assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	1	1016299-1017121	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCGN	29,29,30	0	0	NA	NA	I-E:I-E:I-E	12,12,13	13	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|919aa|up_9|NC_010468.1_1002892_1005649_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NC_010468.1_1005705_1007007_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NC_010468.1_1007054_1009289_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NC_010468.1_1009366_1009615_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NC_010468.1_1009614_1009950_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NC_010468.1_1010020_1010812_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NC_010468.1_1011039_1012677_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NC_010468.1_1012764_1014063_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NC_010468.1_1014122_1014995_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NC_010468.1_1015288_1015960_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|down_0|NC_010468.1_1017270_1018383_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_1|NC_010468.1_1020024_1021503_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_2|NC_010468.1_1021529_1022807_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_3|NC_010468.1_1023125_1023911_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|NC_010468.1_1023980_1025435_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_5|NC_010468.1_1025456_1026866_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NC_010468.1_1026843_1027623_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NC_010468.1_1027619_1028480_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NC_010468.1_1028627_1029203_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NC_010468.1_1029219_1029480_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	2	1018443-1019386	2,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas3	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,27,27	0	0	NA	NA	I-E:I-E:I-E	15,15,15	15	Unclear	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|434aa|up_9|NC_010468.1_1005705_1007007_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NC_010468.1_1007054_1009289_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NC_010468.1_1009366_1009615_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NC_010468.1_1009614_1009950_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NC_010468.1_1010020_1010812_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NC_010468.1_1011039_1012677_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NC_010468.1_1012764_1014063_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NC_010468.1_1014122_1014995_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_1|NC_010468.1_1015288_1015960_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|up_0|NC_010468.1_1017270_1018383_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_0|NC_010468.1_1020024_1021503_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NC_010468.1_1021529_1022807_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NC_010468.1_1023125_1023911_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NC_010468.1_1023980_1025435_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NC_010468.1_1025456_1026866_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NC_010468.1_1026843_1027623_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NC_010468.1_1027619_1028480_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NC_010468.1_1028627_1029203_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NC_010468.1_1029219_1029480_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NC_010468.1_1029470_1030742_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	3	1044936-1046245	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,21,21	21	TypeI-E	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|571aa|up_9|NC_010468.1_1033299_1035012_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NC_010468.1_1035086_1035821_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NC_010468.1_1036179_1038846_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NC_010468.1_1039260_1040769_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NC_010468.1_1040761_1041244_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NC_010468.1_1041256_1042348_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NC_010468.1_1042350_1043025_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NC_010468.1_1043011_1043611_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NC_010468.1_1043626_1044544_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NC_010468.1_1044545_1044830_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NC_010468.1_1046265_1047303_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NC_010468.1_1047554_1048463_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NC_010468.1_1048464_1049892_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NC_010468.1_1049891_1050497_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NC_010468.1_1050546_1050870_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NC_010468.1_1051063_1051375_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NC_010468.1_1051393_1052104_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NC_010468.1_1052103_1052583_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NC_010468.1_1052579_1053629_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NC_010468.1_1053609_1054371_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	4	1549233-1549350	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|62aa|up_9|NC_010468.1_1538518_1538704_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NC_010468.1_1538716_1539616_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NC_010468.1_1539808_1540999_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NC_010468.1_1540995_1542255_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NC_010468.1_1542244_1543873_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NC_010468.1_1544145_1545504_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NC_010468.1_1545508_1546585_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NC_010468.1_1547047_1547698_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NC_010468.1_1547751_1548006_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NC_010468.1_1548005_1549136_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NC_010468.1_1549369_1551655_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NC_010468.1_1552350_1556103_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NC_010468.1_1556230_1556953_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NC_010468.1_1557099_1559727_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NC_010468.1_1559875_1561564_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NC_010468.1_1561560_1562184_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1505aa|down_6|NC_010468.1_1562207_1566722_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NC_010468.1_1566722_1568372_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NC_010468.1_1568376_1569153_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NC_010468.1_1569226_1570411_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	5	2841510-2841601	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA|70aa|up_9|NC_010468.1_2830584_2830794_-,NA	NA|70aa|up_9|NC_010468.1_2830584_2830794_-	NA	NA|1321aa|up_8|NC_010468.1_2830848_2834811_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NC_010468.1_2834850_2835489_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NC_010468.1_2835777_2836869_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NC_010468.1_2836868_2837561_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NC_010468.1_2837572_2837959_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NC_010468.1_2837966_2838767_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NC_010468.1_2838776_2839367_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NC_010468.1_2839377_2839872_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NC_010468.1_2839892_2841221_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NC_010468.1_2842024_2842621_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NC_010468.1_2842641_2842869_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NC_010468.1_2843088_2844330_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NC_010468.1_2844622_2845879_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NC_010468.1_2846139_2847060_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NC_010468.1_2847059_2847365_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NC_010468.1_2847516_2848116_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NC_010468.1_2848112_2850659_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NC_010468.1_2850658_2851831_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NC_010468.1_2851960_2852653_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	6	2984513-2984718	6,4,4	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|431aa|up_9|NC_010468.1_2969637_2970930_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NC_010468.1_2971020_2972364_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NC_010468.1_2972374_2972986_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NC_010468.1_2973140_2977130_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NC_010468.1_2977264_2977759_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NC_010468.1_2978303_2979269_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NC_010468.1_2979391_2981158_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NC_010468.1_2981158_2982880_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NC_010468.1_2982921_2983626_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NC_010468.1_2983910_2984129_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|107aa|down_0|NC_010468.1_2988010_2988331_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_1|NC_010468.1_2988653_2988878_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_2|NC_010468.1_2988950_2990897_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_3|NC_010468.1_2990893_2992009_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_4|NC_010468.1_2992159_2993116_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_5|NC_010468.1_2993112_2994771_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_6|NC_010468.1_2995195_2995891_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_7|NC_010468.1_2996385_2997285_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|NC_010468.1_2997428_2999081_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|NC_010468.1_2999092_3000061_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	7	3149635-3149779	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA|72aa|up_8|NC_010468.1_3143051_3143267_+,NA|205aa|up_5|NC_010468.1_3144891_3145506_+,NA|56aa|up_3|NC_010468.1_3146677_3146845_+,NA	NA|64aa|up_9|NC_010468.1_3142783_3142975_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|72aa|up_8|NC_010468.1_3143051_3143267_+	NA	NA|74aa|up_7|NC_010468.1_3143365_3143587_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|84aa|up_6|NC_010468.1_3143583_3143835_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|205aa|up_5|NC_010468.1_3144891_3145506_+	NA	NA|143aa|up_4|NC_010468.1_3146166_3146595_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|NC_010468.1_3146677_3146845_+	NA	NA|73aa|up_2|NC_010468.1_3146884_3147103_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NC_010468.1_3147080_3148151_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NC_010468.1_3148285_3149569_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NC_010468.1_3149802_3152064_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NC_010468.1_3152246_3153680_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NC_010468.1_3153755_3154808_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NC_010468.1_3154991_3155945_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NC_010468.1_3155985_3156981_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NC_010468.1_3157135_3157954_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NC_010468.1_3157954_3159013_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NC_010468.1_3159015_3159705_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NC_010468.1_3159704_3160478_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NC_010468.1_3160644_3160794_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	8	3548423-3548567	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA|28aa|down_2|NC_010468.1_3550612_3550696_-	NA|357aa|up_9|NC_010468.1_3533564_3534635_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NC_010468.1_3534727_3535309_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NC_010468.1_3535313_3537131_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NC_010468.1_3537286_3538660_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NC_010468.1_3538735_3540055_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NC_010468.1_3540461_3541757_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NC_010468.1_3541814_3542504_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NC_010468.1_3542693_3543896_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1048aa|up_1|NC_010468.1_3543892_3547036_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NC_010468.1_3547161_3548346_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NC_010468.1_3548590_3549499_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NC_010468.1_3549623_3550535_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NC_010468.1_3550612_3550696_-	NA	NA|95aa|down_3|NC_010468.1_3551181_3551466_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NC_010468.1_3551537_3552215_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NC_010468.1_3552472_3552664_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NC_010468.1_3552713_3553238_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NC_010468.1_3553414_3553879_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NC_010468.1_3553998_3554808_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NC_010468.1_3554824_3555940_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	9	3711118-3711214	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|549aa|up_9|NC_010468.1_3701392_3703039_-	PRK07193, fliF, flagellar MS-ring protein; Reviewed	NA|114aa|up_8|NC_010468.1_3703043_3703385_-	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|329aa|up_7|NC_010468.1_3703399_3704386_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|284aa|up_6|NC_010468.1_3704772_3705624_+	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|124aa|up_5|NC_010468.1_3705616_3705988_+	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|251aa|up_4|NC_010468.1_3705984_3706737_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|91aa|up_3|NC_010468.1_3706739_3707012_+	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|261aa|up_2|NC_010468.1_3707013_3707796_+	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|up_1|NC_010468.1_3707785_3708925_+	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|698aa|up_0|NC_010468.1_3708908_3711002_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NC_010468.1_3711217_3711715_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NC_010468.1_3711890_3712664_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NC_010468.1_3712849_3713110_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NC_010468.1_3713112_3713391_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NC_010468.1_3713546_3714287_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NC_010468.1_3714257_3715025_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NC_010468.1_3715230_3715809_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NC_010468.1_3716048_3718493_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NC_010468.1_3718535_3719009_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NC_010468.1_3719162_3719933_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_000019385.1_ASM1938v1	NC_010468	Escherichia coli ATCC 8739, complete sequence	10	3869763-3869894	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	AATGCAGACTAACCCGCAGATCCAGCAGCGAAGAGA	36	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|309aa|up_9|NC_010468.1_3855877_3856804_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|221aa|up_8|NC_010468.1_3856912_3857575_+	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|179aa|up_7|NC_010468.1_3857615_3858152_-	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|797aa|up_6|NC_010468.1_3858357_3860748_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|517aa|up_5|NC_010468.1_3860949_3862500_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|up_4|NC_010468.1_3862665_3863013_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|289aa|up_3|NC_010468.1_3863118_3863985_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|265aa|up_2|NC_010468.1_3864000_3864795_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|121aa|up_1|NC_010468.1_3864831_3865194_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_0|NC_010468.1_3865368_3867966_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|475aa|down_0|NC_010468.1_3870244_3871669_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|631aa|down_1|NC_010468.1_3871993_3873886_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|888aa|down_2|NC_010468.1_3873900_3876564_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|255aa|down_3|NC_010468.1_3876724_3877489_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|458aa|down_4|NC_010468.1_3878029_3879403_+	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|285aa|down_5|NC_010468.1_3879445_3880300_-	pfam17113, AmpE, Regulatory signalling modulator protein AmpE	NA|184aa|down_6|NC_010468.1_3880296_3880848_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|298aa|down_7|NC_010468.1_3880935_3881829_+	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|147aa|down_8|NC_010468.1_3882031_3882472_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|462aa|down_9|NC_010468.1_3882481_3883867_+	PRK10436, PRK10436, hypothetical protein; Provisional
