assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000021185.1_ASM2118v1	NC_011660	Listeria monocytogenes HCC23, complete sequence	1	2094578-2096358	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas3,cas5,cas7,cas8b2,cas6	csa3,WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR	Unclear	ATTTACATTTCATAATAAGTAGTTAAAAC,ATTTACATTTCATAATAAGTAGTTAAAAC,ATTTACATTTCATAATAAGTAGTTAAAAC	29,29,29	3	3	2094802-2094837|2095126-2095161|2095647-2095683	NC_011660.1_2926722-2926687|NC_011660.1_1388852-1388887|NC_011660.1_2573241-2573205	I-A:I-A:I-A	27,27,26	27	Unclear	csa3,WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR	NA|492aa|up_8|NC_011660.1_2084284_2085760_-,NA|148aa|up_5|NC_011660.1_2088585_2089029_-,NA	NA|499aa|up_9|NC_011660.1_2082795_2084292_-	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown]	NA|492aa|up_8|NC_011660.1_2084284_2085760_-	NA	NA|247aa|up_7|NC_011660.1_2085999_2086740_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|554aa|up_6|NC_011660.1_2086878_2088540_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|148aa|up_5|NC_011660.1_2088585_2089029_-	NA	NA|251aa|up_4|NC_011660.1_2089136_2089889_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|439aa|up_3|NC_011660.1_2090090_2091407_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|335aa|up_2|NC_011660.1_2091438_2092443_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|472aa|up_1|NC_011660.1_2092574_2093990_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|123aa|up_0|NC_011660.1_2094136_2094505_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	cas2|93aa|down_0|NC_011660.1_2096555_2096834_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas3|728aa|down_1|NC_011660.1_2097136_2099320_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|208aa|down_2|NC_011660.1_2099537_2100161_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|290aa|down_3|NC_011660.1_2100147_2101017_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|563aa|down_4|NC_011660.1_2101006_2102695_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|241aa|down_5|NC_011660.1_2102710_2103433_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|272aa|down_6|NC_011660.1_2103785_2104601_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|477aa|down_7|NC_011660.1_2104721_2106152_+	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|144aa|down_8|NC_011660.1_2106198_2106630_-	pfam00582, Usp, Universal stress protein family	NA|614aa|down_9|NC_011660.1_2106730_2108572_-	NF033186, internalin_K, class 1 internalin InlK
GCF_000021185.1_ASM2118v1	NC_011660	Listeria monocytogenes HCC23, complete sequence	2	2111971-2112389	2,2,2	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas3,cas5,cas7,cas8b2,cas6	csa3,WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR	Unclear	NATTTACATTTCACATTAAGTAACTAAAAC,ATTTACATTTCACATTAAGTAACTAAAAC,ATTTACATTTCACATTAAGTAACTAAAAC	30,29,29	0	0	NA	NA	I-A:I-A:I-A	6,5,5	6	Unclear	csa3,WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR	NA|214aa|up_0|NC_011660.1_2111252_2111894_+,NA|133aa|down_5|NC_011660.1_2116999_2117398_-	cas6|241aa|up_9|NC_011660.1_2102710_2103433_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|272aa|up_8|NC_011660.1_2103785_2104601_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|477aa|up_7|NC_011660.1_2104721_2106152_+	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|144aa|up_6|NC_011660.1_2106198_2106630_-	pfam00582, Usp, Universal stress protein family	NA|614aa|up_5|NC_011660.1_2106730_2108572_-	NF033186, internalin_K, class 1 internalin InlK	NA|153aa|up_4|NC_011660.1_2108952_2109411_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|120aa|up_3|NC_011660.1_2109417_2109777_+	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|227aa|up_2|NC_011660.1_2109801_2110482_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|179aa|up_1|NC_011660.1_2110705_2111242_+	cd11375, Peptidase_M54, Peptidase family M54, also called archaemetzincins or archaelysins	NA|214aa|up_0|NC_011660.1_2111252_2111894_+	NA	NA|312aa|down_0|NC_011660.1_2112625_2113561_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|424aa|down_1|NC_011660.1_2113700_2114972_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|98aa|down_2|NC_011660.1_2114986_2115280_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|349aa|down_3|NC_011660.1_2115295_2116342_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|217aa|down_4|NC_011660.1_2116338_2116989_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|133aa|down_5|NC_011660.1_2116999_2117398_-	NA	NA|156aa|down_6|NC_011660.1_2117414_2117882_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|201aa|down_7|NC_011660.1_2117909_2118512_-	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|687aa|down_8|NC_011660.1_2118515_2120576_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|217aa|down_9|NC_011660.1_2120684_2121335_-	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]
GCF_000021185.1_ASM2118v1	NC_011660	Listeria monocytogenes HCC23, complete sequence	3	2143264-2143848	3	CRT	no		csa3,WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR	Orphan	CATATNAGTTACTGAACTNGTATCAAAATTACTTACATC	39	0	0	NA	NA	NA	7	7	Orphan	csa3,WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR	NA|89aa|up_3|NC_011660.1_2140716_2140983_-,NA|162aa|up_1|NC_011660.1_2141391_2141877_-,NA|158aa|up_0|NC_011660.1_2141896_2142370_-,NA	NA|122aa|up_9|NC_011660.1_2134837_2135203_-	PRK13316, PRK13316, heme oxygenase IsdG	NA|160aa|up_8|NC_011660.1_2135360_2135840_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|up_7|NC_011660.1_2135929_2137033_-	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional	NA|567aa|up_6|NC_011660.1_2137183_2138884_-	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|187aa|up_5|NC_011660.1_2138993_2139554_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|321aa|up_4|NC_011660.1_2139674_2140637_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|89aa|up_3|NC_011660.1_2140716_2140983_-	NA	NA|102aa|up_2|NC_011660.1_2141058_2141364_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|162aa|up_1|NC_011660.1_2141391_2141877_-	NA	NA|158aa|up_0|NC_011660.1_2141896_2142370_-	NA	NA|513aa|down_0|NC_011660.1_2144756_2146295_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|517aa|down_1|NC_011660.1_2146922_2148473_-	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|367aa|down_2|NC_011660.1_2148465_2149566_-	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|428aa|down_3|NC_011660.1_2149566_2150850_-	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|532aa|down_4|NC_011660.1_2150984_2152580_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|316aa|down_5|NC_011660.1_2152736_2153684_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|383aa|down_6|NC_011660.1_2153688_2154837_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|720aa|down_7|NC_011660.1_2154833_2156993_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|252aa|down_8|NC_011660.1_2157109_2157865_+	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|229aa|down_9|NC_011660.1_2157885_2158572_+	COG3619, COG3619, Predicted membrane protein [Function unknown]
GCF_000021185.1_ASM2118v1	NC_011660	Listeria monocytogenes HCC23, complete sequence	4	2275647-2275851	3	PILER-CR	no		csa3,WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR	Orphan	TTTTTACTAACATCTA	16	0	0	NA	NA	NA	3	3	Orphan	csa3,WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR	NA|63aa|up_8|NC_011660.1_2265858_2266047_-,NA|276aa|up_6|NC_011660.1_2266585_2267413_-,NA|127aa|up_5|NC_011660.1_2267537_2267918_-,NA|76aa|up_4|NC_011660.1_2268086_2268314_-,NA|123aa|up_2|NC_011660.1_2269856_2270225_-,NA|213aa|up_0|NC_011660.1_2270862_2271501_-,NA|227aa|down_0|NC_011660.1_2277254_2277935_-,NA|160aa|down_4|NC_011660.1_2284518_2284998_-	NA|666aa|up_9|NC_011660.1_2263741_2265739_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|63aa|up_8|NC_011660.1_2265858_2266047_-	NA	NA|123aa|up_7|NC_011660.1_2266089_2266458_-	COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion]	NA|276aa|up_6|NC_011660.1_2266585_2267413_-	NA	NA|127aa|up_5|NC_011660.1_2267537_2267918_-	NA	NA|76aa|up_4|NC_011660.1_2268086_2268314_-	NA	NA|510aa|up_3|NC_011660.1_2268330_2269860_-	pfam04740, LXG, LXG domain of WXG superfamily	NA|123aa|up_2|NC_011660.1_2269856_2270225_-	NA	NA|95aa|up_1|NC_011660.1_2270225_2270510_-	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|213aa|up_0|NC_011660.1_2270862_2271501_-	NA	NA|227aa|down_0|NC_011660.1_2277254_2277935_-	NA	NA|1349aa|down_1|NC_011660.1_2278072_2282119_-	NF033187, internalin_J, class 1 internalin InlJ	NA|291aa|down_2|NC_011660.1_2282320_2283193_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|301aa|down_3|NC_011660.1_2283355_2284258_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|160aa|down_4|NC_011660.1_2284518_2284998_-	NA	NA|257aa|down_5|NC_011660.1_2285154_2285925_+	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	NA|131aa|down_6|NC_011660.1_2285970_2286363_-	pfam08000, bPH_1, Bacterial PH domain	NA|220aa|down_7|NC_011660.1_2286546_2287206_-	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|472aa|down_8|NC_011660.1_2287481_2288897_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|215aa|down_9|NC_011660.1_2288923_2289568_-	PRK00043, thiE, thiamine phosphate synthase
