assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000019045.1_ASM1904v1	NC_011567	Anoxybacillus flavithermus WK1, complete sequence	1	293815-293988	1,1	PILER-CR,CRISPRCasFinder	no		cas3,Cas14u_CAS-V,c2c9_V-U4,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,csa3,DEDDh,cas14j,c2c10_CAS-V-U3,RT,cas14k	Orphan	CACTTTTTTGACGTTTGTATCGTACCTATGAGGAATTGAAACT,ACGTTTGTATCGTACCTATGAGGAATTGAAAC	43,32	0	0	NA	NA	NA:NA	2,2	2	Orphan	cas3,Cas14u_CAS-V,c2c9_V-U4,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,csa3,DEDDh,cas14j,c2c10_CAS-V-U3,RT,cas14k	NA,NA	NA|571aa|up_9|NC_011567.1_280949_282662_-	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism]	NA|97aa|up_8|NC_011567.1_283221_283512_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|486aa|up_7|NC_011567.1_283524_284982_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|477aa|up_6|NC_011567.1_284996_286427_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|192aa|up_5|NC_011567.1_286443_287019_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|85aa|up_4|NC_011567.1_287552_287807_+	pfam00486, Trans_reg_C, Transcriptional regulatory protein, C terminal	NA|163aa|up_3|NC_011567.1_287952_288441_+	TIGR04511, SagB_rel_DH_2, putative peptide maturation dehydrogenase	NA|232aa|up_2|NC_011567.1_288953_289649_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|104aa|up_1|NC_011567.1_289638_289950_+	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|145aa|up_0|NC_011567.1_292596_293031_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|494aa|down_0|NC_011567.1_294483_295965_+	pfam09660, DUF2397, Protein of unknown function (DUF2397)	NA|389aa|down_1|NC_011567.1_295978_297145_+	pfam09661, DUF2398, Protein of unknown function (DUF2398)	NA|1379aa|down_2|NC_011567.1_297134_301271_+	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein	NA|412aa|down_3|NC_011567.1_301254_302490_+	TIGR02679, conserved_hypothetical_protein, TIGR02679 family protein	NA|450aa|down_4|NC_011567.1_302494_303844_+	cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like	NA|324aa|down_5|NC_011567.1_304204_305176_+	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|659aa|down_6|NC_011567.1_305165_307142_+	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|202aa|down_7|NC_011567.1_307131_307737_+	cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily	NA|100aa|down_8|NC_011567.1_307737_308037_+	TIGR02901, cytochrome_aa3_quinol_oxidase_subunit_IV, cytochrome aa3 quinol oxidase, subunit IV	NA|503aa|down_9|NC_011567.1_308138_309647_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
GCF_000019045.1_ASM1904v1	NC_011567	Anoxybacillus flavithermus WK1, complete sequence	2	804177-809818	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	Cas14u_CAS-V,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	cas3,Cas14u_CAS-V,c2c9_V-U4,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,csa3,DEDDh,cas14j,c2c10_CAS-V-U3,RT,cas14k	Unclear	GTTTTATCTGAACGTAGTGGGATGTAAAG,GTTTTATCTGAACGTAGTGGGATGTAAAG,GTTTTATCTGAACGTAGTGGGATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	85,85,85	85	Unclear	cas3,Cas14u_CAS-V,c2c9_V-U4,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,csa3,DEDDh,cas14j,c2c10_CAS-V-U3,RT,cas14k	NA,NA|188aa|down_0|NC_011567.1_809988_810552_+,NA|77aa|down_8|NC_011567.1_820298_820529_+,NA|86aa|down_9|NC_011567.1_820550_820808_+	NA|86aa|up_9|NC_011567.1_794303_794561_+	pfam14143, YrhC, YrhC-like protein	NA|208aa|up_8|NC_011567.1_795078_795702_-	smart00318, SNc, Staphylococcal nuclease homologues	cas6|243aa|up_7|NC_011567.1_795949_796678_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b2|592aa|up_6|NC_011567.1_796674_798450_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|296aa|up_5|NC_011567.1_798446_799334_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|234aa|up_4|NC_011567.1_799336_800038_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|726aa|up_3|NC_011567.1_800049_802227_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|166aa|up_2|NC_011567.1_802241_802739_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|328aa|up_1|NC_011567.1_802738_803722_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|NC_011567.1_803723_803987_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|188aa|down_0|NC_011567.1_809988_810552_+	NA	NA|267aa|down_1|NC_011567.1_811933_812734_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|254aa|down_2|NC_011567.1_816990_817752_+	pfam14358, DUF4405, Domain of unknown function (DUF4405)	NA|122aa|down_3|NC_011567.1_817799_818165_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|166aa|down_4|NC_011567.1_818211_818709_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|253aa|down_5|NC_011567.1_818808_819567_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|109aa|down_6|NC_011567.1_819568_819895_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|75aa|down_7|NC_011567.1_820053_820278_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|77aa|down_8|NC_011567.1_820298_820529_+	NA	NA|86aa|down_9|NC_011567.1_820550_820808_+	NA
GCF_000019045.1_ASM1904v1	NC_011567	Anoxybacillus flavithermus WK1, complete sequence	3	812915-816909	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	cas3,Cas14u_CAS-V,c2c9_V-U4,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,csa3,DEDDh,cas14j,c2c10_CAS-V-U3,RT,cas14k	Unclear	GTTTTATCTGAACGTAGTGGGATGTAAAG,GTTTTATCTGAACGTAGTGGGATGTAAAG,GTTTTATCTGAACGTAGTGGGATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	59,60,60	60	Unclear	cas3,Cas14u_CAS-V,c2c9_V-U4,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,csa3,DEDDh,cas14j,c2c10_CAS-V-U3,RT,cas14k	NA|188aa|up_1|NC_011567.1_809988_810552_+,NA|77aa|down_6|NC_011567.1_820298_820529_+,NA|86aa|down_7|NC_011567.1_820550_820808_+,NA|76aa|down_8|NC_011567.1_821085_821313_+	cas6|243aa|up_9|NC_011567.1_795949_796678_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b2|592aa|up_8|NC_011567.1_796674_798450_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|296aa|up_7|NC_011567.1_798446_799334_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|234aa|up_6|NC_011567.1_799336_800038_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|726aa|up_5|NC_011567.1_800049_802227_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|166aa|up_4|NC_011567.1_802241_802739_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|328aa|up_3|NC_011567.1_802738_803722_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_2|NC_011567.1_803723_803987_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|188aa|up_1|NC_011567.1_809988_810552_+	NA	NA|267aa|up_0|NC_011567.1_811933_812734_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|254aa|down_0|NC_011567.1_816990_817752_+	pfam14358, DUF4405, Domain of unknown function (DUF4405)	NA|122aa|down_1|NC_011567.1_817799_818165_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|166aa|down_2|NC_011567.1_818211_818709_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|253aa|down_3|NC_011567.1_818808_819567_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|109aa|down_4|NC_011567.1_819568_819895_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|75aa|down_5|NC_011567.1_820053_820278_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|77aa|down_6|NC_011567.1_820298_820529_+	NA	NA|86aa|down_7|NC_011567.1_820550_820808_+	NA	NA|76aa|down_8|NC_011567.1_821085_821313_+	NA	NA|766aa|down_9|NC_011567.1_821322_823620_+	PRK07078, PRK07078, hypothetical protein; Validated
GCF_000019045.1_ASM1904v1	NC_011567	Anoxybacillus flavithermus WK1, complete sequence	4	1638884-1638968	4	CRISPRCasFinder	no		cas3,Cas14u_CAS-V,c2c9_V-U4,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,csa3,DEDDh,cas14j,c2c10_CAS-V-U3,RT,cas14k	Orphan	TTTTCCCCGCTACCGTTTAGGCAGGGCTGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,Cas14u_CAS-V,c2c9_V-U4,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,csa3,DEDDh,cas14j,c2c10_CAS-V-U3,RT,cas14k	NA,NA|50aa|down_0|NC_011567.1_1639537_1639687_-,NA|58aa|down_3|NC_011567.1_1643269_1643443_-	NA|165aa|up_9|NC_011567.1_1624158_1624653_+	cd18738, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|103aa|up_8|NC_011567.1_1625026_1625335_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|656aa|up_7|NC_011567.1_1626447_1628415_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|437aa|up_6|NC_011567.1_1628809_1630120_-	pfam13034, DUF3895, Protein of unknown function (DUF3895)	NA|570aa|up_5|NC_011567.1_1630307_1632017_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|650aa|up_4|NC_011567.1_1632667_1634617_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|120aa|up_3|NC_011567.1_1634652_1635012_-	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|285aa|up_2|NC_011567.1_1635334_1636189_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|171aa|up_1|NC_011567.1_1637017_1637530_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|177aa|up_0|NC_011567.1_1637547_1638078_-	pfam13592, HTH_33, Winged helix-turn helix	NA|50aa|down_0|NC_011567.1_1639537_1639687_-	NA	NA|149aa|down_1|NC_011567.1_1640630_1641077_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|568aa|down_2|NC_011567.1_1641475_1643179_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|58aa|down_3|NC_011567.1_1643269_1643443_-	NA	NA|497aa|down_4|NC_011567.1_1643533_1645024_-	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo)	NA|483aa|down_5|NC_011567.1_1645296_1646745_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|372aa|down_6|NC_011567.1_1647241_1648357_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|221aa|down_7|NC_011567.1_1648387_1649050_-	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|410aa|down_8|NC_011567.1_1649334_1650564_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|125aa|down_9|NC_011567.1_1650986_1651361_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain
