assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	1	750417-750497	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	CTTGTAGAGTCGAGCCATGCTCGACT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|162aa|up_8|NC_011071.1_737246_737732_-,NA|144aa|down_5|NC_011071.1_757001_757433_-	NA|212aa|up_9|NC_011071.1_736540_737176_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|162aa|up_8|NC_011071.1_737246_737732_-	NA	NA|158aa|up_7|NC_011071.1_737731_738205_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|482aa|up_6|NC_011071.1_738454_739900_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|841aa|up_5|NC_011071.1_740139_742662_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|904aa|up_4|NC_011071.1_742834_745546_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|169aa|up_3|NC_011071.1_745662_746169_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|404aa|up_2|NC_011071.1_746352_747564_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|572aa|up_1|NC_011071.1_747897_749613_+	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|267aa|up_0|NC_011071.1_749609_750410_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|352aa|down_0|NC_011071.1_750621_751677_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|333aa|down_1|NC_011071.1_751735_752734_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|631aa|down_2|NC_011071.1_752742_754635_-	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein	NA|276aa|down_3|NC_011071.1_754905_755733_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|332aa|down_4|NC_011071.1_755847_756843_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|down_5|NC_011071.1_757001_757433_-	NA	NA|306aa|down_6|NC_011071.1_757514_758432_-	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|396aa|down_7|NC_011071.1_758527_759715_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|322aa|down_8|NC_011071.1_759768_760734_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|433aa|down_9|NC_011071.1_760759_762058_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	2	1088951-1089081	1,2	PILER-CR,CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GGTGGGTGCCGACCGTTGGTCGGCACTGA,GGTGGGTGCCGACCGTTGGTCGGCAC	29,26	0	0	NA	NA	NA:NA	2,2	2	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|89aa|down_2|NC_011071.1_1090671_1090938_-	NA|328aa|up_9|NC_011071.1_1080843_1081827_+	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|300aa|up_8|NC_011071.1_1081882_1082782_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|70aa|up_7|NC_011071.1_1082875_1083085_+	pfam14117, DUF4287, Domain of unknown function (DUF4287)	NA|150aa|up_6|NC_011071.1_1083181_1083631_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|236aa|up_5|NC_011071.1_1083724_1084432_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|181aa|up_4|NC_011071.1_1084505_1085048_-	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	NA|596aa|up_3|NC_011071.1_1085044_1086832_-	pfam13687, DUF4153, Domain of unknown function (DUF4153)	NA|189aa|up_2|NC_011071.1_1086923_1087490_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|165aa|up_1|NC_011071.1_1087482_1087977_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|317aa|up_0|NC_011071.1_1087992_1088943_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|164aa|down_0|NC_011071.1_1089191_1089683_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|266aa|down_1|NC_011071.1_1089803_1090601_-	COG4099, COG4099, Predicted peptidase [General function prediction only]	NA|89aa|down_2|NC_011071.1_1090671_1090938_-	NA	NA|454aa|down_3|NC_011071.1_1090999_1092361_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|590aa|down_4|NC_011071.1_1092541_1094311_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|90aa|down_5|NC_011071.1_1094313_1094583_-	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family	NA|131aa|down_6|NC_011071.1_1094575_1094968_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|295aa|down_7|NC_011071.1_1095540_1096425_-	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|down_8|NC_011071.1_1096452_1097403_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|151aa|down_9|NC_011071.1_1097399_1097852_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	3	1340869-1340960	3	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	TTGCCGGCCAGCGGCTGGCACTACCGA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|223aa|up_3|NC_011071.1_1338691_1339360_+,NA|295aa|down_0|NC_011071.1_1340997_1341882_-,NA|120aa|down_6|NC_011071.1_1346940_1347300_-	NA|376aa|up_9|NC_011071.1_1332113_1333241_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|396aa|up_8|NC_011071.1_1333237_1334425_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|338aa|up_7|NC_011071.1_1334409_1335423_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|467aa|up_6|NC_011071.1_1335415_1336816_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|298aa|up_5|NC_011071.1_1336894_1337788_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|207aa|up_4|NC_011071.1_1337895_1338516_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|223aa|up_3|NC_011071.1_1338691_1339360_+	NA	NA|263aa|up_2|NC_011071.1_1339356_1340145_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|71aa|up_1|NC_011071.1_1340149_1340362_-	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|120aa|up_0|NC_011071.1_1340430_1340790_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|295aa|down_0|NC_011071.1_1340997_1341882_-	NA	NA|355aa|down_1|NC_011071.1_1341885_1342950_-	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|NC_011071.1_1342978_1344379_-	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|239aa|down_3|NC_011071.1_1344441_1345158_-	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily	NA|401aa|down_4|NC_011071.1_1345332_1346535_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|133aa|down_5|NC_011071.1_1346545_1346944_-	pfam00892, EamA, EamA-like transporter family	NA|120aa|down_6|NC_011071.1_1346940_1347300_-	NA	NA|279aa|down_7|NC_011071.1_1347301_1348138_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|460aa|down_8|NC_011071.1_1348218_1349598_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|228aa|down_9|NC_011071.1_1349594_1350278_-	PRK10643, PRK10643, two-component system response regulator PmrA
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	4	2168349-2168423	4	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	ACCTTGGTTGGCACGCCTTTTGGCG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|158aa|up_8|NC_011071.1_2160623_2161097_-,NA|128aa|up_4|NC_011071.1_2164928_2165312_-,NA|91aa|up_3|NC_011071.1_2165440_2165713_-,NA|423aa|up_0|NC_011071.1_2167002_2168271_+,NA|125aa|down_8|NC_011071.1_2179871_2180246_-	NA|154aa|up_9|NC_011071.1_2160160_2160622_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|158aa|up_8|NC_011071.1_2160623_2161097_-	NA	NA|109aa|up_7|NC_011071.1_2161209_2161536_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|up_6|NC_011071.1_2161616_2162429_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|up_5|NC_011071.1_2162567_2164853_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|128aa|up_4|NC_011071.1_2164928_2165312_-	NA	NA|91aa|up_3|NC_011071.1_2165440_2165713_-	NA	NA|73aa|up_2|NC_011071.1_2165884_2166103_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|247aa|up_1|NC_011071.1_2166189_2166930_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|423aa|up_0|NC_011071.1_2167002_2168271_+	NA	NA|375aa|down_0|NC_011071.1_2168448_2169573_-	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition	NA|504aa|down_1|NC_011071.1_2169750_2171262_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|324aa|down_2|NC_011071.1_2171343_2172315_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|787aa|down_3|NC_011071.1_2172547_2174908_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|648aa|down_4|NC_011071.1_2174947_2176891_+	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857)	NA|213aa|down_5|NC_011071.1_2177002_2177641_+	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|454aa|down_6|NC_011071.1_2177875_2179237_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|124aa|down_7|NC_011071.1_2179426_2179798_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|125aa|down_8|NC_011071.1_2179871_2180246_-	NA	NA|343aa|down_9|NC_011071.1_2180528_2181557_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	5	2384511-2384618	5	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GCGCCAACCAAGGTTGGCGACTACC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|159aa|up_9|NC_011071.1_2374530_2375007_+,NA|100aa|up_2|NC_011071.1_2382297_2382597_+,NA|100aa|down_7|NC_011071.1_2394756_2395056_+	NA|159aa|up_9|NC_011071.1_2374530_2375007_+	NA	NA|260aa|up_8|NC_011071.1_2375003_2375783_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|359aa|up_7|NC_011071.1_2375786_2376863_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|309aa|up_6|NC_011071.1_2377063_2377990_+	pfam13748, ABC_membrane_3, ABC transporter transmembrane region	NA|205aa|up_5|NC_011071.1_2378250_2378865_-	PRK13756, PRK13756, TetR family transcriptional regulator	NA|279aa|up_4|NC_011071.1_2379035_2379872_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|726aa|up_3|NC_011071.1_2380067_2382245_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|100aa|up_2|NC_011071.1_2382297_2382597_+	NA	NA|537aa|up_1|NC_011071.1_2382593_2384204_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|93aa|up_0|NC_011071.1_2384200_2384479_+	pfam11804, DUF3325, Protein of unknown function (DUF3325)	NA|363aa|down_0|NC_011071.1_2384650_2385739_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|205aa|down_1|NC_011071.1_2385816_2386431_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|749aa|down_2|NC_011071.1_2386670_2388917_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|895aa|down_3|NC_011071.1_2388984_2391669_-	cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain associated with serine/threonine kinases	NA|222aa|down_4|NC_011071.1_2392130_2392796_-	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional	NA|316aa|down_5|NC_011071.1_2392910_2393858_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|100aa|down_6|NC_011071.1_2394163_2394463_+	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein	NA|100aa|down_7|NC_011071.1_2394756_2395056_+	NA	NA|920aa|down_8|NC_011071.1_2395118_2397878_+	PRK10517, PRK10517, magnesium-transporting P-type ATPase MgtA	NA|246aa|down_9|NC_011071.1_2397909_2398647_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	6	3123256-3123359	6	CRISPRCasFinder	no	csa3	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Type I-A	AGGACCAACGGTCCTCACCCACAG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|99aa|up_4|NC_011071.1_3118704_3119001_+,NA|88aa|up_3|NC_011071.1_3119000_3119264_+,NA	NA|332aa|up_9|NC_011071.1_3113740_3114736_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|120aa|up_8|NC_011071.1_3114928_3115288_-	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|66aa|up_7|NC_011071.1_3115299_3115497_-	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|181aa|up_6|NC_011071.1_3115781_3116324_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|634aa|up_5|NC_011071.1_3116373_3118275_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|99aa|up_4|NC_011071.1_3118704_3119001_+	NA	NA|88aa|up_3|NC_011071.1_3119000_3119264_+	NA	NA|520aa|up_2|NC_011071.1_3119274_3120834_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|397aa|up_1|NC_011071.1_3120870_3122061_-	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|377aa|up_0|NC_011071.1_3122119_3123250_+	sd00006, TPR, Tetratricopeptide repeat	NA|703aa|down_0|NC_011071.1_3123377_3125486_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|87aa|down_1|NC_011071.1_3125637_3125898_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|303aa|down_2|NC_011071.1_3126071_3126980_-	PRK04642, truB, tRNA pseudouridine synthase B; Provisional	NA|128aa|down_3|NC_011071.1_3127089_3127473_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|884aa|down_4|NC_011071.1_3127634_3130286_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|504aa|down_5|NC_011071.1_3130378_3131890_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|197aa|down_6|NC_011071.1_3131894_3132485_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|487aa|down_7|NC_011071.1_3133249_3134710_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|503aa|down_8|NC_011071.1_3134725_3136234_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|725aa|down_9|NC_011071.1_3136257_3138432_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	7	3485042-3485133	7	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GCACCCACCAGAGTCAGACCTCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|113aa|up_1|NC_011071.1_3483379_3483718_+,NA	NA|601aa|up_9|NC_011071.1_3476081_3477884_+	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|342aa|up_8|NC_011071.1_3477880_3478906_+	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|171aa|up_7|NC_011071.1_3478989_3479502_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|107aa|up_6|NC_011071.1_3479545_3479866_-	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|up_5|NC_011071.1_3480015_3480783_+	pfam02517, Abi, CAAX protease self-immunity	NA|142aa|up_4|NC_011071.1_3480877_3481303_+	pfam00072, Response_reg, Response regulator receiver domain	NA|313aa|up_3|NC_011071.1_3481340_3482279_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|281aa|up_2|NC_011071.1_3482363_3483206_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|113aa|up_1|NC_011071.1_3483379_3483718_+	NA	NA|319aa|up_0|NC_011071.1_3484045_3485002_+	pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268)	NA|222aa|down_0|NC_011071.1_3485204_3485870_-	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|234aa|down_1|NC_011071.1_3485947_3486649_-	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type	NA|273aa|down_2|NC_011071.1_3486886_3487705_-	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]	NA|173aa|down_3|NC_011071.1_3487708_3488227_-	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|440aa|down_4|NC_011071.1_3488291_3489611_-	PRK04922, tolB, Tol-Pal system beta propeller repeat protein TolB	NA|352aa|down_5|NC_011071.1_3489907_3490963_-	TIGR02794, Protein_TolA, TolA protein	NA|143aa|down_6|NC_011071.1_3490952_3491381_-	TIGR02801, Protein_TolR, TolR protein	NA|260aa|down_7|NC_011071.1_3491405_3492185_-	TIGR02796, Protein_TolQ, TolQ protein	NA|144aa|down_8|NC_011071.1_3492195_3492627_-	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|347aa|down_9|NC_011071.1_3492616_3493657_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	8	3841699-3841778	8	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	CGACCAAGGTCGACACCTACCAGAGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|201aa|up_7|NC_011071.1_3834768_3835371_+,NA|79aa|up_4|NC_011071.1_3838030_3838267_+,NA|112aa|up_1|NC_011071.1_3840154_3840490_-,NA	NA|715aa|up_9|NC_011071.1_3829512_3831657_+	PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane transporter; Provisional	NA|954aa|up_8|NC_011071.1_3831805_3834667_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|201aa|up_7|NC_011071.1_3834768_3835371_+	NA	NA|136aa|up_6|NC_011071.1_3835380_3835788_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|662aa|up_5|NC_011071.1_3835939_3837925_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|79aa|up_4|NC_011071.1_3838030_3838267_+	NA	NA|407aa|up_3|NC_011071.1_3838380_3839601_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|145aa|up_2|NC_011071.1_3839670_3840105_-	pfam07179, SseB, SseB protein N-terminal domain	NA|112aa|up_1|NC_011071.1_3840154_3840490_-	NA	NA|388aa|up_0|NC_011071.1_3840493_3841657_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|1010aa|down_0|NC_011071.1_3841809_3844839_-	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|356aa|down_1|NC_011071.1_3845149_3846217_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|383aa|down_2|NC_011071.1_3846216_3847365_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|343aa|down_3|NC_011071.1_3847364_3848393_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|356aa|down_4|NC_011071.1_3848400_3849468_-	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|430aa|down_5|NC_011071.1_3849507_3850797_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|340aa|down_6|NC_011071.1_3851173_3852193_+	PRK12408, PRK12408, glucokinase; Provisional	NA|903aa|down_7|NC_011071.1_3852336_3855045_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|786aa|down_8|NC_011071.1_3855156_3857514_+	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|131aa|down_9|NC_011071.1_3857694_3858087_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	9	4195300-4195410	9	CRISPRCasFinder	no	PD-DExK	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Unclear	GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|218aa|down_8|NC_011071.1_4203626_4204280_-,NA|180aa|down_9|NC_011071.1_4204405_4204945_+	NA|265aa|up_9|NC_011071.1_4186252_4187047_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|344aa|up_8|NC_011071.1_4187121_4188153_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|196aa|up_7|NC_011071.1_4188169_4188757_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|260aa|up_6|NC_011071.1_4188759_4189539_-	pfam04402, SIMPL, Protein of unknown function (DUF541)	NA|492aa|up_5|NC_011071.1_4189606_4191082_-	PRK13565, PRK13565, anthranilate synthase component I; Provisional	NA|318aa|up_4|NC_011071.1_4191374_4192328_-	PRK13054, PRK13054, lipid kinase; Reviewed	NA|161aa|up_3|NC_011071.1_4192610_4193093_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|225aa|up_2|NC_011071.1_4193151_4193826_-	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional	NA|110aa|up_1|NC_011071.1_4193856_4194186_-	PRK09430, djlA, co-chaperone DjlA	NA|311aa|up_0|NC_011071.1_4194321_4195254_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|down_0|NC_011071.1_4195474_4195960_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|944aa|down_1|NC_011071.1_4196293_4199125_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|down_2|NC_011071.1_4199124_4199517_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|down_3|NC_011071.1_4199513_4201049_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|down_4|NC_011071.1_4201045_4201552_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|down_5|NC_011071.1_4201548_4201833_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|down_6|NC_011071.1_4201829_4202219_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|322aa|down_7|NC_011071.1_4202587_4203553_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|218aa|down_8|NC_011071.1_4203626_4204280_-	NA	NA|180aa|down_9|NC_011071.1_4204405_4204945_+	NA
GCF_000020665.1_ASM2066v1	NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	10	4202221-4202319	10	CRISPRCasFinder	no	PD-DExK,WYL	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Unclear	CCCGGTAGAGGCCGACCTTGGCCGG	25	1	1	4202246-4202294	NC_011071.1_4202395-4202443	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|218aa|down_1|NC_011071.1_4203626_4204280_-,NA|180aa|down_2|NC_011071.1_4204405_4204945_+,NA|380aa|down_7|NC_011071.1_4209383_4210523_-	NA|225aa|up_9|NC_011071.1_4193151_4193826_-	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional	NA|110aa|up_8|NC_011071.1_4193856_4194186_-	PRK09430, djlA, co-chaperone DjlA	NA|311aa|up_7|NC_011071.1_4194321_4195254_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|up_6|NC_011071.1_4195474_4195960_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|944aa|up_5|NC_011071.1_4196293_4199125_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|up_4|NC_011071.1_4199124_4199517_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|up_3|NC_011071.1_4199513_4201049_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|up_2|NC_011071.1_4201045_4201552_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|up_1|NC_011071.1_4201548_4201833_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|up_0|NC_011071.1_4201829_4202219_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|322aa|down_0|NC_011071.1_4202587_4203553_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|218aa|down_1|NC_011071.1_4203626_4204280_-	NA	NA|180aa|down_2|NC_011071.1_4204405_4204945_+	NA	NA|433aa|down_3|NC_011071.1_4205027_4206326_-	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	NA|357aa|down_4|NC_011071.1_4206428_4207499_-	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|186aa|down_5|NC_011071.1_4207607_4208165_+	COG1846, MarR, Transcriptional regulators [Transcription]	PD-DExK|324aa|down_6|NC_011071.1_4208393_4209365_+	pfam06250, DUF1016, Protein of unknown function (DUF1016)	NA|380aa|down_7|NC_011071.1_4209383_4210523_-	NA	NA|200aa|down_8|NC_011071.1_4210775_4211375_-	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|500aa|down_9|NC_011071.1_4211394_4212894_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]
