The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	39622	50933	2078953		Synechococcus_phage(33.33%)	7	NA	NA
WP_000668279.1|39622_41776_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	8.0e-45
WP_000801606.1|41788_43138_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043305.1|43307_44015_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.0e-41
WP_000361233.1|44071_47797_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	2.8e-37
WP_000220612.1|47889_49332_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.9	9.7e-55
WP_000182584.1|49368_50391_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	2.1e-64
WP_000717503.1|50387_50933_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	9.7e-24
>prophage 2
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	72226	132799	2078953	tRNA,protease,bacteriocin	Streptococcus_phage(28.57%)	58	NA	NA
WP_001810309.1|72226_77797_+|protease	zinc metalloprotease ZmpC	protease	NA	NA	NA	NA
WP_000220734.1|78152_79007_+	VOC family protein	NA	NA	NA	NA	NA
WP_000200247.1|79112_79670_+	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_000615007.1|79886_80651_+	nucleoside phosphorylase	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	69.0	1.3e-58
WP_000897726.1|81263_82643_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001283896.1|82656_83322_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_001827128.1|83456_83615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771912.1|83676_83850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000291603.1|83916_84327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000671467.1|84442_86104_+	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA	NA
WP_000520642.1|86270_86969_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.0	2.0e-37
WP_000769768.1|86965_88018_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_000092756.1|88212_88824_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_000148253.1|89563_89824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001809441.1|89777_89999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000714587.1|90317_91247_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_001075103.1|91260_92184_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_000800407.1|92393_93869_+	DUF3502 domain-containing protein	NA	NA	NA	NA	NA
WP_001030033.1|94140_95127_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_001140337.1|95248_96109_+	DUF4299 domain-containing protein	NA	NA	NA	NA	NA
WP_000808440.1|96180_97245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001233689.1|97307_98219_-	DUF4097 domain-containing protein	NA	NA	NA	NA	NA
WP_000198681.1|98211_98805_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000273863.1|98791_99118_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000744900.1|99256_100423_-	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_000096202.1|100480_101638_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_001035702.1|101679_103530_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	30.1	2.2e-27
WP_000200892.1|103924_104557_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000500038.1|104578_105451_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
WP_000838912.1|105459_106131_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA	NA
WP_000836442.1|106371_106959_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A288TY55	Enterococcus_phage	56.2	1.7e-26
WP_001189272.1|107009_107330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001230164.1|107754_108042_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000724263.1|108093_110202_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571324.1|110198_110840_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	3.7e-22
WP_001038474.1|111046_111853_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_128887622.1|111818_112289_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001189290.1|112576_112897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424436.1|113660_114014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012512629.1|114010_114739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000909532.1|114892_115105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000356082.1|115584_115830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012512647.1|115986_117045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001842000.1|117358_118333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424474.1|118806_119181_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000619761.1|119388_120291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424428.1|120346_120700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072906.1|120696_121425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770321.1|122560_122809_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	52.7	2.9e-15
WP_033627138.1|122798_123077_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	52.7	1.3e-21
WP_001035302.1|123362_125492_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282995.1|125892_127014_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193608.1|127154_127610_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220953.1|127619_129533_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331983.1|129727_131407_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639577.1|131408_131642_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000974047.1|132459_132612_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|132613_132799_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
>prophage 3
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	264376	319853	2078953	protease,integrase,transposase	Streptococcus_phage(25.0%)	55	255091:255110	296090:296109
255091:255110	attL	GATAGAACTGACGAAGTCAG	NA	NA	NA	NA
WP_000660437.1|264376_265084_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000975721.1|265178_266153_+	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_000658414.1|266154_267477_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_000380916.1|267457_268012_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	44.3	9.8e-40
WP_000372531.1|268054_268867_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_000886031.1|268911_269229_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_000075973.1|270049_270442_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_001211071.1|270702_271125_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000050748.1|271271_271448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688703.1|271848_274062_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_000203063.1|274283_274760_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_001193705.1|274982_278186_+	LPXTG-anchored hyaluronate lyase	NA	NA	NA	NA	NA
WP_000167294.1|279302_279932_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_000161481.1|279941_280943_-	sugar kinase	NA	NA	NA	NA	NA
WP_000684786.1|280973_281615_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA	NA
WP_000185876.1|281633_282449_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000706836.1|282719_283148_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000592938.1|283159_284350_+	glycoside hydrolase family 88 protein	NA	NA	NA	NA	NA
WP_000178620.1|284360_284852_+	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_000026613.1|284866_285646_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_000148012.1|285632_286451_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_000381736.1|286450_286744_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_000657050.1|286765_288667_+	alginate lyase family protein	NA	NA	NA	NA	NA
WP_000412453.1|288726_289728_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000838117.1|289837_290173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000711739.1|290183_290426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000712354.1|290436_290979_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_001082472.1|290994_291189_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	9.4e-06
WP_000159396.1|291354_292305_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_000818547.1|292316_292634_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_000872287.1|292637_294890_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
WP_000470815.1|294891_295872_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_001063383.1|296480_298586_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.7	2.0e-117
296090:296109	attR	GATAGAACTGACGAAGTCAG	NA	NA	NA	NA
WP_000032550.1|298881_299364_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743615.1|299458_300943_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_001156798.1|301095_302703_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_001022229.1|302861_303035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000091078.1|303774_305220_+	capsular polysaccharide biosynthesis protein Cps4A	NA	A0A1X9I5X1	Streptococcus_phage	60.3	2.1e-134
WP_000565356.1|305221_305953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000664167.1|305961_306654_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	55.5	1.6e-60
WP_001142523.1|306663_307347_+	polysaccharide biosynthesis tyrosine autokinase CpsD	NA	A0A1X9I5D6	Streptococcus_phage	60.5	6.6e-70
WP_000343585.1|307362_308730_+	sugar transferase	NA	NA	NA	NA	NA
WP_001205625.1|308733_309477_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_001076785.1|309473_310298_+	LicD family protein	NA	A0A1V0SD50	Indivirus	38.7	1.8e-05
WP_000458863.1|310299_311178_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000120851.1|311178_312516_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA	NA
WP_001092841.1|312538_313960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000723326.1|314023_315112_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	30.3	1.0e-27
WP_000676141.1|315150_316020_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	62.8	2.0e-100
WP_000131456.1|316020_316617_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
WP_000141499.1|316626_317676_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
WP_000600900.1|317741_318593_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.8	3.0e-27
WP_000272533.1|318655_319102_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001818890.1|319411_319624_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001809483.1|319694_319853_+|transposase	transposase domain-containing protein	transposase	NA	NA	NA	NA
>prophage 4
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	416340	479890	2078953	tRNA,bacteriocin,transposase	Bacillus_phage(22.22%)	55	NA	NA
WP_001809505.1|416340_416511_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000628998.1|417325_418549_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_001059632.1|418716_420039_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_000236924.1|420040_420235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012512661.1|420287_421928_+	DUF4838 domain-containing protein	NA	NA	NA	NA	NA
WP_000836780.1|422095_422440_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000429428.1|422449_423862_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
WP_000359748.1|423930_425610_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_012512653.1|425734_427174_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000691692.1|427177_428527_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_001063601.1|428715_429564_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403170.1|429578_430127_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000692856.1|430133_430346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000656545.1|430447_432130_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	7.7e-19
WP_001148103.1|432114_432945_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181372.1|433137_433641_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185828.1|434093_434657_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000678710.1|434670_435297_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867297.1|435324_435714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333646.1|435718_436168_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|436295_436883_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105232.1|437272_438880_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	2.0e-141
WP_000026636.1|439438_441070_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_001096751.1|446431_447628_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119905.1|449497_450025_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|450101_450458_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_001122904.1|450494_451841_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|451936_452056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410535.1|452020_452170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078377072.1|452601_453921_+	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	25.6	8.4e-13
WP_000029056.1|455425_456889_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229096.1|456901_459235_-	DEAD/DEAH box helicase family protein	NA	Q5YA94	Bacillus_phage	27.9	4.5e-25
WP_000550236.1|459913_460351_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255768.1|460514_461549_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|461575_462100_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034679.1|462579_464403_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	3.5e-134
WP_000343113.1|464413_464818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066295.1|465032_466169_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
WP_014931964.1|466197_466374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777753.1|466535_466823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278329.1|466832_467243_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	35.6	4.4e-05
WP_000889958.1|467310_468042_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	5.3e-25
WP_000653771.1|468038_469088_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132574.1|469255_469585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000876675.1|469861_470200_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219154.1|470204_470942_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001017637.1|470955_472296_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358815.1|472366_472495_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069084.1|472551_473913_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_000205169.1|473923_476077_-	peptide cleavage/export ABC transporter BlpA	NA	W8CYL7	Bacillus_phage	27.7	1.4e-41
WP_001093272.1|476357_476561_+|bacteriocin	bacteriocin class II family protein	bacteriocin	NA	NA	NA	NA
WP_000411016.1|476878_477082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000379882.1|479023_479278_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_001099494.1|479293_479497_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
WP_001818346.1|479740_479890_+|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
>prophage 5
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	831518	841161	2078953	holin	Streptococcus_phage(87.5%)	10	NA	NA
WP_000728272.1|831518_833402_+|holin	phosphorylcholine esterase CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
WP_000254694.1|834622_835885_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	3.8e-140
WP_000689697.1|835888_836686_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	49.8	7.2e-60
WP_000033362.1|836905_837544_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	9.8e-76
WP_000806709.1|837540_838431_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	8.3e-73
WP_000358228.1|838470_838788_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166902.1|838790_839660_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.4	6.6e-115
WP_001261454.1|839886_840405_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_001826548.1|840513_840651_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_012512681.1|840657_841161_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	40.0	4.0e-08
>prophage 6
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	1106631	1169886	2078953	holin,protease,transposase	Indivirus(20.0%)	57	NA	NA
WP_000792121.1|1106631_1107585_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000726277.1|1107757_1109923_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA	NA
WP_001096316.1|1109922_1110663_+	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	3.7e-18
WP_000096129.1|1110811_1112299_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	33.0	2.2e-70
WP_000522324.1|1112344_1113622_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_000763459.1|1113625_1114444_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000153022.1|1114443_1115238_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000280932.1|1115234_1118774_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_000661507.1|1118764_1119463_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	3.0e-25
WP_000931167.1|1119780_1120767_-	GMP reductase	NA	G3MBI2	Bacillus_virus	71.9	1.2e-136
WP_000445170.1|1120941_1122168_-	McrC family protein	NA	NA	NA	NA	NA
WP_001810980.1|1124341_1124503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001826580.1|1124492_1124666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000199865.1|1124765_1124909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000929145.1|1125127_1125487_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_000762437.1|1125490_1125760_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_001010960.1|1126805_1127900_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_000461588.1|1127918_1128575_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_001237219.1|1129344_1129704_-	YbaN family protein	NA	NA	NA	NA	NA
WP_000179638.1|1129809_1131897_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.6	3.9e-105
WP_001812883.1|1132063_1133107_-	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_000705306.1|1133990_1134839_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
WP_000643970.1|1134924_1135614_-	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000837613.1|1135625_1136504_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000411214.1|1136493_1137363_-|holin	choline kinase LicA	holin	NA	NA	NA	NA
WP_000609920.1|1137379_1138402_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000638502.1|1138406_1139114_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000835914.1|1139449_1140937_+	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000811998.1|1140946_1141750_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	4.0e-10
WP_001199646.1|1141751_1142561_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	4.5e-09
WP_001126436.1|1142836_1146013_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166702.1|1146325_1147405_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	8.3e-59
WP_001293831.1|1147454_1148378_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.0	6.0e-26
WP_000850024.1|1148396_1148918_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244458.1|1149127_1149757_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773237.1|1149756_1150299_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000558896.1|1151023_1152583_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	9.3e-11
WP_000895733.1|1152731_1153631_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_000219847.1|1153632_1154193_-	LemA family protein	NA	NA	NA	NA	NA
WP_000802934.1|1154286_1155000_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_001809228.1|1155253_1156537_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.3	1.8e-60
WP_000863633.1|1156731_1158303_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000402067.1|1158314_1158647_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_001842019.1|1158737_1159115_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_001003474.1|1159186_1160491_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.5	7.7e-27
WP_000023512.1|1160503_1161310_+	sugar-phosphatase	NA	NA	NA	NA	NA
WP_001068669.1|1161479_1161827_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000237416.1|1161945_1162275_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	6.3e-10
WP_000712093.1|1162268_1162643_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_000362438.1|1162639_1162906_-	chorismate mutase	NA	NA	NA	NA	NA
WP_001162131.1|1163021_1163465_-	flavodoxin	NA	NA	NA	NA	NA
WP_000401772.1|1163568_1164504_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_001808393.1|1164557_1164842_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000028151.1|1164898_1165117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000199560.1|1166201_1167548_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000711943.1|1168053_1168224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001811052.1|1169727_1169886_-|transposase	transposase domain-containing protein	transposase	NA	NA	NA	NA
>prophage 7
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	1192416	1208960	2078953		Streptococcus_phage(92.31%)	16	NA	NA
WP_000691743.1|1192416_1194336_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A2K5B2A5	Erysipelothrix_phage	97.8	0.0e+00
WP_001814923.1|1194351_1194468_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224320.1|1194712_1195648_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_000769872.1|1195644_1196646_-	bifunctional lysozyme/C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	99.7	1.4e-190
WP_041170934.1|1196642_1198820_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	99.9	0.0e+00
WP_000331160.1|1198822_1201270_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|1201253_1201760_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|1201734_1202232_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1202348_1202570_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_001038795.1|1204239_1204977_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	3.1e-134
WP_001814874.1|1205101_1205185_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001815707.1|1205233_1206652_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	1.5e-233
WP_000879507.1|1206674_1206827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813493.1|1206829_1208215_-	hypothetical protein	NA	A0A1S5SFB5	Streptococcus_phage	99.8	7.2e-265
WP_000985015.1|1208243_1208630_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420683.1|1208645_1208960_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	99.0	2.6e-53
>prophage 8
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	1249642	1300147	2078953	holin,tRNA,protease,bacteriocin	Streptococcus_phage(38.46%)	49	NA	NA
WP_000623394.1|1249642_1250275_-|bacteriocin	putative bacteriocin export ABC transporter	bacteriocin	G3M9Y6	Bacillus_virus	32.5	8.9e-21
WP_000825230.1|1250276_1252286_-	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
WP_050199870.1|1252347_1252644_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000222719.1|1253746_1254382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000821296.1|1254671_1255259_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000840780.1|1255261_1255495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000566526.1|1255507_1255888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000645879.1|1255880_1256330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001210968.1|1256313_1257672_-	DNA (cytosine-5-)-methyltransferase	NA	A0A141E1L1	Streptococcus_phage	56.5	1.5e-129
WP_000822760.1|1257770_1258550_-	replication initiator protein A	NA	A0A286QNA4	Streptococcus_phage	31.2	3.0e-10
WP_000159607.1|1258546_1258720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196960.1|1258921_1259290_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_001287280.1|1259365_1259866_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_187146209.1|1260115_1261375_-	TRZ/ATZ family protein	NA	NA	NA	NA	NA
WP_000828857.1|1261766_1263515_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.7	7.4e-49
WP_000681704.1|1263516_1265241_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.7	2.7e-43
WP_000818203.1|1265298_1266237_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000692438.1|1266486_1267356_-	homoserine kinase	NA	NA	NA	NA	NA
WP_000216377.1|1267357_1268644_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_000782680.1|1268794_1269532_-	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000461498.1|1269731_1270766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000565082.1|1270794_1272228_-	O-antigen polysaccharide polymerase Wzy family protein	NA	NA	NA	NA	NA
WP_000446969.1|1272243_1273230_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000225894.1|1273231_1274335_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_001062001.1|1274324_1275170_-|holin	phosphorylcholine transferase LicD	holin	NA	NA	NA	NA
WP_000032358.1|1275448_1276723_-	polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase Psr	NA	NA	NA	NA	NA
WP_000686399.1|1276719_1277568_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001151373.1|1277564_1278041_-	shikimate kinase	NA	NA	NA	NA	NA
WP_001810470.1|1278033_1279317_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000065990.1|1279408_1279747_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	51.8	6.4e-26
WP_001140482.1|1279757_1280861_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001269869.1|1280870_1282037_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.9	1.0e-38
WP_000702174.1|1282046_1283114_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000762475.1|1283132_1283987_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_000767754.1|1283976_1284654_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	67.3	6.7e-83
WP_012512698.1|1284650_1285814_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	63.8	1.9e-138
WP_001237564.1|1286497_1288132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000569209.1|1288112_1288862_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	8.9e-28
WP_001181061.1|1289040_1290495_+	alpha-amylase	NA	NA	NA	NA	NA
WP_000811775.1|1290584_1293203_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.8	3.7e-60
WP_000847055.1|1293224_1293710_-	LURP-one-related family protein	NA	NA	NA	NA	NA
WP_000784180.1|1293984_1294224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000725682.1|1294492_1295563_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000712728.1|1295559_1296333_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000753801.1|1296329_1297136_-	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	26.5	2.5e-12
WP_000742915.1|1297116_1298274_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	40.4	7.6e-34
WP_000116191.1|1298331_1299282_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_167549005.1|1299393_1299921_-|protease	YhfC family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001810468.1|1299955_1300147_-|protease	YhfC family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 9
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	1340737	1347745	2078953		Streptococcus_phage(42.86%)	10	NA	NA
WP_012512621.1|1340737_1341454_-	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	31.1	1.2e-26
WP_001272945.1|1341966_1342578_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855754.1|1342622_1343351_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272304.1|1343389_1344301_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
WP_000926600.1|1344366_1344591_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590969.1|1344668_1345412_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_001103450.1|1345411_1346212_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1346369_1346726_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170346.1|1346738_1347251_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
WP_000405822.1|1347250_1347745_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.1e-42
>prophage 10
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	1436784	1443538	2078953	protease	Streptococcus_phage(50.0%)	8	NA	NA
WP_000081042.1|1436784_1437753_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_000011307.1|1437786_1438698_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.3	9.8e-154
WP_001231086.1|1438694_1439672_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000163035.1|1439668_1440559_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
WP_001140412.1|1440610_1440991_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1441001_1441589_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106349.1|1441597_1442830_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	5.4e-131
WP_000162482.1|1443031_1443538_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	6.7e-27
>prophage 11
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	1688342	1695674	2078953		uncultured_Mediterranean_phage(33.33%)	10	NA	NA
WP_000167836.1|1688342_1689044_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.1	1.0e-33
WP_000777236.1|1689466_1690426_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.5	5.3e-57
WP_001193669.1|1690415_1691372_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764306.1|1691368_1692121_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.9	5.6e-14
WP_000858260.1|1692216_1693182_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001842220.1|1693209_1693326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821640.1|1693406_1693649_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
WP_001222228.1|1693648_1694371_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1694357_1694927_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351906.1|1694945_1695674_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	4.1e-09
>prophage 12
NC_011072	Streptococcus pneumoniae G54, complete sequence	2078953	2056806	2065560	2078953		Staphylococcus_phage(33.33%)	9	NA	NA
WP_000510412.1|2056806_2057646_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.1e-13
WP_000835720.1|2057630_2058458_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	29.1	3.9e-16
WP_000712132.1|2058454_2059000_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227959.1|2059010_2059832_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170184.1|2059873_2061157_-	insulinase family protein	NA	A0A0G2Y5U8	Acanthamoeba_polyphaga_mimivirus	31.0	1.6e-16
WP_000424271.1|2061153_2062404_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
WP_000455903.1|2062562_2062931_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266667.1|2062933_2064031_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073434.1|2064081_2065560_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	1.1e-93
