The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	4573969	592505	600763	4573969		Enterobacteria_phage(42.86%)	7	NA	NA
WP_012509980.1|592505_593561_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.5	8.3e-80
WP_012509981.1|593575_594463_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.5	8.2e-97
WP_012509982.1|594459_595017_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	50.0	1.0e-44
WP_012509983.1|595013_595952_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.2	8.6e-28
WP_012509984.1|596070_597909_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	44.6	1.1e-135
WP_012509985.1|598001_599405_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	27.9	6.6e-40
WP_012509986.1|599416_600763_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.2	1.5e-28
>prophage 2
NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	4573969	970230	1089683	4573969	plate,transposase,tail,protease	Escherichia_phage(19.23%)	108	NA	NA
WP_004146319.1|970230_971520_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.8	1.1e-134
WP_012510194.1|971662_974113_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.2	2.1e-222
WP_004146343.1|974330_974603_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	61.8	7.7e-22
WP_012510195.1|975494_977450_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_012510196.1|977659_978859_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_012510197.1|978855_979620_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_012510198.1|979631_980276_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_012510199.1|980289_980742_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	52.7	2.9e-42
WP_004146409.1|980746_981478_+	DNA polymerase III subunit epsilon	NA	A0A1B2LRV5	Wolbachia_phage	40.9	1.4e-06
WP_004146411.1|981547_982252_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_012510200.1|983833_986848_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_012510201.1|987139_987544_+	hypothetical protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	35.3	7.7e-18
WP_012510202.1|987562_988609_-	glycosyltransferase family 9 protein	NA	NA	NA	NA	NA
WP_012510203.1|988629_989379_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
WP_012510204.1|989378_990146_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_012510205.1|990142_990532_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_004146694.1|991035_991353_+	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_012510206.1|991710_1002600_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_012510207.1|1002657_1003101_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_050767029.1|1003161_1004016_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA	NA
WP_041864476.1|1004672_1006736_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	41.8	1.3e-47
WP_004154630.1|1006742_1007063_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_012510210.1|1007174_1007774_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_004146872.1|1007841_1008201_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
WP_012510211.1|1008281_1008809_-	Slp family lipoprotein	NA	NA	NA	NA	NA
WP_012510212.1|1008805_1010755_-	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA	NA
WP_012510213.1|1010747_1011692_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_012510214.1|1011694_1012648_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_004146882.1|1012690_1014526_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_012510215.1|1014646_1015216_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_004146886.1|1015329_1015839_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_004154640.1|1015947_1016142_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_004146896.1|1016233_1017211_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_012510216.1|1017287_1018070_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
WP_012510217.1|1018238_1019183_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_004146899.1|1019265_1020009_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.9	1.4e-12
WP_012510218.1|1020161_1020401_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	44.6	4.6e-10
WP_012510219.1|1020544_1021807_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_012510220.1|1021899_1023264_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA	NA
WP_012510221.1|1023461_1024523_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_012510222.1|1024519_1025185_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	43.3	7.9e-36
WP_012510223.1|1025181_1026138_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_004146965.1|1026134_1026488_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_012510224.1|1026984_1027365_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_012510225.1|1027396_1028470_-|tail	phage tail protein	tail	D5LGY1	Escherichia_phage	49.6	4.8e-91
WP_012510226.1|1028460_1028676_-|tail	tail protein X	tail	NA	NA	NA	NA
WP_012510227.1|1028659_1029127_-|tail	phage tail protein	tail	A4PE53	Ralstonia_virus	30.4	4.4e-09
WP_012510228.1|1029129_1031601_-|tail	phage tail tape measure protein	tail	A0A1W6JT50	Escherichia_phage	23.2	2.0e-23
WP_005412456.1|1031721_1032012_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	58.5	1.5e-18
WP_012510229.1|1032092_1032596_-|tail	phage major tail tube protein	tail	A0A193GYM4	Enterobacter_phage	50.6	5.2e-40
WP_012510230.1|1032598_1033801_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A088FVH5	Escherichia_phage	50.3	2.7e-119
WP_012510231.1|1033907_1034567_-	hypothetical protein	NA	V9IQM3	Stenotrophomonas_phage	32.9	6.2e-17
WP_012510232.1|1034568_1036539_-|tail	tail fiber domain-containing protein	tail	V9IQX0	Stenotrophomonas_phage	41.9	1.6e-113
WP_012510233.1|1036546_1037848_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	51.7	5.7e-46
WP_012510234.1|1037840_1038737_-|plate	baseplate J/gp47 family protein	plate	V5YTH6	Pseudomonas_phage	55.5	1.2e-79
WP_005408332.1|1038739_1039078_-	GPW/gp25 family protein	NA	A0A193GYY8	Enterobacter_phage	62.2	7.8e-32
WP_012510235.1|1039130_1039721_-|plate	phage baseplate assembly protein V	plate	A0A193GYL5	Enterobacter_phage	38.7	1.5e-25
WP_012510236.1|1039717_1040272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157628458.1|1040389_1040719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012510237.1|1040624_1041002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012510238.1|1040998_1041484_-	glycoside hydrolase family 104 protein	NA	D5LH07	Escherichia_phage	55.0	3.5e-41
WP_012510239.1|1041480_1041831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012510240.1|1041827_1042277_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012510241.1|1042611_1042995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012510242.1|1043147_1043786_-	hypothetical protein	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	38.2	4.0e-21
WP_012510243.1|1043827_1044055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012510244.1|1044129_1044405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012510245.1|1044405_1046742_-	toprim domain-containing protein	NA	D5LH15	Escherichia_phage	43.1	3.7e-136
WP_012510246.1|1047227_1047452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012510247.1|1047463_1047718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012510248.1|1047934_1048330_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
WP_087943707.1|1048486_1050598_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_012510250.1|1050609_1052109_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_012510251.1|1052118_1053252_-	MFS transporter	NA	NA	NA	NA	NA
WP_012510252.1|1053263_1054040_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_012510253.1|1054198_1054846_+	Qnr family pentapeptide repeat protein	NA	NA	NA	NA	NA
WP_012510254.1|1054849_1055524_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_012510255.1|1055622_1057002_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_012510256.1|1057135_1057999_+	DMT family transporter	NA	NA	NA	NA	NA
WP_041864480.1|1058038_1058974_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	21.6	5.8e-08
WP_012510258.1|1059081_1060599_+	MFS transporter	NA	NA	NA	NA	NA
WP_012510259.1|1060582_1062673_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_012510260.1|1062772_1064158_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012510261.1|1064135_1064819_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012510262.1|1064972_1066151_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_004147062.1|1066155_1069257_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_012510263.1|1069527_1069932_-	GFA family protein	NA	NA	NA	NA	NA
WP_012510264.1|1070103_1071078_+	DUF4105 domain-containing protein	NA	NA	NA	NA	NA
WP_012510265.1|1071077_1073102_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_041864481.1|1073225_1074647_-	MFS transporter	NA	NA	NA	NA	NA
WP_004147068.1|1074676_1075111_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_012510267.1|1075183_1075786_-	short chain dehydrogenase	NA	NA	NA	NA	NA
WP_012510268.1|1075886_1076762_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012510269.1|1076821_1077643_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_012510270.1|1077661_1078339_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_004147099.1|1078426_1079464_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_005408369.1|1079548_1080691_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA	NA
WP_012510271.1|1080843_1081827_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_012510272.1|1081882_1082782_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012510273.1|1082875_1083085_+	DUF4287 domain-containing protein	NA	NA	NA	NA	NA
WP_012510274.1|1083181_1083631_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012510275.1|1083724_1084432_+	YitT family protein	NA	NA	NA	NA	NA
WP_012510276.1|1084505_1085048_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_012510277.1|1085044_1086832_-	DUF4153 domain-containing protein	NA	NA	NA	NA	NA
WP_004147177.1|1086923_1087490_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_012510278.1|1087482_1087977_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_004147181.1|1087992_1088943_+	aspartate carbamoyltransferase catalytic subunit	NA	NA	NA	NA	NA
WP_004147230.1|1089191_1089683_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	4573969	2220995	2226696	4573969		uncultured_Caudovirales_phage(83.33%)	8	NA	NA
WP_012511040.1|2220995_2221415_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	62.5	1.3e-39
WP_012511041.1|2221411_2222152_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.5	6.7e-84
WP_012511042.1|2222192_2222507_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005407578.1|2222531_2223023_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	40.3	3.6e-25
WP_012511043.1|2223043_2224102_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_012511044.1|2224105_2225092_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	43.8	1.3e-63
WP_012511045.1|2225116_2226202_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4J2Q2	uncultured_Caudovirales_phage	56.1	1.0e-88
WP_012511046.1|2226162_2226696_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	44.9	8.0e-31
>prophage 4
NC_011071	Stenotrophomonas maltophilia R551-3, complete genome	4573969	2783038	2815370	4573969	terminase,tail,integrase,portal,head,capsid,protease,lysis	Burkholderia_phage(35.71%)	33	2782871:2782886	2787777:2787792
2782871:2782886	attL	GAACATCTTGGCGGAG	NA	NA	NA	NA
WP_012511462.1|2783038_2784232_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	51.3	2.3e-102
WP_157628466.1|2784228_2784864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157628467.1|2784860_2785286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012511464.1|2785287_2786325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041864550.1|2786718_2787231_-	hypothetical protein	NA	B7SYF7	Stenotrophomonas_phage	46.4	5.3e-32
WP_012511466.1|2788119_2788734_-	hypothetical protein	NA	NA	NA	NA	NA
2787777:2787792	attR	GAACATCTTGGCGGAG	NA	NA	NA	NA
WP_157628468.1|2789538_2790096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157628480.1|2790738_2791410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012511469.1|2791406_2791703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012511470.1|2791754_2795117_-	carbohydrate-binding CenC domain-containing protein	NA	I7HDJ4	Xanthomonas_virus	49.6	2.8e-52
WP_012511471.1|2795123_2799707_-	tape measure protein	NA	A0A059VJZ1	Pseudomonas_phage	52.4	1.1e-46
WP_012511472.1|2800125_2800869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157628481.1|2800891_2802865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012511474.1|2802861_2803077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012511475.1|2803154_2803529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012511476.1|2803650_2804124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012511477.1|2804202_2804565_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_012511478.1|2804561_2805065_-	HK97 gp10 family phage protein	NA	Q8W6U1	Burkholderia_virus	31.9	1.6e-09
WP_012511479.1|2805057_2805393_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_012511480.1|2805389_2805869_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_012511481.1|2805870_2806341_-	hypothetical protein	NA	Q3HQT1	Burkholderia_phage	59.2	2.9e-08
WP_012511482.1|2806402_2807653_-|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	63.8	5.1e-145
WP_012511483.1|2807664_2808507_-|protease	Clp protease ClpP	protease	Q3HQS9	Burkholderia_phage	73.0	1.1e-103
WP_012511484.1|2808484_2809747_-|portal	phage portal protein	portal	Q3HQS8	Burkholderia_phage	54.1	1.0e-116
WP_157628469.1|2809755_2811636_-|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	49.9	2.4e-154
WP_157628470.1|2811592_2811970_-	hypothetical protein	NA	A0A141GEV7	Brucella_phage	36.6	4.4e-07
WP_012511487.1|2812121_2812445_-	HNH endonuclease	NA	A0A2I7RZM4	Vibrio_phage	55.0	9.2e-06
WP_012511488.1|2812444_2812735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157628471.1|2812897_2813230_-	DUF1064 domain-containing protein	NA	Q3HQZ9	Burkholderia_phage	69.1	4.5e-40
WP_012511490.1|2813362_2813959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041864553.1|2814115_2814574_-|lysis	lysis protein	lysis	NA	NA	NA	NA
WP_012511492.1|2814570_2814885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012511493.1|2814881_2815370_-	glycoside hydrolase family 104 protein	NA	D5LH07	Escherichia_phage	79.5	3.0e-69
