The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010682	Ralstonia pickettii 12J chromosome 1, complete sequence	3942557	671370	681958	3942557		Escherichia_phage(25.0%)	11	NA	NA
WP_012435033.1|671370_672453_-	acyltransferase	NA	W6MVL2	Pseudomonas_phage	32.9	1.8e-21
WP_080515813.1|672449_673421_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	26.4	1.5e-06
WP_080515814.1|673387_674593_-	O-antigen translocase	NA	NA	NA	NA	NA
WP_012435036.1|674631_675756_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L470	Tupanvirus	28.0	9.0e-32
WP_028866772.1|675800_676571_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_012435038.1|676564_676975_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_012435039.1|676964_677885_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	32.1	3.6e-31
WP_012435040.1|677881_678436_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	52.8	1.1e-46
WP_012435041.1|678432_679317_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	59.9	1.5e-98
WP_012435042.1|679331_680393_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	48.5	6.6e-85
WP_012435043.1|680569_681958_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	28.2	4.1e-50
>prophage 2
NC_010682	Ralstonia pickettii 12J chromosome 1, complete sequence	3942557	829225	837509	3942557		Bacillus_phage(16.67%)	8	NA	NA
WP_004629188.1|829225_830590_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	39.3	7.0e-79
WP_004629186.1|830626_831559_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.0	7.5e-16
WP_012435141.1|831577_832573_+	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	33.0	1.4e-28
WP_012435142.1|832710_833034_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012435143.1|833146_834049_+	cysteine synthase CysM	NA	A0A1X9I5F1	Streptococcus_phage	41.5	1.8e-54
WP_012435144.1|834116_835241_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_012435145.1|835372_836296_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	36.4	4.0e-46
WP_012435146.1|836459_837509_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.4	1.8e-34
>prophage 3
NC_010682	Ralstonia pickettii 12J chromosome 1, complete sequence	3942557	1486521	1495410	3942557	coat	Ralstonia_phage(100.0%)	11	NA	NA
WP_012435529.1|1486521_1487577_+	zonular occludens toxin	NA	E5F074	Ralstonia_phage	41.3	6.6e-61
WP_157042464.1|1487697_1487964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012435531.1|1488656_1489679_-	hypothetical protein	NA	Q6UAY9	Ralstonia_phage	100.0	1.7e-199
WP_012435532.1|1490137_1490632_-	DNA-binding protein	NA	Q6UAZ0	Ralstonia_phage	100.0	1.1e-85
WP_012435533.1|1490717_1491866_-	zonular occludens toxin	NA	Q6UAZ2	Ralstonia_phage	100.0	7.9e-209
WP_012435534.1|1491873_1492194_-	DUF2523 domain-containing protein	NA	Q6UAZ3	Ralstonia_phage	100.0	1.0e-33
WP_012435535.1|1492194_1493661_-	hypothetical protein	NA	Q6UAZ4	Ralstonia_phage	100.0	7.4e-252
WP_012435536.1|1493804_1494008_-|coat	phage coat protein	coat	Q6UAZ5	Ralstonia_phage	100.0	2.5e-25
WP_012435538.1|1494245_1494554_-	hypothetical protein	NA	Q6UAZ7	Ralstonia_phage	100.0	1.1e-53
WP_012435539.1|1494604_1494967_-	hypothetical protein	NA	Q6UAZ8	Ralstonia_phage	100.0	2.3e-61
WP_080515821.1|1495113_1495410_+	hypothetical protein	NA	A0A1W5LU58	Ralstonia_phage	51.2	7.9e-12
>prophage 4
NC_010682	Ralstonia pickettii 12J chromosome 1, complete sequence	3942557	1564453	1586684	3942557	transposase,integrase	Enterobacteria_phage(33.33%)	23	1553748:1553761	1588937:1588950
1553748:1553761	attL	TCGGCGCCCTGGAG	NA	NA	NA	NA
WP_009239173.1|1564453_1565260_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_012435586.1|1565552_1566479_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012435587.1|1566488_1567382_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012077404.1|1567652_1570682_-|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
WP_012435588.1|1570678_1571272_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	49.2	1.1e-39
WP_011342941.1|1571510_1571789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011342942.1|1571785_1572070_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA	NA
WP_011514928.1|1572476_1573037_+	chlorite dismutase family protein	NA	NA	NA	NA	NA
WP_012435589.1|1573170_1573527_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_080515823.1|1573967_1574840_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_004635279.1|1575013_1575427_+	CzcE family metal-binding protein	NA	NA	NA	NA	NA
WP_004635277.1|1575454_1575709_-	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
WP_009238807.1|1575739_1577269_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	46.1	1.4e-115
WP_004633551.1|1577331_1577622_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_004633552.1|1577663_1578035_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012435593.1|1578269_1578677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012435594.1|1578755_1579205_-	GtrA family protein	NA	NA	NA	NA	NA
WP_012435595.1|1579274_1580141_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012435376.1|1580679_1581723_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	30.9	3.9e-37
WP_012435597.1|1582151_1582967_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012435598.1|1583087_1583735_-	TniQ family protein	NA	NA	NA	NA	NA
WP_012435599.1|1583703_1584681_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_024542519.1|1584707_1586684_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
1588937:1588950	attR	CTCCAGGGCGCCGA	NA	NA	NA	NA
>prophage 5
NC_010682	Ralstonia pickettii 12J chromosome 1, complete sequence	3942557	1768065	1829386	3942557	protease,transposase,integrase	Caulobacter_phage(11.11%)	53	1790304:1790318	1830209:1830223
WP_012435740.1|1768065_1768713_+|transposase	heteromeric transposase endonuclease subunit TnsA	transposase	NA	NA	NA	NA
WP_012435741.1|1768715_1770638_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_012435742.1|1770630_1771536_+	TniB family NTP-binding protein	NA	NA	NA	NA	NA
WP_012435743.1|1771532_1772594_+	TniQ family protein	NA	NA	NA	NA	NA
WP_012435744.1|1772561_1774244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012435745.1|1774333_1774687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139111351.1|1775072_1777739_+	protein kinase	NA	NA	NA	NA	NA
WP_012435747.1|1777731_1778949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012435748.1|1778945_1780157_-	DUF4338 domain-containing protein	NA	NA	NA	NA	NA
WP_012435749.1|1780328_1781105_-	metallophosphoesterase	NA	A0A067XQN2	Caulobacter_phage	36.4	1.7e-37
WP_012435750.1|1781082_1781310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012435751.1|1781425_1782646_-	AAA family ATPase	NA	A0A2P0VN73	Tetraselmis_virus	29.5	6.0e-05
WP_004635189.1|1784079_1785225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004635187.1|1785321_1787019_+	AarF/ABC1/UbiB kinase family protein	NA	A9YVW0	Ostreococcus_tauri_virus	29.7	1.4e-41
WP_004635185.1|1787069_1788254_-	methionine adenosyltransferase	NA	NA	NA	NA	NA
WP_004635183.1|1788508_1789132_+	LemA family protein	NA	NA	NA	NA	NA
WP_012435753.1|1789128_1789989_+	YgcG family protein	NA	NA	NA	NA	NA
WP_004635178.1|1789988_1790489_+	TPM domain-containing protein	NA	NA	NA	NA	NA
1790304:1790318	attL	CACGCGCGGGTTGGT	NA	NA	NA	NA
WP_009241694.1|1790540_1791017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004635173.1|1791173_1791422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004635170.1|1791770_1792631_+	polyphosphate kinase 2	NA	NA	NA	NA	NA
WP_009241693.1|1792707_1793313_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_009241692.1|1793425_1795366_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQU5	Bathycoccus_sp._RCC1105_virus	45.8	4.3e-106
WP_004635167.1|1795744_1797340_+	oleate hydratase	NA	NA	NA	NA	NA
WP_004635164.1|1797480_1797858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004635162.1|1798111_1798405_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_004635160.1|1798478_1798793_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_012435755.1|1798816_1799482_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
WP_004635157.1|1799498_1800863_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_004635154.1|1800859_1802374_+	thymidine phosphorylase family protein	NA	NA	NA	NA	NA
WP_004635153.1|1802370_1803276_+	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA	NA
WP_009241691.1|1803418_1804762_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	37.3	8.5e-45
WP_004635145.1|1804766_1805417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004635142.1|1805413_1807858_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.9	4.2e-82
WP_004635140.1|1807865_1809173_+	MFS transporter	NA	NA	NA	NA	NA
WP_012435756.1|1809338_1809665_-	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
WP_009277764.1|1810242_1810629_+	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA	NA
WP_009241690.1|1810751_1812149_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_012435757.1|1812148_1812835_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	6.5e-33
WP_009241688.1|1813006_1814902_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_012435758.1|1814901_1815876_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_009241686.1|1815908_1816295_+	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA	NA
WP_009241685.1|1816299_1817229_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_009241684.1|1817257_1817749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009241683.1|1817792_1819058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012435759.1|1819388_1820864_+	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase	NA	NA	NA	NA	NA
WP_012435760.1|1821024_1821690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012435761.1|1821958_1822432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012435762.1|1822577_1823156_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
WP_012435763.1|1823255_1824149_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_004637366.1|1824699_1827699_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	26.2	3.7e-80
WP_012430353.1|1827691_1828027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004637351.1|1828192_1829386_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A142KCU7	Gordonia_phage	28.9	1.4e-06
1830209:1830223	attR	CACGCGCGGGTTGGT	NA	NA	NA	NA
>prophage 6
NC_010682	Ralstonia pickettii 12J chromosome 1, complete sequence	3942557	2440846	2450372	3942557		Caulobacter_phage(16.67%)	12	NA	NA
WP_012436149.1|2440846_2442232_+	TROVE domain-containing protein	NA	K4JRQ9	Caulobacter_phage	50.2	9.5e-108
WP_012436150.1|2442233_2442560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012436151.1|2442561_2443047_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_012436152.1|2443049_2443427_+	hypothetical protein	NA	A0A1S6L2W9	Erwinia_phage	68.8	2.5e-42
WP_012436153.1|2443443_2443689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012436155.1|2443900_2444179_+	KTSC domain-containing protein	NA	A9YWW2	Burkholderia_phage	57.8	6.2e-19
WP_012436157.1|2445036_2446668_+	YqaJ viral recombinase family protein	NA	A0A2H4J6F0	uncultured_Caudovirales_phage	46.5	6.0e-93
WP_157042483.1|2446830_2447226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012436159.1|2447356_2447965_+	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_012436160.1|2448018_2448609_+	DUF1566 domain-containing protein	NA	A0A0A0YR68	Pseudomonas_phage	39.6	5.8e-22
WP_012436161.1|2448618_2448990_+	four helix bundle protein	NA	NA	NA	NA	NA
WP_012436162.1|2449190_2450372_+	RNA-directed DNA polymerase	NA	A0A0N7AE80	Bacillus_phage	34.8	2.5e-48
>prophage 7
NC_010682	Ralstonia pickettii 12J chromosome 1, complete sequence	3942557	2649219	2659409	3942557	coat,tRNA	Ralstonia_phage(80.0%)	15	NA	NA
WP_012436185.1|2649219_2649516_-	hypothetical protein	NA	F8WK51	Ralstonia_phage	92.9	2.0e-47
WP_012436186.1|2649652_2649967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012436187.1|2650031_2650325_+	hypothetical protein	NA	B5UAR5	Ralstonia_phage	57.4	3.9e-11
WP_012436188.1|2650324_2650510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012436189.1|2650509_2650659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012436190.1|2650658_2650907_+	hypothetical protein	NA	E5F070	Ralstonia_phage	61.0	9.5e-19
WP_012436191.1|2650903_2651146_+|coat	phage coat protein	coat	NA	NA	NA	NA
WP_012436193.1|2651289_2652744_+	hypothetical protein	NA	Q6UAZ4	Ralstonia_phage	66.3	4.6e-145
WP_012436194.1|2652743_2653061_+	DUF2523 domain-containing protein	NA	E5F073	Ralstonia_phage	80.0	2.9e-36
WP_012436195.1|2653068_2654199_+	zonular occludens toxin	NA	E5F074	Ralstonia_phage	68.3	5.5e-146
WP_012436196.1|2654658_2655543_+	hypothetical protein	NA	A0A097ZIH2	Ralstonia_phage	47.4	5.4e-56
WP_157042477.1|2655551_2655893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012436197.1|2655889_2656480_-	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	88.3	1.5e-91
WP_009241235.1|2656704_2658021_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.3	1.5e-94
WP_009241236.1|2658101_2659409_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.1	5.9e-75
>prophage 8
NC_010682	Ralstonia pickettii 12J chromosome 1, complete sequence	3942557	2966551	2976819	3942557		uncultured_Mediterranean_phage(14.29%)	9	NA	NA
WP_004631699.1|2966551_2968117_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	32.6	5.3e-22
WP_004631694.1|2968113_2968629_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_012436339.1|2968658_2969303_+	deoxynucleoside kinase	NA	A0A249XZR7	Enterococcus_phage	28.8	9.8e-07
WP_012436340.1|2969359_2970178_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	31.0	1.0e-32
WP_004631691.1|2970189_2970897_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012436341.1|2970893_2971592_+	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	26.9	3.4e-13
WP_012436342.1|2971535_2973434_-	chorismate-binding protein	NA	S4VNU7	Pandoravirus	37.4	9.4e-58
WP_004631688.1|2973583_2974732_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	28.3	1.1e-21
WP_012436343.1|2974866_2976819_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.5	1.3e-147
