The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011369	Rhizobium leguminosarum bv. trifolii WSM2304, complete sequence	4537948	1188556	1197620	4537948		Aeromonas_phage(14.29%)	9	NA	NA
WP_003587436.1|1188556_1189855_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.3	4.9e-98
WP_003547190.1|1189864_1190341_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_012557273.1|1190344_1191559_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.6	2.6e-32
WP_003587434.1|1191558_1192170_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.6	2.0e-17
WP_003587433.1|1192208_1193078_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.2	1.5e-95
WP_012557274.1|1193088_1193976_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_012557275.1|1193978_1195034_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.5	6.3e-96
WP_012557276.1|1195040_1195619_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	45.6	7.1e-33
WP_012557277.1|1195643_1197620_-	hypothetical protein	NA	Q6XM29	Feldmannia_irregularis_virus	31.3	3.7e-20
>prophage 2
NC_011369	Rhizobium leguminosarum bv. trifolii WSM2304, complete sequence	4537948	1260383	1271164	4537948	protease	Bacillus_phage(16.67%)	7	NA	NA
WP_174293595.1|1260383_1261838_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.1	4.6e-12
WP_003573944.1|1262052_1262682_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	59.2	1.6e-62
WP_003573940.1|1262983_1264261_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.4	1.3e-132
WP_012557323.1|1264682_1267100_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.4	2.5e-204
WP_003573937.1|1267306_1267582_+	HU family DNA-binding protein	NA	A0A172Q061	Acinetobacter_phage	33.0	1.6e-06
WP_012557324.1|1267970_1268870_+	DMT family transporter	NA	NA	NA	NA	NA
WP_174293565.1|1268953_1271164_+	esterase-like activity of phytase family protein	NA	M4SLV1	Cyanophage	42.9	6.0e-80
>prophage 3
NC_011369	Rhizobium leguminosarum bv. trifolii WSM2304, complete sequence	4537948	1517833	1530032	4537948	tRNA	uncultured_Mediterranean_phage(90.0%)	12	NA	NA
WP_012557483.1|1517833_1518691_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.6	2.5e-34
WP_012557484.1|1518687_1519404_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	48.1	2.8e-39
WP_003538990.1|1519585_1519777_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	8.9e-09
WP_012557485.1|1519828_1520455_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003586948.1|1520451_1521279_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	1.2e-52
WP_012557486.1|1521378_1522662_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	1.7e-98
WP_003586945.1|1522666_1523440_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	3.1e-23
WP_012557487.1|1523436_1524090_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.7	8.9e-16
WP_012557488.1|1524229_1525822_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	8.6e-12
WP_012557489.1|1526022_1526895_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003573534.1|1527098_1527446_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.0	3.2e-12
WP_012557490.1|1527491_1530032_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	48.2	4.8e-57
>prophage 4
NC_011369	Rhizobium leguminosarum bv. trifolii WSM2304, complete sequence	4537948	1781606	1791862	4537948		uncultured_Mediterranean_phage(66.67%)	9	NA	NA
WP_012557662.1|1781606_1784528_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.1	0.0e+00
WP_003586486.1|1784808_1785315_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	57.1	7.1e-45
WP_012557663.1|1785401_1786049_-	MarC family protein	NA	NA	NA	NA	NA
WP_012557664.1|1786298_1789124_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.4	2.1e-98
WP_003586478.1|1789485_1789641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012557665.1|1789783_1790062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012557666.1|1790167_1790662_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.2	1.8e-24
WP_003586475.1|1790751_1791324_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	52.0	3.7e-42
WP_003573154.1|1791352_1791862_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.4	3.2e-45
>prophage 5
NC_011369	Rhizobium leguminosarum bv. trifolii WSM2304, complete sequence	4537948	2462233	2490871	4537948	terminase,tail	Sinorhizobium_phage(61.54%)	36	NA	NA
WP_012558202.1|2462233_2462698_-	lysozyme	NA	A0A0K1LL70	Rhodobacter_phage	44.7	2.0e-25
WP_012558203.1|2462672_2462927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012558205.1|2463531_2463720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012558206.1|2463722_2464283_-	acyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	44.6	6.1e-05
WP_012558207.1|2464367_2466839_-	hypothetical protein	NA	A0A076G7H5	Sinorhizobium_phage	53.1	4.7e-49
WP_012558208.1|2466852_2469054_-	hypothetical protein	NA	A0A076G8H4	Sinorhizobium_phage	66.2	9.0e-270
WP_012558209.1|2469050_2469467_-	hypothetical protein	NA	A0A076G6J4	Sinorhizobium_phage	53.7	3.2e-35
WP_012558210.1|2469473_2470088_-	hypothetical protein	NA	A0A076G707	Sinorhizobium_phage	66.7	4.7e-75
WP_012558211.1|2470088_2470820_-	hypothetical protein	NA	A0A076GD29	Sinorhizobium_phage	57.4	1.4e-78
WP_012558212.1|2470822_2473696_-|tail	phage tail tape measure protein	tail	A0A076G7H2	Sinorhizobium_phage	50.9	1.8e-214
WP_012558213.1|2473699_2473993_-	hypothetical protein	NA	A0A076G6J1	Sinorhizobium_phage	62.9	5.2e-32
WP_012558214.1|2474046_2474460_-	hypothetical protein	NA	A0A076G701	Sinorhizobium_phage	75.2	9.2e-51
WP_012558215.1|2474459_2475200_-	hypothetical protein	NA	A0A076GD25	Sinorhizobium_phage	72.0	5.4e-94
WP_012558216.1|2475258_2475690_-	hypothetical protein	NA	A0A076G7G6	Sinorhizobium_phage	81.8	6.9e-65
WP_012558218.1|2475879_2476326_-	hypothetical protein	NA	A0A076G8G8	Sinorhizobium_phage	60.4	3.4e-43
WP_012558219.1|2476325_2477378_-	hypothetical protein	NA	A0A076G6I6	Sinorhizobium_phage	63.6	1.1e-113
WP_012558220.1|2477377_2477545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012558221.1|2477611_2478244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012558222.1|2478307_2478682_-	hypothetical protein	NA	A0A076G8G5	Sinorhizobium_phage	60.2	2.1e-33
WP_012558223.1|2478678_2479173_-	hypothetical protein	NA	A0A2R3UAR2	Siphoviridae_environmental_samples	40.7	2.5e-18
WP_012558224.1|2479178_2479541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041671729.1|2479610_2480594_-	DUF2184 domain-containing protein	NA	A0A2D2W280	Sinorhizobium_phage	54.8	1.1e-89
WP_012558226.1|2480639_2481107_-	hypothetical protein	NA	A0A2D2W1Z4	Sinorhizobium_phage	45.6	4.3e-20
WP_012558227.1|2481110_2482238_-	DUF2213 domain-containing protein	NA	L7TMD6	Rhizobium_phage	48.8	3.0e-88
WP_148221749.1|2482288_2482963_+	SLATT domain-containing protein	NA	NA	NA	NA	NA
WP_012558229.1|2482918_2484307_-	DUF1073 domain-containing protein	NA	L7TRA1	Rhizobium_phage	52.6	3.0e-122
WP_012558230.1|2484316_2485705_-|terminase	phage terminase large subunit	terminase	W8E9V1	Pseudomonas_phage	36.3	8.1e-75
WP_012558231.1|2485691_2486156_-	DUF2280 domain-containing protein	NA	A0A125RNL6	Pseudomonas_phage	57.0	7.7e-38
WP_012558232.1|2486192_2486438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041671473.1|2486434_2487019_-	hypothetical protein	NA	A9YWZ4	Burkholderia_phage	51.9	1.7e-50
WP_012558235.1|2487894_2488152_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012558236.1|2488268_2488952_-	hypothetical protein	NA	A0A076G6H3	Sinorhizobium_phage	44.1	6.2e-36
WP_012558237.1|2488981_2489446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012558238.1|2489445_2489742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012558239.1|2489738_2490500_-	YdaU family protein	NA	A0A0U2RT81	Escherichia_phage	44.2	8.8e-15
WP_012558240.1|2490496_2490871_-	DUF1064 domain-containing protein	NA	A0A0R6PIG9	Moraxella_phage	41.4	1.6e-09
>prophage 6
NC_011369	Rhizobium leguminosarum bv. trifolii WSM2304, complete sequence	4537948	3611112	3621154	4537948		Mycobacterium_phage(25.0%)	9	NA	NA
WP_012559064.1|3611112_3611823_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	48.7	6.0e-50
WP_012559065.1|3611822_3612179_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_012559066.1|3612175_3612904_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	39.0	8.1e-42
WP_012559067.1|3612916_3614140_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	29.9	1.4e-14
WP_012559068.1|3614239_3615214_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	75.4	5.1e-140
WP_012559069.1|3615230_3617435_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	51.8	3.6e-210
WP_012559070.1|3617413_3617818_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	44.8	6.5e-17
WP_012559071.1|3617833_3618055_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	53.4	7.9e-17
WP_012559072.1|3618877_3621154_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	41.4	1.8e-127
