assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000021885.1_ASM2188v1	NC_011852	Glaesserella parasuis SH0165, complete sequence	1	225173-225888	1	CRISPRCasFinder	no		DEDDh,WYL,PD-DExK,DinG,cas3,cas2	Orphan	CCAGGACAAGCGGGTCCAGCAGGACCACGAGG	32	10	70	225205-225244|225277-225325|225277-225325|225277-225325|225358-225424|225358-225424|225358-225424|225457-225514|225457-225514|225547-225577|225547-225577|225547-225577|225547-225577|225547-225577|225547-225577|225547-225577|225547-225577|225547-225577|225547-225577|225547-225577|225610-225640|225610-225640|225610-225640|225610-225640|225610-225640|225610-225640|225610-225640|225610-225640|225610-225640|225610-225640|225610-225640|225673-225694|225673-225694|225673-225694|225673-225694|225673-225694|225673-225694|225673-225694|225727-225748|225727-225748|225727-225748|225727-225748|225727-225748|225727-225748|225727-225748|225781-225802|225781-225802|225781-225802|225781-225802|225781-225802|225781-225802|225781-225802|225781-225802|225781-225802|225781-225802|225781-225802|225781-225802|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856|225835-225856	NC_011852.1_6762-6723|NC_011852.1_6690-6642|NC_011852.1_2021154-2021106|NC_011852.1_483903-483855|NC_011852.1_6609-6543|NC_011852.1_6861-6795|NC_011852.1_225106-225172|NC_011852.1_6510-6453|NC_011852.1_700446-700389|NC_011852.1_6357-6327|NC_011852.1_6420-6390|NC_011852.1_700356-700326|NC_011852.1_406005-406035|NC_011852.1_539708-539678|NC_011852.1_540671-540641|NC_011852.1_564467-564437|NC_011852.1_940607-940637|NC_011852.1_483993-483963|NC_011852.1_539870-539840|NC_011852.1_1493118-1493148|NC_011852.1_6357-6327|NC_011852.1_6420-6390|NC_011852.1_700356-700326|NC_011852.1_406005-406035|NC_011852.1_539708-539678|NC_011852.1_540671-540641|NC_011852.1_564467-564437|NC_011852.1_940607-940637|NC_011852.1_483993-483963|NC_011852.1_539870-539840|NC_011852.1_1493118-1493148|NC_011852.1_6294-6273|NC_011852.1_6474-6453|NC_011852.1_406059-406080|NC_011852.1_540617-540596|NC_011852.1_700410-700389|NC_011852.1_1491993-1492014|NC_011852.1_484092-484071|NC_011852.1_483822-483801|NC_011852.1_6213-6192|NC_011852.1_700230-700209|NC_011852.1_700257-700236|NC_011852.1_1727717-1727738|NC_011852.1_1727771-1727792|NC_011852.1_2020794-2020773|NC_011852.1_406239-406260|NC_011852.1_483759-483738|NC_011852.1_541400-541379|NC_011852.1_1727762-1727783|NC_011852.1_2020803-2020782|NC_011852.1_6249-6228|NC_011852.1_225880-225901|NC_011852.1_700239-700218|NC_011852.1_700266-700245|NC_011852.1_940697-940718|NC_011852.1_1727708-1727729|NC_011852.1_1727735-1727756|NC_011852.1_6267-6246|NC_011852.1_405645-405666|NC_011852.1_940328-940349|NC_011852.1_1490967-1490988|NC_011852.1_406086-406107|NC_011852.1_541193-541172|NC_011852.1_700257-700236|NC_011852.1_700383-700362|NC_011852.1_1492947-1492968|NC_011852.1_1727321-1727342|NC_011852.1_1727663-1727684|NC_011852.1_1727717-1727738|NC_011852.1_2021073-2021052	NA	10	10	Orphan	DEDDh,WYL,PD-DExK,DinG,cas3,cas2	NA|87aa|up_1|NC_011852.1_221787_222048_+,NA|126aa|up_0|NC_011852.1_222040_222418_+,NA	NA|377aa|up_9|NC_011852.1_210131_211262_-	TIGR02815, agaS_fam, putative sugar isomerase, AgaS family	NA|254aa|up_8|NC_011852.1_211313_212075_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|306aa|up_7|NC_011852.1_212415_213333_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|688aa|up_6|NC_011852.1_213586_215650_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|352aa|up_5|NC_011852.1_215633_216689_+	PRK11432, fbpC, ferric ABC transporter ATP-binding protein	NA|154aa|up_4|NC_011852.1_217060_217522_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|511aa|up_3|NC_011852.1_217536_219069_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|854aa|up_2|NC_011852.1_219086_221648_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|87aa|up_1|NC_011852.1_221787_222048_+	NA	NA|126aa|up_0|NC_011852.1_222040_222418_+	NA	NA|297aa|down_0|NC_011852.1_227628_228519_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|871aa|down_1|NC_011852.1_228656_231269_+	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|579aa|down_2|NC_011852.1_231315_233052_-	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|75aa|down_3|NC_011852.1_233053_233278_-	PRK13689, PRK13689, hypothetical protein; Provisional	NA|234aa|down_4|NC_011852.1_233481_234183_-	PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	NA|484aa|down_5|NC_011852.1_235104_236556_+	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional	NA|454aa|down_6|NC_011852.1_236578_237940_+	PRK09451, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|322aa|down_7|NC_011852.1_238231_239197_+	PRK09455, rseB, anti-sigma E factor; Provisional	NA|143aa|down_8|NC_011852.1_239193_239622_+	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC	NA|567aa|down_9|NC_011852.1_239632_241333_+	PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase FadD
GCF_000021885.1_ASM2188v1	NC_011852	Glaesserella parasuis SH0165, complete sequence	2	336328-336548	2	CRISPRCasFinder	no	WYL	DEDDh,WYL,PD-DExK,DinG,cas3,cas2	Unclear	CTTCATTTCTTCTGTTGGATTTT	23	0	0	NA	NA	NA	3	3	Orphan	DEDDh,WYL,PD-DExK,DinG,cas3,cas2	NA|73aa|up_6|NC_011852.1_331233_331452_-,NA|124aa|up_5|NC_011852.1_331504_331876_-,NA|129aa|up_1|NC_011852.1_334939_335326_-,NA|113aa|down_0|NC_011852.1_336628_336967_-	NA|211aa|up_9|NC_011852.1_327061_327694_+	pfam08942, DUF1919, Domain of unknown function (DUF1919)	NA|524aa|up_8|NC_011852.1_328461_330033_+	PRK00074, guaA, GMP synthase; Reviewed	NA|157aa|up_7|NC_011852.1_330167_330638_+	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain	NA|73aa|up_6|NC_011852.1_331233_331452_-	NA	NA|124aa|up_5|NC_011852.1_331504_331876_-	NA	NA|86aa|up_4|NC_011852.1_331900_332158_-	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|549aa|up_3|NC_011852.1_332154_333801_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|359aa|up_2|NC_011852.1_333847_334924_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|129aa|up_1|NC_011852.1_334939_335326_-	NA	NA|238aa|up_0|NC_011852.1_335352_336066_-	COG4735, COG4735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|113aa|down_0|NC_011852.1_336628_336967_-	NA	WYL|296aa|down_1|NC_011852.1_336975_337863_-	pfam13280, WYL, WYL domain	NA|115aa|down_2|NC_011852.1_338080_338425_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|268aa|down_3|NC_011852.1_338465_339269_-	PRK11756, PRK11756, exonuclease III; Provisional	NA|459aa|down_4|NC_011852.1_339384_340761_-	COG2056, COG2056, Predicted permease [General function prediction only]	NA|317aa|down_5|NC_011852.1_341068_342019_-	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|189aa|down_6|NC_011852.1_342199_342766_+	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|146aa|down_7|NC_011852.1_342766_343204_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|943aa|down_8|NC_011852.1_343395_346224_+	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|280aa|down_9|NC_011852.1_346240_347080_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional
GCF_000021885.1_ASM2188v1	NC_011852	Glaesserella parasuis SH0165, complete sequence	3	576627-576748	3	CRISPRCasFinder	no		DEDDh,WYL,PD-DExK,DinG,cas3,cas2	Orphan	TTCATCATATGATCTTTTTTCAT	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,PD-DExK,DinG,cas3,cas2	NA,NA|173aa|down_9|NC_011852.1_582395_582914_+	NA|1178aa|up_9|NC_011852.1_563305_566839_-	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|199aa|up_8|NC_011852.1_567451_568048_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|341aa|up_7|NC_011852.1_568058_569081_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|315aa|up_6|NC_011852.1_569194_570139_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|177aa|up_5|NC_011852.1_570225_570756_+	PRK04946, PRK04946, endonuclease SmrB	NA|406aa|up_4|NC_011852.1_570897_572115_-	TIGR00837, Tyrosine-specific_transport_protein, aromatic amino acid transport protein	NA|405aa|up_3|NC_011852.1_572262_573477_-	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|160aa|up_2|NC_011852.1_574272_574752_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|217aa|up_1|NC_011852.1_574769_575420_-	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region	NA|357aa|up_0|NC_011852.1_575421_576492_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|191aa|down_0|NC_011852.1_577066_577639_+	PRK12530, PRK12530, RNA polymerase sigma factor; Provisional	NA|62aa|down_1|NC_011852.1_577635_577821_+	pfam13490, zf-HC2, Putative zinc-finger	NA|99aa|down_2|NC_011852.1_578932_579229_-	PHA02535, P, terminase ATPase subunit; Provisional	NA|272aa|down_3|NC_011852.1_579396_580212_+	pfam05929, Phage_GPO, Phage capsid scaffolding protein (GPO) serine peptidase	NA|68aa|down_4|NC_011852.1_580224_580428_+	pfam05125, Phage_cap_P2, Phage major capsid protein, P2 family	NA|218aa|down_5|NC_011852.1_580427_581081_+	PHA02537, M, terminase endonuclease subunit; Provisional	NA|46aa|down_6|NC_011852.1_581115_581253_+	pfam16080, Phage_holin_2_3, Bacteriophage holin family HP1	NA|175aa|down_7|NC_011852.1_581236_581761_+	cd16901, lyz_P1, P1 lysozyme Lyz-like proteins	NA|156aa|down_8|NC_011852.1_581745_582213_+	TIGR03495, Probable_spanin_inner_membrane_subunit, phage lysis regulatory protein, LysB family	NA|173aa|down_9|NC_011852.1_582395_582914_+	NA
GCF_000021885.1_ASM2188v1	NC_011852	Glaesserella parasuis SH0165, complete sequence	4	593800-593898	4	CRISPRCasFinder	no		DEDDh,WYL,PD-DExK,DinG,cas3,cas2	Orphan	AATGGCGGTTTTGCTTCTTCCCGAATGTCG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,PD-DExK,DinG,cas3,cas2	NA|181aa|up_9|NC_011852.1_587549_588092_+,NA|146aa|up_7|NC_011852.1_589603_590041_+,NA|126aa|up_4|NC_011852.1_590938_591316_-,NA|66aa|up_1|NC_011852.1_592490_592688_-,NA|145aa|down_3|NC_011852.1_596298_596733_+,NA|82aa|down_7|NC_011852.1_598293_598539_+,NA|96aa|down_8|NC_011852.1_598816_599104_+	NA|181aa|up_9|NC_011852.1_587549_588092_+	NA	NA|141aa|up_8|NC_011852.1_588084_588507_+	pfam13957, YafO_toxin, Toxin YafO, type II toxin-antitoxin system	NA|146aa|up_7|NC_011852.1_589603_590041_+	NA	NA|62aa|up_6|NC_011852.1_590264_590450_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|146aa|up_5|NC_011852.1_590479_590917_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|126aa|up_4|NC_011852.1_590938_591316_-	NA	NA|190aa|up_3|NC_011852.1_591312_591882_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|143aa|up_2|NC_011852.1_592026_592455_-	pfam05772, NinB, NinB protein	NA|66aa|up_1|NC_011852.1_592490_592688_-	NA	NA|224aa|up_0|NC_011852.1_592710_593382_-	pfam06992, Phage_lambda_P, Replication protein P	NA|261aa|down_0|NC_011852.1_594208_594991_-	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|69aa|down_1|NC_011852.1_595270_595477_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|218aa|down_2|NC_011852.1_595612_596266_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|145aa|down_3|NC_011852.1_596298_596733_+	NA	NA|159aa|down_4|NC_011852.1_596725_597202_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|61aa|down_5|NC_011852.1_597319_597502_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|140aa|down_6|NC_011852.1_597541_597961_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|82aa|down_7|NC_011852.1_598293_598539_+	NA	NA|96aa|down_8|NC_011852.1_598816_599104_+	NA	NA|57aa|down_9|NC_011852.1_599130_599301_-	pfam07411, DUF1508, Domain of unknown function (DUF1508)
GCF_000021885.1_ASM2188v1	NC_011852	Glaesserella parasuis SH0165, complete sequence	5	638392-638490	5	CRISPRCasFinder	no		DEDDh,WYL,PD-DExK,DinG,cas3,cas2	Orphan	AATGGCGGTTTTGCTTCTTCCCGAATGTCG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,PD-DExK,DinG,cas3,cas2	NA|92aa|up_8|NC_011852.1_633586_633862_-,NA|188aa|up_7|NC_011852.1_633975_634539_+,NA|73aa|up_5|NC_011852.1_635303_635522_+,NA|126aa|up_4|NC_011852.1_635530_635908_-,NA|66aa|up_1|NC_011852.1_637082_637280_-,NA|149aa|down_7|NC_011852.1_644805_645252_+,NA|74aa|down_9|NC_011852.1_645881_646103_+	NA|182aa|up_9|NC_011852.1_633066_633612_-	cd16901, lyz_P1, P1 lysozyme Lyz-like proteins	NA|92aa|up_8|NC_011852.1_633586_633862_-	NA	NA|188aa|up_7|NC_011852.1_633975_634539_+	NA	NA|59aa|up_6|NC_011852.1_634830_635007_-	COG1792, MreC, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|73aa|up_5|NC_011852.1_635303_635522_+	NA	NA|126aa|up_4|NC_011852.1_635530_635908_-	NA	NA|190aa|up_3|NC_011852.1_635904_636474_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|143aa|up_2|NC_011852.1_636618_637047_-	pfam05772, NinB, NinB protein	NA|66aa|up_1|NC_011852.1_637082_637280_-	NA	NA|224aa|up_0|NC_011852.1_637302_637974_-	pfam06992, Phage_lambda_P, Replication protein P	NA|261aa|down_0|NC_011852.1_638800_639583_-	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|67aa|down_1|NC_011852.1_639862_640063_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|224aa|down_2|NC_011852.1_640189_640861_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|283aa|down_3|NC_011852.1_640941_641790_+	pfam04383, KilA-N, KilA-N domain	NA|548aa|down_4|NC_011852.1_641923_643567_+	COG1106, COG1106, Predicted ATPases [General function prediction only]	NA|272aa|down_5|NC_011852.1_643611_644427_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|97aa|down_6|NC_011852.1_644455_644746_-	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein	NA|149aa|down_7|NC_011852.1_644805_645252_+	NA	NA|57aa|down_8|NC_011852.1_645696_645867_-	pfam07411, DUF1508, Domain of unknown function (DUF1508)	NA|74aa|down_9|NC_011852.1_645881_646103_+	NA
