748919_-	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	32	4039859-4039956	28	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	AACACGGCCCGGCTTGGTGGCGG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|119aa|up_8|NC_011831.1_4024317_4024674_+,NA|163aa|up_7|NC_011831.1_4024894_4025383_+,NA|183aa|down_0|NC_011831.1_4041031_4041580_-	NA|149aa|up_9|NC_011831.1_4023400_4023847_-	TIGR01991, HscA, Fe-S protein assembly chaperone HscA	NA|119aa|up_8|NC_011831.1_4024317_4024674_+	NA	NA|163aa|up_7|NC_011831.1_4024894_4025383_+	NA	NA|198aa|up_6|NC_011831.1_4026075_4026669_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1211aa|up_5|NC_011831.1_4026665_4030298_-	cd16731, RING-HC_MKRN2, RING finger, HC subclass, found in makorin-2 (MKRN2) and similar proteins	NA|1154aa|up_4|NC_011831.1_4030294_4033756_-	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family	NA|826aa|up_3|NC_011831.1_4034125_4036603_+	pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31	NA|177aa|up_2|NC_011831.1_4036742_4037273_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|144aa|up_1|NC_011831.1_4037224_4037656_+	cd00562, NifX_NifB, This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme	NA|361aa|up_0|NC_011831.1_4038137_4039220_+	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|183aa|down_0|NC_011831.1_4041031_4041580_-	NA	NA|532aa|down_1|NC_011831.1_4042166_4043762_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|285aa|down_2|NC_011831.1_4043801_4044656_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|522aa|down_3|NC_011831.1_4044896_4046462_-	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA	NA|260aa|down_4|NC_011831.1_4047496_4048276_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|346aa|down_5|NC_011831.1_4049600_4050638_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|407aa|down_6|NC_011831.1_4050634_4051855_-	pfam13646, HEAT_2, HEAT repeats	NA|240aa|down_7|NC_011831.1_4052265_4052985_-	pfam11487, RestrictionSfiI, Type II restriction enzyme SfiI	NA|348aa|down_8|NC_011831.1_4052981_4054025_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|143aa|down_9|NC_011831.1_4054190_4054619_-	pfam08939, DUF1917, Domain of unknown function (DUF1917)
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	33	4041821-4041933	29	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	GTTCGAATAATAATTTTGCCTGAAGGTTGTCCACAAG	37	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|163aa|up_9|NC_011831.1_4024894_4025383_+,NA|183aa|up_0|NC_011831.1_4041031_4041580_-,NA|153aa|down_9|NC_011831.1_4054834_4055293_-	NA|163aa|up_9|NC_011831.1_4024894_4025383_+	NA	NA|198aa|up_8|NC_011831.1_4026075_4026669_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1211aa|up_7|NC_011831.1_4026665_4030298_-	cd16731, RING-HC_MKRN2, RING finger, HC subclass, found in makorin-2 (MKRN2) and similar proteins	NA|1154aa|up_6|NC_011831.1_4030294_4033756_-	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family	NA|826aa|up_5|NC_011831.1_4034125_4036603_+	pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31	NA|177aa|up_4|NC_011831.1_4036742_4037273_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|144aa|up_3|NC_011831.1_4037224_4037656_+	cd00562, NifX_NifB, This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme	NA|361aa|up_2|NC_011831.1_4038137_4039220_+	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|602aa|up_1|NC_011831.1_4039147_4040953_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|183aa|up_0|NC_011831.1_4041031_4041580_-	NA	NA|532aa|down_0|NC_011831.1_4042166_4043762_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|285aa|down_1|NC_011831.1_4043801_4044656_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|522aa|down_2|NC_011831.1_4044896_4046462_-	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA	NA|260aa|down_3|NC_011831.1_4047496_4048276_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|346aa|down_4|NC_011831.1_4049600_4050638_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|407aa|down_5|NC_011831.1_4050634_4051855_-	pfam13646, HEAT_2, HEAT repeats	NA|240aa|down_6|NC_011831.1_4052265_4052985_-	pfam11487, RestrictionSfiI, Type II restriction enzyme SfiI	NA|348aa|down_7|NC_011831.1_4052981_4054025_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|143aa|down_8|NC_011831.1_4054190_4054619_-	pfam08939, DUF1917, Domain of unknown function (DUF1917)	NA|153aa|down_9|NC_011831.1_4054834_4055293_-	NA
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	34	4149375-4149487	30	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	ACGGCGATGCCGTGCCCCTACGGGTGGCGTCTGTGCG	37	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|366aa|up_9|NC_011831.1_4131372_4132470_+,NA|214aa|up_6|NC_011831.1_4133465_4134107_+,NA|91aa|down_7|NC_011831.1_4158895_4159168_+,NA|88aa|down_9|NC_011831.1_4159443_4159707_+	NA|366aa|up_9|NC_011831.1_4131372_4132470_+	NA	NA|226aa|up_8|NC_011831.1_4132441_4133119_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|94aa|up_7|NC_011831.1_4133134_4133416_+	pfam04368, DUF507, Protein of unknown function (DUF507)	NA|214aa|up_6|NC_011831.1_4133465_4134107_+	NA	NA|133aa|up_5|NC_011831.1_4134124_4134523_+	pfam13115, YtkA, YtkA-like	NA|298aa|up_4|NC_011831.1_4134534_4135428_+	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|332aa|up_3|NC_011831.1_4135417_4136413_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|1204aa|up_2|NC_011831.1_4143092_4146704_-	pfam12770, CHAT, CHAT domain	NA|515aa|up_1|NC_011831.1_4146870_4148415_+	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|276aa|up_0|NC_011831.1_4148448_4149276_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|100aa|down_0|NC_011831.1_4149583_4149883_+	cd10151, TthCsoR-like_DUF156, Thermus thermophilus CsoR, a Cu(I)-sensing transcriptional regulator, and related domains; this domain family was previously known as part of DUF156	NA|75aa|down_1|NC_011831.1_4149899_4150124_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|850aa|down_2|NC_011831.1_4150209_4152759_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|213aa|down_3|NC_011831.1_4153744_4154383_+	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|445aa|down_4|NC_011831.1_4154379_4155714_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|300aa|down_5|NC_011831.1_4155685_4156585_+	pfam00480, ROK, ROK family	NA|561aa|down_6|NC_011831.1_4157203_4158886_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|91aa|down_7|NC_011831.1_4158895_4159168_+	NA	NA|43aa|down_8|NC_011831.1_4159298_4159427_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|88aa|down_9|NC_011831.1_4159443_4159707_+	NA
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	35	4152808-4153632	5	CRT	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	CNNNNAGCNNGAGCCGCACNGCCG	24	8	15	4152832-4152900|4152925-4152981|4153074-4153106|4153074-4153106|4153074-4153106|4153184-4153213|4153238-4153255|4153238-4153255|4153238-4153255|4153238-4153255|4153347-4153377|4153469-4153498|4153523-4153555|4153523-4153555|4153523-4153555	NC_011831.1_4153580-4153648|NC_011831.1_4152804-4152860|NC_011831.1_4152776-4152808|NC_011831.1_4152790-4152822|NC_011831.1_4152762-4152794|NC_011831.1_4153633-4153662|NC_011831.1_4152776-4152793|NC_011831.1_4152790-4152807|NC_011831.1_4152804-4152821|NC_011831.1_4152762-4152779|NC_011831.1_4153633-4153663|NC_011831.1_4153633-4153662|NC_011831.1_4152776-4152808|NC_011831.1_4152790-4152822|NC_011831.1_4152762-4152794	NA	13	13	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|214aa|up_9|NC_011831.1_4133465_4134107_+,NA|91aa|down_4|NC_011831.1_4158895_4159168_+,NA|88aa|down_6|NC_011831.1_4159443_4159707_+,NA|132aa|down_8|NC_011831.1_4161382_4161778_-	NA|214aa|up_9|NC_011831.1_4133465_4134107_+	NA	NA|133aa|up_8|NC_011831.1_4134124_4134523_+	pfam13115, YtkA, YtkA-like	NA|298aa|up_7|NC_011831.1_4134534_4135428_+	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|332aa|up_6|NC_011831.1_4135417_4136413_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|1204aa|up_5|NC_011831.1_4143092_4146704_-	pfam12770, CHAT, CHAT domain	NA|515aa|up_4|NC_011831.1_4146870_4148415_+	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|276aa|up_3|NC_011831.1_4148448_4149276_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|100aa|up_2|NC_011831.1_4149583_4149883_+	cd10151, TthCsoR-like_DUF156, Thermus thermophilus CsoR, a Cu(I)-sensing transcriptional regulator, and related domains; this domain family was previously known as part of DUF156	NA|75aa|up_1|NC_011831.1_4149899_4150124_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|850aa|up_0|NC_011831.1_4150209_4152759_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|213aa|down_0|NC_011831.1_4153744_4154383_+	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|445aa|down_1|NC_011831.1_4154379_4155714_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|300aa|down_2|NC_011831.1_4155685_4156585_+	pfam00480, ROK, ROK family	NA|561aa|down_3|NC_011831.1_4157203_4158886_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|91aa|down_4|NC_011831.1_4158895_4159168_+	NA	NA|43aa|down_5|NC_011831.1_4159298_4159427_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|88aa|down_6|NC_011831.1_4159443_4159707_+	NA	NA|405aa|down_7|NC_011831.1_4160017_4161232_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|132aa|down_8|NC_011831.1_4161382_4161778_-	NA	NA|199aa|down_9|NC_011831.1_4161881_4162478_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	36	4163755-4163838	31	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	CAATTCGCTCTCCGCTCATTCGTCC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|91aa|up_7|NC_011831.1_4158895_4159168_+,NA|88aa|up_5|NC_011831.1_4159443_4159707_+,NA|132aa|up_3|NC_011831.1_4161382_4161778_-,NA|124aa|up_0|NC_011831.1_4163327_4163699_-,NA|55aa|down_0|NC_011831.1_4163931_4164096_+,NA|277aa|down_5|NC_011831.1_4168946_4169777_-,NA|343aa|down_6|NC_011831.1_4169781_4170810_-,NA|157aa|down_8|NC_011831.1_4171059_4171530_-	NA|300aa|up_9|NC_011831.1_4155685_4156585_+	pfam00480, ROK, ROK family	NA|561aa|up_8|NC_011831.1_4157203_4158886_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|91aa|up_7|NC_011831.1_4158895_4159168_+	NA	NA|43aa|up_6|NC_011831.1_4159298_4159427_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|88aa|up_5|NC_011831.1_4159443_4159707_+	NA	NA|405aa|up_4|NC_011831.1_4160017_4161232_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|132aa|up_3|NC_011831.1_4161382_4161778_-	NA	NA|199aa|up_2|NC_011831.1_4161881_4162478_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|191aa|up_1|NC_011831.1_4162686_4163259_-	pfam04314, PCuAC, Copper chaperone PCu(A)C	NA|124aa|up_0|NC_011831.1_4163327_4163699_-	NA	NA|55aa|down_0|NC_011831.1_4163931_4164096_+	NA	NA|392aa|down_1|NC_011831.1_4164931_4166107_-	COG3375, COG3375, Uncharacterized conserved protein [Function unknown]	NA|131aa|down_2|NC_011831.1_4166140_4166533_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|576aa|down_3|NC_011831.1_4166677_4168405_-	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|177aa|down_4|NC_011831.1_4168419_4168950_-	pfam07202, Tcp10_C, T-complex protein 10 C-terminus	NA|277aa|down_5|NC_011831.1_4168946_4169777_-	NA	NA|343aa|down_6|NC_011831.1_4169781_4170810_-	NA	NA|110aa|down_7|NC_011831.1_4170806_4171136_-	pfam09490, CbtA, Probable cobalt transporter subunit (CbtA)	NA|157aa|down_8|NC_011831.1_4171059_4171530_-	NA	NA|157aa|down_9|NC_011831.1_4171655_4172126_-	pfam08818, DUF1801, Domain of unknown function (DU1801)
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	37	4194733-4201805	6,32,6	PILER-CR,CRISPRCasFinder,CRT	no	csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas6,cas1,cas2	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Type III-A	CTTCAAAACACCAAAATCCCCGTGAGGGGATTGAAA,CTTCAAAACACCAAAATCCCCGTGAGGGGATTGAAAC,CTTCAAAACACCAAAATCCCCGTGAGGGGATTGAAA	36,37,36	0	0	NA	NA	NA:NA:NA	90,91,91	91	TypeIII-A	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	csx1|479aa|up_3|NC_011831.1_4190890_4192327_+,NA|182aa|down_6|NC_011831.1_4215032_4215578_+	NA|512aa|up_9|NC_011831.1_4181525_4183061_+	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	csm2gr11|152aa|up_8|NC_011831.1_4185536_4185992_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|271aa|up_7|NC_011831.1_4186011_4186824_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|364aa|up_6|NC_011831.1_4186828_4187920_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|472aa|up_5|NC_011831.1_4187981_4189397_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csx1|492aa|up_4|NC_011831.1_4189410_4190886_+	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|479aa|up_3|NC_011831.1_4190890_4192327_+	NA	cas6|287aa|up_2|NC_011831.1_4192429_4193290_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas1|340aa|up_1|NC_011831.1_4193267_4194287_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|94aa|up_0|NC_011831.1_4194302_4194584_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|217aa|down_0|NC_011831.1_4204616_4205267_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|510aa|down_1|NC_011831.1_4205325_4206855_-	PRK05326, PRK05326, potassium/proton antiporter	NA|578aa|down_2|NC_011831.1_4208908_4210642_-	PRK11269, PRK11269, glyoxylate carboligase; Provisional	NA|292aa|down_3|NC_011831.1_4210694_4211570_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|274aa|down_4|NC_011831.1_4211607_4212429_-	TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase	NA|768aa|down_5|NC_011831.1_4212745_4215049_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|182aa|down_6|NC_011831.1_4215032_4215578_+	NA	NA|325aa|down_7|NC_011831.1_4216517_4217492_-	COG1899, DYS1, Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]	NA|94aa|down_8|NC_011831.1_4218314_4218596_+	pfam13937, DUF4212, Domain of unknown function (DUF4212)	NA|720aa|down_9|NC_011831.1_4218629_4220789_+	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	38	4254645-4254733	33	CRISPRCasFinder	no		WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Orphan	CCCCGATAGGGTAGGTGATTGCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|464aa|up_2|NC_011831.1_4251269_4252661_+,NA|173aa|down_2|NC_011831.1_4257234_4257753_-,NA|57aa|down_7|NC_011831.1_4263788_4263959_+	NA|430aa|up_9|NC_011831.1_4242273_4243563_-	COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]	NA|545aa|up_8|NC_011831.1_4243559_4245194_-	TIGR01278, DPOR_BchB, light-independent protochlorophyllide reductase, B subunit	NA|426aa|up_7|NC_011831.1_4245247_4246525_-	TIGR01279, DPOR_bchN, light-independent protochlorophyllide reductase, N subunit	NA|180aa|up_6|NC_011831.1_4246994_4247534_-	pfam12773, DZR, Double zinc ribbon	NA|428aa|up_5|NC_011831.1_4247643_4248927_-	cd13586, PBP2_Maltose_binding_like, The periplasmic-binding component of ABC transport systems specific for maltose and related polysaccharides; possess type 2 periplasmic binding fold	NA|164aa|up_4|NC_011831.1_4248961_4249453_-	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional	NA|272aa|up_3|NC_011831.1_4250207_4251023_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|464aa|up_2|NC_011831.1_4251269_4252661_+	NA	NA|326aa|up_1|NC_011831.1_4252889_4253867_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|85aa|up_0|NC_011831.1_4254385_4254640_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|609aa|down_0|NC_011831.1_4254937_4256764_-	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|144aa|down_1|NC_011831.1_4256787_4257219_-	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|173aa|down_2|NC_011831.1_4257234_4257753_-	NA	NA|349aa|down_3|NC_011831.1_4257762_4258809_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|804aa|down_4|NC_011831.1_4258813_4261225_-	TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase	NA|371aa|down_5|NC_011831.1_4261221_4262334_-	cd08230, glucose_DH, Glucose dehydrogenase	NA|431aa|down_6|NC_011831.1_4262352_4263645_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|57aa|down_7|NC_011831.1_4263788_4263959_+	NA	NA|197aa|down_8|NC_011831.1_4264529_4265120_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|175aa|down_9|NC_011831.1_4265291_4265816_-	pfam06210, DUF1003, Protein of unknown function (DUF1003)
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	39	4433996-4434412	7	CRT	no	cas3	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Unclear	GTTGCAGGCGGANGAGCCGGC	21	9	71	4434017-4434043|4434017-4434043|4434017-4434043|4434017-4434043|4434017-4434043|4434017-4434043|4434017-4434043|4434017-4434043|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434065-4434091|4434113-4434130|4434113-4434130|4434113-4434130|4434113-4434130|4434152-4434178|4434152-4434178|4434152-4434178|4434152-4434178|4434152-4434178|4434152-4434178|4434152-4434178|4434152-4434178|4434200-4434217|4434200-4434217|4434200-4434217|4434200-4434217|4434239-4434265|4434239-4434265|4434239-4434265|4434239-4434265|4434239-4434265|4434239-4434265|4434239-4434265|4434239-4434265|4434287-4434304|4434287-4434304|4434287-4434304|4434287-4434304|4434326-4434352|4434326-4434352|4434326-4434352|4434326-4434352|4434326-4434352|4434326-4434352|4434326-4434352|4434326-4434352|4434374-4434391|4434374-4434391|4434374-4434391|4434374-4434391	NC_011831.1_4434578-4434604|NC_011831.1_4434665-4434691|NC_011831.1_4434809-4434835|NC_011831.1_4435205-4435231|NC_011831.1_4435733-4435759|NC_011831.1_4436309-4436335|NC_011831.1_4434896-4434922|NC_011831.1_4434944-4434970|NC_011831.1_4434761-4434787|NC_011831.1_4434992-4435018|NC_011831.1_4435685-4435711|NC_011831.1_4435877-4435903|NC_011831.1_4436069-4436095|NC_011831.1_4436117-4436143|NC_011831.1_4436261-4436287|NC_011831.1_4434713-4434739|NC_011831.1_4435301-4435327|NC_011831.1_4435397-4435423|NC_011831.1_4435445-4435471|NC_011831.1_4435493-4435519|NC_011831.1_4435589-4435615|NC_011831.1_4435637-4435663|NC_011831.1_4435781-4435807|NC_011831.1_4435829-4435855|NC_011831.1_4435925-4435951|NC_011831.1_4435973-4435999|NC_011831.1_4436021-4436047|NC_011831.1_4436165-4436191|NC_011831.1_4436357-4436383|NC_011831.1_4436405-4436431|NC_011831.1_4436453-4436479|NC_011831.1_4433978-4433995|NC_011831.1_4434539-4434556|NC_011831.1_4434626-4434643|NC_011831.1_4435166-4435183|NC_011831.1_4434578-4434604|NC_011831.1_4434665-4434691|NC_011831.1_4434809-4434835|NC_011831.1_4435205-4435231|NC_011831.1_4435733-4435759|NC_011831.1_4436309-4436335|NC_011831.1_4434896-4434922|NC_011831.1_4434944-4434970|NC_011831.1_4433978-4433995|NC_011831.1_4434539-4434556|NC_011831.1_4434626-4434643|NC_011831.1_4435166-4435183|NC_011831.1_4434578-4434604|NC_011831.1_4434665-4434691|NC_011831.1_4434809-4434835|NC_011831.1_4435205-4435231|NC_011831.1_4435733-4435759|NC_011831.1_4436309-4436335|NC_011831.1_4434896-4434922|NC_011831.1_4434944-4434970|NC_011831.1_4433978-4433995|NC_011831.1_4434539-4434556|NC_011831.1_4434626-4434643|NC_011831.1_4435166-4435183|NC_011831.1_4434578-4434604|NC_011831.1_4434665-4434691|NC_011831.1_4434809-4434835|NC_011831.1_4435205-4435231|NC_011831.1_4435733-4435759|NC_011831.1_4436309-4436335|NC_011831.1_4434896-4434922|NC_011831.1_4434944-4434970|NC_011831.1_4433978-4433995|NC_011831.1_4434539-4434556|NC_011831.1_4434626-4434643|NC_011831.1_4435166-4435183	NA	9	9	Unclear	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|62aa|up_2|NC_011831.1_4431035_4431221_+,NA|265aa|up_1|NC_011831.1_4431438_4432233_+,NA|223aa|up_0|NC_011831.1_4432237_4432906_+,NA|216aa|down_0|NC_011831.1_4437787_4438435_+,NA|93aa|down_9|NC_011831.1_4448189_4448468_+	NA|268aa|up_9|NC_011831.1_4423322_4424126_+	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|62aa|up_8|NC_011831.1_4424414_4424600_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|285aa|up_7|NC_011831.1_4424701_4425556_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|863aa|up_6|NC_011831.1_4425552_4428141_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|371aa|up_5|NC_011831.1_4428189_4429302_+	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]	NA|357aa|up_4|NC_011831.1_4429417_4430488_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|163aa|up_3|NC_011831.1_4430530_4431019_+	cd08862, SRPBCC_Smu440-like, Ligand-binding SRPBCC domain of Streptococcus mutans Smu	NA|62aa|up_2|NC_011831.1_4431035_4431221_+	NA	NA|265aa|up_1|NC_011831.1_4431438_4432233_+	NA	NA|223aa|up_0|NC_011831.1_4432237_4432906_+	NA	NA|216aa|down_0|NC_011831.1_4437787_4438435_+	NA	NA|611aa|down_1|NC_011831.1_4438444_4440277_+	pfam13941, MutL, MutL protein	NA|345aa|down_2|NC_011831.1_4440496_4441531_-	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	NA|606aa|down_3|NC_011831.1_4441621_4443439_-	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|248aa|down_4|NC_011831.1_4443597_4444341_-	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases	NA|300aa|down_5|NC_011831.1_4444421_4445321_-	PRK02308, uvsE, putative UV damage endonuclease; Provisional	NA|415aa|down_6|NC_011831.1_4445438_4446683_-	sd00006, TPR, Tetratricopeptide repeat	NA|251aa|down_7|NC_011831.1_4446757_4447510_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|200aa|down_8|NC_011831.1_4447578_4448178_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|93aa|down_9|NC_011831.1_4448189_4448468_+	NA
GCF_000021945.1_ASM2194v1	NC_011831	Chloroflexus aggregans DSM 9485, complete genome	40	4440328-4440457	34	CRISPRCasFinder	no	cas3	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	Unclear	ACGGATAGAACGGATAGCCACGGATGGTTCAGAATGGCGCGAT	43	0	0	NA	NA	NA	1	1	Unclear	WYL,c2c9_V-U4,csa3,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b2,DEDDh,csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,csx15,Cas14u_CAS-V,DinG,cas14j,c2c10_CAS-V-U3,csm2gr11,csm4gr5,csm5gr7,cmr3gr5,cmr5gr11,cmr6gr7,cmr4gr7	NA|62aa|up_5|NC_011831.1_4431035_4431221_+,NA|265aa|up_4|NC_011831.1_4431438_4432233_+,NA|223aa|up_3|NC_011831.1_4432237_4432906_+,NA|216aa|up_1|NC_011831.1_4437787_4438435_+,NA|93aa|down_7|NC_011831.1_4448189_4448468_+,NA|58aa|down_8|NC_011831.1_4448539_4448713_+	cas3|863aa|up_9|NC_011831.1_4425552_4428141_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|371aa|up_8|NC_011831.1_4428189_4429302_+	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]	NA|357aa|up_7|NC_011831.1_4429417_4430488_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|163aa|up_6|NC_011831.1_4430530_4431019_+	cd08862, SRPBCC_Smu440-like, Ligand-binding SRPBCC domain of Streptococcus mutans Smu	NA|62aa|up_5|NC_011831.1_4431035_4431221_+	NA	NA|265aa|up_4|NC_011831.1_4431438_4432233_+	NA	NA|223aa|up_3|NC_011831.1_4432237_4432906_+	NA	NA|1617aa|up_2|NC_011831.1_4432937_4437788_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|216aa|up_1|NC_011831.1_4437787_4438435_+	NA	NA|611aa|up_0|NC_011831.1_4438444_4440277_+	pfam13941, MutL, MutL protein	NA|345aa|down_0|NC_011831.1_4440496_4441531_-	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	NA|606aa|down_1|NC_011831.1_4441621_4443439_-	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|248aa|down_2|NC_011831.1_4443597_4444341_-	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases	NA|300aa|down_3|NC_011831.1_4444421_4445321_-	PRK02308, uvsE, putative UV damage endonuclease; Provisional	NA|415aa|down_4|NC_011831.1_4445438_4446683_-	sd00006, TPR, Tetratricopeptide repeat	NA|251aa|down_5|NC_011831.1_4446757_4447510_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|200aa|down_6|NC_011831.1_4447578_4448178_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|93aa|down_7|NC_011831.1_4448189_4448468_+	NA	NA|58aa|down_8|NC_011831.1_4448539_4448713_+	NA	NA|392aa|down_9|NC_011831.1_4448825_4450001_+	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated
