assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000021385.1_ASM2138v1	NC_011769	Desulfovibrio vulgaris str. 'Miyazaki F', complete genome	1	241915-242071	1	CRISPRCasFinder	no		DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	Orphan	GATGAAGCGACTTCTGGCCATCGACGACGAACCCGGGCACCGCCTGATGGTCC	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	NA|278aa|up_7|NC_011769.1_222838_223672_+,NA	NA|351aa|up_9|NC_011769.1_219856_220909_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|512aa|up_8|NC_011769.1_221146_222682_-	cd01335, Radical_SAM, Radical SAM superfamily	NA|278aa|up_7|NC_011769.1_222838_223672_+	NA	NA|326aa|up_6|NC_011769.1_224324_225302_-	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|430aa|up_5|NC_011769.1_225566_226856_+	PRK13352, PRK13352, phosphomethylpyrimidine synthase ThiC	NA|763aa|up_4|NC_011769.1_227130_229419_-	cd01948, EAL, EAL domain	NA|323aa|up_3|NC_011769.1_229449_230418_-	cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|402aa|up_2|NC_011769.1_231138_232344_+	cd19978, PBP1_ABC_ligand_binding-like, periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions	NA|1077aa|up_1|NC_011769.1_232340_235571_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|1216aa|up_0|NC_011769.1_235669_239317_+	pfam13502, AsmA_2, AsmA-like C-terminal region	NA|194aa|down_0|NC_011769.1_243623_244205_+	pfam14559, TPR_19, Tetratricopeptide repeat	NA|122aa|down_1|NC_011769.1_244494_244860_+	pfam01627, Hpt, Hpt domain	NA|209aa|down_2|NC_011769.1_245543_246170_-	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|194aa|down_3|NC_011769.1_246532_247114_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|350aa|down_4|NC_011769.1_247201_248251_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|474aa|down_5|NC_011769.1_248394_249816_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|482aa|down_6|NC_011769.1_249805_251251_-	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|444aa|down_7|NC_011769.1_251247_252579_-	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|128aa|down_8|NC_011769.1_252595_252979_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|138aa|down_9|NC_011769.1_253294_253708_-	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC
GCF_000021385.1_ASM2138v1	NC_011769	Desulfovibrio vulgaris str. 'Miyazaki F', complete genome	2	1907947-1908051	2	CRISPRCasFinder	no		DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	Orphan	GCGAGCGGCGCTTGCCGCAGGGTCCGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	NA|178aa|up_9|NC_011769.1_1891065_1891599_-,NA|117aa|down_0|NC_011769.1_1908196_1908547_-,NA|202aa|down_1|NC_011769.1_1908552_1909158_-,NA|261aa|down_5|NC_011769.1_1914399_1915182_-,NA|233aa|down_6|NC_011769.1_1915394_1916093_-,NA|86aa|down_7|NC_011769.1_1916223_1916481_-	NA|178aa|up_9|NC_011769.1_1891065_1891599_-	NA	NA|397aa|up_8|NC_011769.1_1891929_1893120_-	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|646aa|up_7|NC_011769.1_1893515_1895453_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|382aa|up_6|NC_011769.1_1896368_1897514_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|522aa|up_5|NC_011769.1_1897637_1899203_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|440aa|up_4|NC_011769.1_1899557_1900877_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|455aa|up_3|NC_011769.1_1901069_1902434_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|222aa|up_2|NC_011769.1_1902470_1903136_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|293aa|up_1|NC_011769.1_1903358_1904237_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|218aa|up_0|NC_011769.1_1904583_1905237_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|117aa|down_0|NC_011769.1_1908196_1908547_-	NA	NA|202aa|down_1|NC_011769.1_1908552_1909158_-	NA	NA|586aa|down_2|NC_011769.1_1909311_1911069_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|260aa|down_3|NC_011769.1_1911303_1912083_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|610aa|down_4|NC_011769.1_1912567_1914397_-	cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain	NA|261aa|down_5|NC_011769.1_1914399_1915182_-	NA	NA|233aa|down_6|NC_011769.1_1915394_1916093_-	NA	NA|86aa|down_7|NC_011769.1_1916223_1916481_-	NA	NA|438aa|down_8|NC_011769.1_1917012_1918326_+	TIGR02064, Sulfite_reductase_dissimilatory-type_subunit_alpha, sulfite reductase, dissimilatory-type alpha subunit	NA|382aa|down_9|NC_011769.1_1918344_1919490_+	TIGR02066, Sulfite_reductase_dissimilatory-type_subunit_beta, sulfite reductase, dissimilatory-type beta subunit
GCF_000021385.1_ASM2138v1	NC_011769	Desulfovibrio vulgaris str. 'Miyazaki F', complete genome	3	2286218-2286326	3	CRISPRCasFinder	no		DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	Orphan	GATCGGGCGCGCATGCCGCGCCGCG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	NA|126aa|up_7|NC_011769.1_2270194_2270572_-,NA|211aa|up_6|NC_011769.1_2270875_2271508_-,NA	NA|311aa|up_9|NC_011769.1_2268426_2269359_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|259aa|up_8|NC_011769.1_2269361_2270138_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|126aa|up_7|NC_011769.1_2270194_2270572_-	NA	NA|211aa|up_6|NC_011769.1_2270875_2271508_-	NA	NA|1192aa|up_5|NC_011769.1_2272084_2275660_+	PRK13837, PRK13837, two-component system VirA-like sensor kinase	NA|500aa|up_4|NC_011769.1_2275665_2277165_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|1216aa|up_3|NC_011769.1_2277835_2281483_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|570aa|up_2|NC_011769.1_2281605_2283315_+	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|462aa|up_1|NC_011769.1_2283485_2284871_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|422aa|up_0|NC_011769.1_2284902_2286168_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|705aa|down_0|NC_011769.1_2286533_2288648_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|405aa|down_1|NC_011769.1_2288797_2290012_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|354aa|down_2|NC_011769.1_2290168_2291230_+	COG0857, Pta, BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]	NA|210aa|down_3|NC_011769.1_2291366_2291996_+	pfam02589, LUD_dom, LUD domain	NA|717aa|down_4|NC_011769.1_2292000_2294151_+	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|608aa|down_5|NC_011769.1_2294386_2296210_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|380aa|down_6|NC_011769.1_2296433_2297573_-	pfam04015, DUF362, Domain of unknown function (DUF362)	NA|343aa|down_7|NC_011769.1_2297569_2298598_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|409aa|down_8|NC_011769.1_2298999_2300226_-	pfam03069, FmdA_AmdA, Acetamidase/Formamidase family	NA|451aa|down_9|NC_011769.1_2300699_2302052_+	TIGR04311, Radical_SAM_domain_protein, putative metalloenzyme radical SAM/SPASM domain maturase
GCF_000021385.1_ASM2138v1	NC_011769	Desulfovibrio vulgaris str. 'Miyazaki F', complete genome	4	2444693-2448151	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	Type I-C, Type I-U?,Type I-U	GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC,GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC,GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	50,51,52	52	TypeI-C,TypeI-U?,TypeI-U	DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	NA|165aa|up_7|NC_011769.1_2435370_2435865_+,NA|106aa|down_2|NC_011769.1_2449370_2449688_+,NA|240aa|down_7|NC_011769.1_2457072_2457792_+	NA|790aa|up_9|NC_011769.1_2430283_2432653_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|68aa|up_8|NC_011769.1_2434692_2434896_-	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]	NA|165aa|up_7|NC_011769.1_2435370_2435865_+	NA	cas3|741aa|up_6|NC_011769.1_2436552_2438775_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|222aa|up_5|NC_011769.1_2438874_2439540_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|630aa|up_4|NC_011769.1_2439536_2441426_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|318aa|up_3|NC_011769.1_2441450_2442404_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|256aa|up_2|NC_011769.1_2442414_2443182_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|NC_011769.1_2443181_2444213_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_011769.1_2444215_2444506_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|66aa|down_0|NC_011769.1_2448256_2448454_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|85aa|down_1|NC_011769.1_2448842_2449097_+	pfam09098, Dehyd-heme_bind, Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding	NA|106aa|down_2|NC_011769.1_2449370_2449688_+	NA	NA|170aa|down_3|NC_011769.1_2450198_2450708_-	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|1059aa|down_4|NC_011769.1_2451195_2454372_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|258aa|down_5|NC_011769.1_2454442_2455216_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|375aa|down_6|NC_011769.1_2455946_2457071_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|240aa|down_7|NC_011769.1_2457072_2457792_+	NA	NA|229aa|down_8|NC_011769.1_2458199_2458886_+	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|919aa|down_9|NC_011769.1_2459259_2462016_-	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain
GCF_000021385.1_ASM2138v1	NC_011769	Desulfovibrio vulgaris str. 'Miyazaki F', complete genome	5	2874340-2874446	5	CRISPRCasFinder	no	csa3	DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	Type I-A	CGACGGGAATCATCCGAATGCCCCG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	NA,NA|218aa|down_9|NC_011769.1_2884468_2885122_+	NA|366aa|up_9|NC_011769.1_2862569_2863667_+	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|342aa|up_8|NC_011769.1_2863671_2864697_+	cd02197, HypE, HypE (Hydrogenase expression/formation protein)	NA|374aa|up_7|NC_011769.1_2866611_2867733_-	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|343aa|up_6|NC_011769.1_2868301_2869330_+	PRK15181, PRK15181, Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	csa3|123aa|up_5|NC_011769.1_2869586_2869955_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|331aa|up_4|NC_011769.1_2870590_2871583_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|187aa|up_3|NC_011769.1_2871814_2872375_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|137aa|up_2|NC_011769.1_2873034_2873445_+	PRK12621, flgB, flagellar basal body rod protein FlgB; Provisional	NA|146aa|up_1|NC_011769.1_2873444_2873882_+	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|111aa|up_0|NC_011769.1_2873901_2874234_+	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|540aa|down_0|NC_011769.1_2874550_2876170_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|339aa|down_1|NC_011769.1_2876138_2877155_+	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|255aa|down_2|NC_011769.1_2877141_2877906_+	PRK06937, PRK06937, HrpE/YscL family type III secretion apparatus protein	NA|458aa|down_3|NC_011769.1_2878000_2879374_+	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|205aa|down_4|NC_011769.1_2879623_2880238_-	cd03395, PAP2_like_4, PAP2_like_4 proteins	NA|301aa|down_5|NC_011769.1_2880397_2881300_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|249aa|down_6|NC_011769.1_2881457_2882204_-	cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|76aa|down_7|NC_011769.1_2882853_2883081_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|375aa|down_8|NC_011769.1_2883087_2884212_+	PRK14301, PRK14301, chaperone protein DnaJ; Provisional	NA|218aa|down_9|NC_011769.1_2884468_2885122_+	NA
GCF_000021385.1_ASM2138v1	NC_011769	Desulfovibrio vulgaris str. 'Miyazaki F', complete genome	6	3733535-3733674	6	CRISPRCasFinder	no		DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	Orphan	ACGGCGGGCCTCGCGGGCTCGGC	23	0	0	NA	NA	NA	3	3	Orphan	DEDDh,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	NA,NA|172aa|down_0|NC_011769.1_3734656_3735172_+,NA|185aa|down_4|NC_011769.1_3741346_3741901_+	NA|297aa|up_9|NC_011769.1_3722261_3723152_+	PRK12802, PRK12802, flagellin; Provisional	NA|212aa|up_8|NC_011769.1_3723374_3724010_+	COG3647, COG3647, Predicted membrane protein [Function unknown]	NA|208aa|up_7|NC_011769.1_3724328_3724952_+	pfam13023, HD_3, HD domain	NA|407aa|up_6|NC_011769.1_3725137_3726358_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|444aa|up_5|NC_011769.1_3726357_3727689_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|251aa|up_4|NC_011769.1_3727685_3728438_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|431aa|up_3|NC_011769.1_3728451_3729744_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|349aa|up_2|NC_011769.1_3730090_3731137_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|143aa|up_1|NC_011769.1_3731468_3731897_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|111aa|up_0|NC_011769.1_3731995_3732328_+	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|172aa|down_0|NC_011769.1_3734656_3735172_+	NA	NA|320aa|down_1|NC_011769.1_3735271_3736231_-	COG0496, SurE, Predicted acid phosphatase [General function prediction only]	NA|89aa|down_2|NC_011769.1_3740245_3740512_+	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|153aa|down_3|NC_011769.1_3740715_3741174_+	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|185aa|down_4|NC_011769.1_3741346_3741901_+	NA	NA|305aa|down_5|NC_011769.1_3742085_3743000_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|357aa|down_6|NC_011769.1_3743180_3744251_+	cd13587, PBP2_polyamine_2, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold	NA|282aa|down_7|NC_011769.1_3745882_3746728_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|287aa|down_8|NC_011769.1_3746724_3747585_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|304aa|down_9|NC_011769.1_3747859_3748771_+	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins
