The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010551	Burkholderia ambifaria MC40-6 chromosome 1, complete sequence	3443583	411014	456572	3443583	transposase,protease,plate	uncultured_Caudovirales_phage(40.0%)	32	NA	NA
WP_012362941.1|411014_411536_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	48.7	3.7e-20
WP_041489745.1|412214_412502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012362944.1|413700_415407_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_012362945.1|415486_416389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012362946.1|416584_425971_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	32.7	9.8e-31
WP_012362947.1|426298_426823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041489893.1|428439_428697_+|transposase	transposase	transposase	A0A218MNI5	uncultured_virus	30.4	6.4e-10
WP_006757125.1|428961_429165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006751250.1|429247_430048_-	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012362948.1|430360_433534_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	28.4	1.7e-56
WP_012362950.1|438244_438649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041489746.1|438756_439923_+	RHS repeat protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	43.6	5.0e-17
WP_041489747.1|440581_440941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041489748.1|440974_441319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012362953.1|442311_442695_+	DUF2750 domain-containing protein	NA	NA	NA	NA	NA
WP_041489749.1|443249_443510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012362955.1|443690_444116_+	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
WP_012362956.1|444236_444488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012362957.1|444481_444817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012362958.1|445209_445518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012362959.1|445534_445789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041489751.1|446160_446460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006751242.1|446553_447336_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_012362961.1|447332_448679_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_012362962.1|448783_449392_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_011655822.1|449768_450407_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_006751238.1|450451_450967_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_006751237.1|450982_452473_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_006477093.1|452543_453047_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_012362963.1|453109_453595_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_012362964.1|453672_455508_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_012362965.1|455471_456572_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 2
NC_010551	Burkholderia ambifaria MC40-6 chromosome 1, complete sequence	3443583	846952	854133	3443583		Enterobacteria_phage(33.33%)	7	NA	NA
WP_012363223.1|846952_848014_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	47.1	1.7e-85
WP_006751098.1|848025_848919_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	59.2	9.8e-98
WP_012363224.1|848903_849455_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.8e-49
WP_012363225.1|849447_850347_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.7	2.5e-24
WP_012363226.1|850670_852119_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	28.8	7.5e-55
WP_012363227.1|852118_852913_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012363228.1|852912_854133_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.0	4.1e-14
>prophage 3
NC_010551	Burkholderia ambifaria MC40-6 chromosome 1, complete sequence	3443583	3321962	3356153	3443583	protease,plate	Erwinia_phage(33.33%)	23	NA	NA
WP_006760749.1|3321962_3322499_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_012364950.1|3322509_3323853_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.7	7.9e-43
WP_011658200.1|3324021_3324564_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012364951.1|3324577_3325984_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_041489871.1|3326135_3326357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006754950.1|3326637_3327537_+	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_012364953.1|3327533_3328325_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_012364954.1|3328291_3328957_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_012364955.1|3329036_3331700_-	type VI secretion system ATPase TssH	NA	A0A1C3S747	Escherichia_phage	43.9	3.9e-57
WP_050772537.1|3332308_3333238_+	TagK domain-containing protein	NA	NA	NA	NA	NA
WP_041489872.1|3333218_3334079_+	ImpE protein	NA	NA	NA	NA	NA
WP_012364958.1|3334062_3334584_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_012364959.1|3334585_3336466_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_012364960.1|3336469_3337531_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_012364961.1|3337527_3338586_+	type VI secretion protein ImpA	NA	NA	NA	NA	NA
WP_012364962.1|3338627_3339659_+	fimbrial protein	NA	NA	NA	NA	NA
WP_012364963.1|3339698_3341054_+	hypothetical protein	NA	A0A292GJ55	Xanthomonas_phage	46.7	3.5e-107
WP_012364964.1|3341167_3344617_-	RHS repeat protein	NA	NA	NA	NA	NA
WP_041489873.1|3348241_3348805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012364968.1|3348785_3349571_-	DUF2094 domain-containing protein	NA	NA	NA	NA	NA
WP_012364969.1|3349579_3353488_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_012364970.1|3353502_3354807_-	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_012364971.1|3354803_3356153_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 1
NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	301592	45190	88792	301592	transposase,integrase	Ralstonia_phage(33.33%)	32	81016:81032	91395:91411
WP_012363394.1|45190_46513_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_012367216.1|46543_47152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367217.1|47165_48380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367218.1|48389_48983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367219.1|48991_50125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367220.1|50121_52389_-	secretion system protein E	NA	NA	NA	NA	NA
WP_012367221.1|52385_53003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367222.1|52956_54288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367223.1|54292_55903_-	type II secretory pathway protein	NA	NA	NA	NA	NA
WP_012367224.1|55908_56439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367225.1|56441_56864_-	lytic transglycosylase domain-containing protein	NA	A0A0K2QQJ4	Ralstonia_phage	39.4	8.6e-12
WP_012367226.1|56860_58147_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA	NA
WP_012367227.1|58143_58953_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_012367228.1|58949_60209_-	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_012367229.1|60218_61100_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA	NA
WP_012367230.1|61096_61813_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_012367231.1|62096_62645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012367232.1|62865_63426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012367233.1|63493_64891_-	replication initiation protein	NA	NA	NA	NA	NA
WP_012367234.1|65688_66897_+	AAA family ATPase	NA	A0A240F4U1	Ochrobactrum_phage	24.9	9.4e-27
WP_012367235.1|66893_67868_+	ParB/RepB/Spo0J family partition protein	NA	S5VTK0	Leptospira_phage	34.1	9.9e-11
WP_012367236.1|68347_70480_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012367238.1|71815_72229_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0A8JBA5	Ralstonia_phage	56.6	3.6e-23
WP_012367239.1|72929_73955_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_041490335.1|78278_78467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041490378.1|79353_80016_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.3	4.3e-26
WP_012367243.1|80049_80940_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	38.5	9.2e-56
WP_012367244.1|80977_82312_-	hypothetical protein	NA	NA	NA	NA	NA
81016:81032	attL	CGAGCGCGGCCGCGTCG	NA	NA	NA	NA
WP_012367245.1|82870_83692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012367246.1|83675_84632_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_050772614.1|84941_85067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012367250.1|87163_88792_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
91395:91411	attR	CGACGCGGCCGCGCTCG	NA	NA	NA	NA
>prophage 2
NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	301592	100887	159879	301592	transposase	Hokovirus(33.33%)	41	NA	NA
WP_012367263.1|100887_101079_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_012367264.1|101182_101761_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	52.9	1.5e-35
WP_041490337.1|102130_102358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041490338.1|103466_103754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490386.1|103781_103886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050772605.1|104408_104870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490339.1|104921_105041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367265.1|105548_106052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490340.1|106079_106193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367266.1|106748_108068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050772606.1|108126_109515_+	hemagglutinin	NA	NA	NA	NA	NA
WP_041490389.1|109641_110346_+	OmpA family protein	NA	NA	NA	NA	NA
WP_041490341.1|110999_111305_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_041490342.1|111401_111749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041490343.1|111784_112930_+	DUF2827 domain-containing protein	NA	NA	NA	NA	NA
WP_012367272.1|112944_114093_+	DUF2827 domain-containing protein	NA	NA	NA	NA	NA
WP_012367273.1|114133_114595_+	DUF4019 domain-containing protein	NA	NA	NA	NA	NA
WP_012367274.1|114676_115039_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_050772607.1|116394_117687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012367277.1|118136_119972_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_050772608.1|122474_122945_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012367281.1|123235_124510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012367282.1|124568_124916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367283.1|125443_126262_-	FkbM family methyltransferase	NA	NA	NA	NA	NA
WP_012367284.1|126467_127064_+	resolvase	NA	A0A219YA40	Aeromonas_phage	47.0	3.9e-34
WP_012367285.1|127068_128190_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012367286.1|128547_129096_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_012367287.1|129175_129928_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA	NA
WP_012367288.1|130036_132691_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_050772610.1|132687_133701_+|transposase	transposase	transposase	H7BW94	unidentified_phage	27.9	5.3e-07
WP_041490398.1|136197_136860_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.3	2.5e-26
WP_012367292.1|137465_138287_+	fimbrial protein TcfA	NA	NA	NA	NA	NA
WP_012367293.1|138290_138791_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA	NA
WP_012367294.1|138869_141572_+	outermembrane fimbrial usher protein	NA	NA	NA	NA	NA
WP_041490345.1|141646_142807_+	minor pilin and initiator	NA	NA	NA	NA	NA
WP_012367297.1|147093_147945_+	DUF1460 domain-containing protein	NA	NA	NA	NA	NA
WP_012367298.1|148869_149586_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012367299.1|149978_152468_+	response regulator	NA	A0A1V0SGX0	Hokovirus	27.3	4.3e-34
WP_041490346.1|152522_154655_-	response regulator	NA	A0A1V0SGX0	Hokovirus	28.7	1.8e-28
WP_050772611.1|158118_158796_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012367302.1|159612_159879_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	301592	192402	242668	301592	plate,integrase	Enterobacteria_phage(25.0%)	59	196984:196999	253461:253476
WP_012367326.1|192402_193464_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_012367327.1|193467_195348_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_012367328.1|195349_195871_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_012367329.1|195854_196715_-	virulence protein SciE type	NA	NA	NA	NA	NA
WP_063822758.1|196695_197625_-	TagK domain-containing protein	NA	NA	NA	NA	NA
196984:196999	attL	GCGGCCGGGGGCGTCG	NA	NA	NA	NA
WP_012367331.1|198228_200898_+	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	32.2	1.8e-86
WP_041490350.1|201064_201244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012367332.1|202459_202663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006752201.1|202907_203204_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_012367334.1|203942_204506_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_041490351.1|204502_204820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490352.1|205117_205516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367336.1|205685_206924_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_012367337.1|206907_207570_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012367338.1|207720_208185_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012367339.1|208987_209893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063822757.1|210225_210954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367342.1|211033_211288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367343.1|211485_212616_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_012367344.1|212687_213113_-	hypothetical protein	NA	A0A1X9SGN6	Bradyrhizobium_phage	47.4	1.6e-26
WP_012367345.1|213419_213638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041490354.1|214123_214309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490355.1|215177_215363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490356.1|215473_215764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041490357.1|216036_216291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041490358.1|216292_216640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490359.1|216686_217016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367351.1|217239_217491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367352.1|217533_217782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367353.1|217794_218277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367354.1|218527_218752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367372.1|219867_220218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490360.1|220684_221065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367362.1|221702_222047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367363.1|222184_222427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367364.1|222439_222859_-	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
WP_012367365.1|222883_223336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367366.1|223442_224180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367367.1|224235_224565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367368.1|224592_225567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490361.1|225580_225949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041490362.1|226111_226930_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_012367371.1|226947_227394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367372.1|228526_228877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367374.1|229121_229442_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_041490363.1|229435_229684_-	antitoxin	NA	NA	NA	NA	NA
WP_041490364.1|229771_230461_-|integrase	site-specific integrase	integrase	A0A1W6DWU1	Sphingobium_phage	29.4	1.7e-12
WP_012367377.1|230633_230960_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_012367378.1|231087_231879_+	DUF159 family protein	NA	NA	NA	NA	NA
WP_012367380.1|232640_233528_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_012367381.1|233531_233879_-	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	30.6	2.8e-08
WP_012367382.1|233980_234946_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_012367383.1|234956_235469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012367384.1|235468_236404_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_012367385.1|236400_237129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063822759.1|237187_237529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367387.1|237624_239577_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012367388.1|239573_241475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012367389.1|241489_242668_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
253461:253476	attR	CGACGCCCCCGGCCGC	NA	NA	NA	NA
