The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	4381	87791	2111882	tRNA,protease,terminase,capsid,tail,transposase,integrase,bacteriocin,portal,head,holin	Streptococcus_phage(76.92%)	89	24213:24233	59704:59724
WP_000163932.1|4381_4951_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_000258090.1|4951_8461_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_001234978.1|8518_8785_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_000041909.1|8777_9146_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_001224756.1|9265_10534_+	serine hydrolase	NA	NA	NA	NA	NA
WP_001208983.1|10530_11808_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.1	2.5e-06
WP_000892184.1|11811_12354_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	2.7e-10
WP_000744537.1|12369_14328_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	45.8	5.4e-109
WP_000588897.1|14449_14929_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000939546.1|22364_22601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205044.1|22831_24118_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	37.1	2.7e-72
24213:24233	attL	CTTTTTCATAATAATCTCCCT	NA	NA	NA	NA
WP_000876726.1|24349_25498_-|integrase	site-specific integrase	integrase	A0A1S5S8M0	Streptococcus_phage	100.0	1.6e-217
WP_001174227.1|25672_26485_-	restriction endonuclease	NA	A0A1S5S8D3	Streptococcus_phage	100.0	5.7e-129
WP_000285962.1|26915_27179_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	100.0	1.2e-43
WP_000156422.1|27178_27412_-	hypothetical protein	NA	A0A1S5S8D5	Streptococcus_phage	100.0	4.7e-36
WP_000495824.1|27411_27780_-	helix-turn-helix transcriptional regulator	NA	A0A1S5S8C4	Streptococcus_phage	100.0	3.2e-63
WP_001001334.1|28064_28211_+	hypothetical protein	NA	A0A141E188	Streptococcus_phage	100.0	2.5e-19
WP_000573356.1|28254_28629_+	hypothetical protein	NA	A0A1S5S8E6	Streptococcus_phage	100.0	3.5e-65
WP_000032100.1|28621_28825_+	hypothetical protein	NA	A0A1S5S8F3	Streptococcus_phage	100.0	1.2e-27
WP_001057654.1|28841_29039_+	hypothetical protein	NA	A0A1S5SEL5	Streptococcus_phage	100.0	3.6e-29
WP_001004503.1|29049_29211_+	hypothetical protein	NA	A0A1S5S8H5	Streptococcus_phage	100.0	4.5e-22
WP_000456433.1|29205_29631_-	hypothetical protein	NA	A0A1S5S8M8	Streptococcus_phage	100.0	2.1e-37
WP_001002346.1|29684_30398_+	ORF6C domain-containing protein	NA	A0A1S5S8E1	Streptococcus_phage	100.0	5.2e-134
WP_000370958.1|30410_30668_+	hypothetical protein	NA	A0A1S5SFD5	Streptococcus_phage	100.0	1.2e-43
WP_000462827.1|30753_31074_+	hypothetical protein	NA	A0A1S5S8E5	Streptococcus_phage	100.0	5.6e-48
WP_001156934.1|31089_31386_+	hypothetical protein	NA	A0A1S5S8D4	Streptococcus_phage	100.0	4.0e-48
WP_001289767.1|31378_32206_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A1S5SCN0	Streptococcus_phage	100.0	3.5e-150
WP_000228214.1|32345_33116_+	ATP-binding protein	NA	A0A1S5S8G3	Streptococcus_phage	100.0	5.2e-140
WP_000470303.1|33130_33325_+	hypothetical protein	NA	A0A1S5SCY7	Streptococcus_phage	100.0	1.8e-28
WP_000891963.1|33324_33552_+	hypothetical protein	NA	A0A1S5S8I1	Streptococcus_phage	100.0	2.3e-40
WP_000233203.1|33678_33846_+	hypothetical protein	NA	A0A1S5SEY3	Streptococcus_phage	100.0	5.0e-24
WP_000872730.1|33832_34042_+	hypothetical protein	NA	A0A1S5S8G8	Streptococcus_phage	100.0	8.5e-29
WP_000969678.1|34013_34343_+	hypothetical protein	NA	A0A141E1Y9	Streptococcus_phage	100.0	2.3e-60
WP_000772905.1|34332_34758_+	DUF1642 domain-containing protein	NA	A0A1S5S8E4	Streptococcus_phage	100.0	1.2e-77
WP_000612387.1|35268_35658_+	hypothetical protein	NA	A0A1S5S8G9	Streptococcus_phage	100.0	4.7e-73
WP_001067627.1|35657_35894_+	DUF3310 domain-containing protein	NA	A0A1S5S8G0	Streptococcus_phage	100.0	6.0e-39
WP_153231720.1|35890_36049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000736391.1|36260_36662_+	transcriptional activator	NA	A0A1S5S8P9	Streptococcus_phage	100.0	6.2e-68
WP_000397552.1|36850_37393_+|integrase	site-specific integrase	integrase	A0A1S5S8G1	Streptococcus_phage	100.0	1.4e-99
WP_000238198.1|37556_37748_+	hypothetical protein	NA	A0A1S5S8H4	Streptococcus_phage	100.0	3.2e-30
WP_000282422.1|37867_38188_+	HNH endonuclease	NA	A0A1S5SFJ3	Streptococcus_phage	100.0	2.7e-58
WP_001118282.1|38325_38718_+|terminase	P27 family phage terminase small subunit	terminase	A0A1S5S8F2	Streptococcus_phage	100.0	1.6e-65
WP_000527303.1|38710_40441_+|terminase	terminase large subunit	terminase	A0A1S5S8L1	Streptococcus_phage	100.0	0.0e+00
WP_001002923.1|40448_40667_+	hypothetical protein	NA	A0A1S5SEK2	Streptococcus_phage	100.0	1.3e-32
WP_000510807.1|40684_41887_+|portal	phage portal protein	portal	A0A1S5S8H6	Streptococcus_phage	100.0	8.8e-227
WP_001172113.1|41870_42446_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1S5S8L3	Streptococcus_phage	100.0	2.6e-104
WP_001037663.1|42442_43615_+|capsid	phage major capsid protein	capsid	A0A1S5S8J5	Streptococcus_phage	99.7	4.6e-180
WP_000120767.1|43626_43917_+	hypothetical protein	NA	A0A1S5S8Q9	Streptococcus_phage	100.0	7.7e-36
WP_000371962.1|43919_44201_+|head,tail	phage head-tail connector protein	head,tail	A0A1S5S8H0	Streptococcus_phage	100.0	1.8e-45
WP_000267061.1|44187_44487_+|head	phage head closure protein	head	A0A1S5S8I2	Streptococcus_phage	100.0	3.7e-49
WP_000063886.1|44483_44831_+	HK97 gp10 family phage protein	NA	A0A1S5SEL8	Streptococcus_phage	100.0	8.8e-47
WP_000777003.1|44827_45151_+	hypothetical protein	NA	A0A1S5SEP5	Streptococcus_phage	100.0	3.5e-53
WP_000191278.1|45162_45741_+	hypothetical protein	NA	A0A1S5S8L9	Streptococcus_phage	100.0	2.6e-107
WP_001227145.1|45752_46172_+	hypothetical protein	NA	A0A1S5S8H9	Streptococcus_phage	100.0	8.7e-73
WP_000918322.1|46449_49209_+	hypothetical protein	NA	A0A1S5S8I3	Streptococcus_phage	100.0	2.4e-288
WP_000589852.1|49205_49928_+	hypothetical protein	NA	A0A1S5S8M4	Streptococcus_phage	100.0	1.8e-134
WP_001846667.1|49928_53150_+|tail	phage tail protein	tail	A0A1S5S8K1	Streptococcus_phage	99.9	0.0e+00
WP_001091109.1|56508_56712_+	hypothetical protein	NA	A0A060QN53	Streptococcus_phage	100.0	1.3e-26
WP_001165344.1|57076_57493_+|holin	phage holin family protein	holin	A0A1S5SCE8	Streptococcus_phage	100.0	1.9e-67
WP_001186237.1|57496_57832_+|holin	phage holin	holin	A0A1S5S8N1	Streptococcus_phage	100.0	7.5e-51
WP_000350458.1|57831_58788_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A1S5S8I6	Streptococcus_phage	100.0	1.5e-144
WP_001209433.1|59057_59237_-	hypothetical protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
WP_001030863.1|59378_59528_-	hypothetical protein	NA	C5J952	Streptococcus_phage	95.9	9.1e-17
WP_000291875.1|59809_60277_+	nucleoside deaminase	NA	NA	NA	NA	NA
59704:59724	attR	CTTTTTCATAATAATCTCCCT	NA	NA	NA	NA
WP_000701992.1|60463_60907_+	dUTP diphosphatase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
WP_000691236.1|60908_61424_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_078065389.1|61437_62799_+	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_001809263.1|62871_63369_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_001844651.1|63393_63588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001819301.1|63569_64193_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000010163.1|64337_65306_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
WP_000492760.1|65847_66081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161801537.1|66085_66190_-	damage-inducible protein CinA	NA	NA	NA	NA	NA
WP_060544779.1|66404_66755_-|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
WP_001844860.1|67010_69644_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.1	1.3e-57
WP_000076480.1|69728_70166_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000009173.1|70528_71539_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_000366352.1|71687_72857_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_000616164.1|72853_73624_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000717461.1|73620_74613_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_000136447.1|74618_74852_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
WP_001093075.1|75390_75621_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000668301.1|76335_78489_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.2	5.5e-46
WP_000801608.1|78501_79851_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043300.1|80020_80728_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.8e-41
WP_000361197.1|80929_84655_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.9	3.3e-38
WP_000220665.1|84747_86190_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.9	2.2e-54
WP_000182586.1|86226_87249_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.6e-64
WP_000717500.1|87245_87791_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.9	4.1e-22
>prophage 2
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	139278	178739	2111882	tRNA,protease,bacteriocin	Planktothrix_phage(25.0%)	32	NA	NA
WP_001230167.1|139278_139563_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000723960.1|139617_141726_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571037.1|141722_142364_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	6.7e-24
WP_001038470.1|142570_143377_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_114865980.1|143342_143813_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001189280.1|144102_144423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424422.1|145186_145567_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_001844753.1|145940_146999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424407.1|148666_149041_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000619752.1|149248_150151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424427.1|150206_150560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072905.1|150556_151285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770316.1|152416_152656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000058766.1|152674_152920_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	57.6	1.7e-15
WP_001035309.1|153205_155041_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282978.1|155441_156563_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193606.1|156703_157159_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220964.1|157168_159082_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331961.1|159460_161140_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639574.1|161141_161375_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000977347.1|162180_162333_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|162334_162520_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
WP_000865669.1|162697_163381_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000569807.1|163377_163815_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_000655036.1|163804_164815_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	NA	NA	NA	NA
WP_000288029.1|169591_171208_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.0	3.0e-28
WP_001283046.1|173651_174401_+	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_001017606.1|174413_175586_+	nucleotide sugar dehydrogenase	NA	M1IJ73	Paramecium_bursaria_Chlorella_virus	43.2	9.2e-80
WP_000570712.1|175980_176844_+	XRE/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000933479.1|177129_177363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000738307.1|177384_178062_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000720788.1|178073_178739_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 3
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	325962	384344	2111882	transposase,integrase,protease,holin	Streptococcus_phage(23.08%)	48	361451:361464	385268:385281
WP_001063455.1|325962_328068_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	5.8e-117
WP_000032550.1|328922_329405_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743611.1|329499_330984_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_001156810.1|331136_332744_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_001022232.1|332902_333076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000091069.1|335644_337090_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	59.9	3.1e-133
WP_000565348.1|337091_337823_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
WP_000664173.1|337831_338524_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	56.8	2.7e-63
WP_001142516.1|338533_339199_+	polysaccharide biosynthesis tyrosine autokinase CpsD	NA	A0A1X9I5D6	Streptococcus_phage	60.7	1.4e-72
WP_001053205.1|339339_340476_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_001079795.1|340468_341020_+	acyltransferase	NA	NA	NA	NA	NA
WP_000862350.1|341016_342171_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_000672721.1|342287_343592_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA	NA
WP_001818726.1|343777_344947_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_001214397.1|345014_346085_+	UDP-glucuronate 4-epimerase Gla	NA	A0A291LAD7	Escherichia_phage	27.6	7.3e-23
WP_000685088.1|346113_347346_+	nucleotide sugar dehydrogenase	NA	M1I6D5	Acanthocystis_turfacea_Chlorella_virus	49.9	6.3e-103
WP_000268343.1|347561_347744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000676140.1|349551_350409_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.1	1.7e-94
WP_000131462.1|350409_351006_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	H9NC63	Sphingomonas_phage	33.1	5.1e-10
WP_000141505.1|351015_352065_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	45.1	8.3e-72
WP_000927994.1|353056_353491_+|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	24.6	2.1e-05
WP_000842582.1|354408_356391_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001032458.1|356691_361995_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
361451:361464	attL	CAAAAGACATTGAT	NA	NA	NA	NA
WP_001040012.1|362161_364321_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248788.1|364317_364914_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.3	9.6e-17
WP_000179547.1|364979_365507_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000146522.1|365576_365906_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711391.1|366391_367549_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039273.1|367561_368956_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158781.1|369031_370456_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
WP_000518018.1|370467_371157_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000771110.1|371254_372274_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_000765670.1|372391_373624_-	MFS transporter	NA	NA	NA	NA	NA
WP_001844742.1|373783_374254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_179130704.1|374420_374831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000206971.1|375361_375484_+|holin	choline-binding protein C	holin	NA	NA	NA	NA
WP_000163315.1|375605_376484_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_000373458.1|376465_377419_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_000562430.1|377405_378413_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_000210617.1|378396_379407_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_001224637.1|379483_380182_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_000743661.1|380178_381174_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000698434.1|381187_381820_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001808881.1|381820_382063_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_075588398.1|381987_382299_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_000754501.1|382739_382979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001844741.1|383023_383653_+|protease	serine protease	protease	NA	NA	NA	NA
WP_000378125.1|383951_384344_+|integrase	tyrosine-type recombinase/integrase	integrase	C9E2L6	Enterococcus_phage	41.4	3.6e-20
385268:385281	attR	CAAAAGACATTGAT	NA	NA	NA	NA
>prophage 4
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	442283	505027	2111882	tRNA,transposase,bacteriocin	Klosneuvirus(16.67%)	56	NA	NA
WP_001808894.1|442283_442454_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000628994.1|443276_444500_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_001059639.1|444667_445990_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_000236919.1|445991_447878_+	DUF4838 domain-containing protein	NA	NA	NA	NA	NA
WP_000836780.1|448045_448390_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000429426.1|448399_449812_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
WP_000359734.1|449881_451561_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001845061.1|451686_453126_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000691674.1|453129_454479_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_001063601.1|454666_455515_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403162.1|455529_456078_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000693286.1|456084_456342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000656547.1|456443_458126_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	7.7e-19
WP_001148103.1|458110_458941_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181374.1|459133_459637_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|460089_460653_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000678693.1|460666_461293_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867290.1|461320_461710_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_000333653.1|461714_462164_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|462291_462879_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105242.1|463268_464876_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
WP_000026645.1|465434_467066_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000795217.1|467358_472299_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_001096743.1|472388_473585_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119905.1|473720_474248_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|474324_474681_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_001122900.1|474717_476064_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|476153_476273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001845060.1|476506_477853_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	1.3e-77
WP_001220758.1|478546_479827_+	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	6.9e-12
WP_000651177.1|479883_480681_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_001813510.1|480691_481297_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000187276.1|481244_482795_-	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	25.6	9.9e-13
WP_000029046.1|482794_484258_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000856786.1|484270_486109_-	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	26.3	1.6e-25
WP_001088691.1|487211_487721_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255779.1|487884_488919_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|488945_489470_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034662.1|489949_491773_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_000115730.1|491785_492139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001836079.1|492343_493480_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
WP_001845059.1|493801_494176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777760.1|494337_494625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|494634_495045_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889923.1|495112_495844_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
WP_000653769.1|495840_496890_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132583.1|497057_497387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000682136.1|497663_498002_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219137.1|498006_498744_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001099894.1|498757_500098_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358812.1|500141_500297_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069063.1|500353_501715_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_000205160.1|501725_503879_-	peptide cleavage/export ABC transporter BlpA	NA	W8CYL7	Bacillus_phage	27.7	2.4e-41
WP_001093255.1|504160_504415_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_001099490.1|504430_504634_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
WP_001809846.1|504877_505027_+|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
>prophage 5
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	860376	870018	2111882	holin	Streptococcus_phage(88.89%)	10	NA	NA
WP_000728264.1|860376_862260_+|holin	phosphorylcholine esterase CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	23.7	9.5e-10
WP_001844793.1|862339_863470_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
WP_000254688.1|863479_864742_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	65.0	2.3e-140
WP_000689700.1|864745_865543_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.9	1.1e-60
WP_000033388.1|865762_866401_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.6	2.9e-75
WP_000806708.1|866397_867288_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	6.4e-73
WP_000358228.1|867327_867645_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166878.1|867647_868517_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	2.3e-115
WP_001261452.1|868743_869262_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_000345254.1|869370_870018_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
>prophage 6
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	1065577	1086280	2111882	integrase,protease	Streptococcus_phage(94.74%)	25	1056062:1056077	1076871:1076886
1056062:1056077	attL	TCTACTGTTCAAAGAG	NA	NA	NA	NA
WP_001210976.1|1065577_1066936_+	DNA (cytosine-5-)-methyltransferase	NA	A0A141E1L1	Streptococcus_phage	56.7	1.3e-130
WP_000645900.1|1066919_1067369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000566528.1|1067361_1067742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000840776.1|1067754_1067988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821271.1|1067990_1068593_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001291561.1|1068754_1069972_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|1070053_1070257_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|1070717_1070948_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|1070944_1071367_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|1071871_1072225_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|1072284_1072452_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691751.1|1072570_1074490_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A2K5B2A5	Erysipelothrix_phage	99.5	0.0e+00
WP_001814923.1|1074505_1074622_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224320.1|1074866_1075802_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_000769868.1|1075798_1076800_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|1076796_1078974_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
1076871:1076886	attR	CTCTTTGAACAGTAGA	NA	NA	NA	NA
WP_000331160.1|1078976_1081424_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506269.1|1081407_1081914_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.4	9.5e-90
WP_000342539.1|1081888_1082386_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1082502_1082724_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|1082766_1083972_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|1083994_1084147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813485.1|1084149_1085535_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	99.8	1.2e-264
WP_000985015.1|1085563_1085950_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|1085965_1086280_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
>prophage 7
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	1193329	1259809	2111882	transposase,protease,holin	Indivirus(16.67%)	58	NA	NA
WP_000792121.1|1193329_1194283_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000726272.1|1194455_1196621_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001096339.1|1196620_1197361_+	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.5	4.9e-18
WP_000096168.1|1197509_1198997_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	32.8	4.9e-70
WP_000522311.1|1199040_1200330_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_000763468.1|1200333_1201152_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000153021.1|1201151_1201946_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000280946.1|1201942_1205482_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_000661496.1|1205472_1206171_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	32.9	2.5e-24
WP_000931157.1|1206488_1207475_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	2.4e-137
WP_001223088.1|1207649_1208966_-	McrC family protein	NA	NA	NA	NA	NA
WP_001042395.1|1208952_1210866_-	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
WP_001867136.1|1211814_1212174_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_000762426.1|1212177_1212447_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_001074712.1|1212443_1213481_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_000461585.1|1214605_1215262_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_000638796.1|1215305_1215938_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_001237219.1|1216030_1216390_-	YbaN family protein	NA	NA	NA	NA	NA
WP_000179635.1|1216495_1218583_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.6	3.0e-105
WP_012677071.1|1218749_1219793_-	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_000705306.1|1220676_1221525_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
WP_000643975.1|1221622_1222312_-	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000837609.1|1222323_1223202_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000411229.1|1223191_1224061_-|holin	choline kinase LicA	holin	NA	NA	NA	NA
WP_000609894.1|1224077_1225100_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000638502.1|1225104_1225812_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000835899.1|1226147_1227635_+	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000811874.1|1227644_1228448_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
WP_001199649.1|1228449_1229259_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
WP_001126437.1|1229533_1232710_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166703.1|1233022_1234102_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.2	2.2e-59
WP_001293845.1|1234151_1235075_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	8.7e-25
WP_000850024.1|1235093_1235615_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244451.1|1235825_1236455_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773235.1|1236454_1236997_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_001844621.1|1237721_1239281_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	2.1e-10
WP_000895728.1|1239324_1240224_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_000219823.1|1240225_1240786_-	LemA family protein	NA	NA	NA	NA	NA
WP_000801941.1|1240879_1241593_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_000808288.1|1241846_1243130_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.3	4.0e-60
WP_000863631.1|1243324_1244896_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000402071.1|1244907_1245240_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_001814693.1|1245330_1245708_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_001003469.1|1245779_1247084_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.5	1.7e-26
WP_000023524.1|1247096_1247903_+	sugar-phosphatase	NA	NA	NA	NA	NA
WP_001009007.1|1247945_1248944_+	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068669.1|1249222_1249570_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000237418.1|1249688_1250018_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	8.2e-10
WP_000712098.1|1250011_1250386_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_000362438.1|1250382_1250649_-	chorismate mutase	NA	NA	NA	NA	NA
WP_001162129.1|1250764_1251208_-	flavodoxin	NA	NA	NA	NA	NA
WP_000401777.1|1251311_1252247_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_001808393.1|1252300_1252585_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000252109.1|1252641_1253220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000199558.1|1255197_1256544_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000711943.1|1257039_1257210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000151483.1|1257222_1257864_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	40.1	1.7e-19
WP_001845280.1|1258462_1259809_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	39.8	1.7e-77
>prophage 8
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	1363243	1406224	2111882	tRNA,transposase,bacteriocin,holin	Streptococcus_phage(28.57%)	48	NA	NA
WP_000691855.1|1363243_1363438_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001136122.1|1363938_1364124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000065693.1|1364427_1365990_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
WP_000936184.1|1366131_1366830_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000071665.1|1366872_1367769_-	EamA family transporter	NA	NA	NA	NA	NA
WP_000872220.1|1367777_1368713_-	serine hydrolase	NA	NA	NA	NA	NA
WP_001102217.1|1368709_1369435_-	CppA family protein	NA	NA	NA	NA	NA
WP_000290648.1|1369518_1370154_-|holin	1-alkyl-2-acetylglycerophosphocholine esterase	holin	A0A2K9L661	Tupanvirus	28.2	4.3e-07
WP_000972931.1|1370155_1370983_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000526284.1|1371004_1371340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001272941.1|1372502_1373114_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855733.1|1373158_1373887_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272302.1|1373925_1374837_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
WP_000926600.1|1374902_1375127_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590986.1|1375204_1375948_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.6e-29
WP_001103449.1|1375947_1376748_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1376905_1377262_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170346.1|1377274_1377787_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
WP_000405821.1|1377786_1378281_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.8	2.9e-43
WP_000858735.1|1378415_1378862_+	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_001097986.1|1378858_1379506_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_000689945.1|1379526_1380108_-	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA	NA
WP_000138517.1|1380108_1380984_-	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA	NA
WP_000036789.1|1381135_1382515_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000175407.1|1382808_1383732_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_000915957.1|1383791_1384397_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	7.7e-54
WP_000673694.1|1384415_1385660_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	1.7e-55
WP_000371293.1|1385882_1386140_-	DUF896 family protein	NA	NA	NA	NA	NA
WP_000164760.1|1386181_1388218_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000038731.1|1388477_1389395_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_012677106.1|1389763_1390090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001846081.1|1390056_1390341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001099682.1|1390613_1391456_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	2.2e-51
WP_001844203.1|1391569_1392961_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_001813436.1|1393195_1393573_-|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
WP_000915901.1|1393787_1394765_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000850587.1|1394761_1395844_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.0	5.2e-37
WP_001040724.1|1397337_1398534_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
WP_000348122.1|1399409_1400279_-	aquaporin family protein	NA	NA	NA	NA	NA
WP_000248973.1|1400501_1401182_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_001021429.1|1401139_1402246_-	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_012677083.1|1402181_1402379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001833808.1|1402356_1402611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000200313.1|1402968_1403502_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_001844799.1|1403488_1403704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001833809.1|1403670_1403814_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000121713.1|1404047_1405766_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	83.4	1.5e-272
WP_000434652.1|1405876_1406224_+|bacteriocin	PedC/BrcD family bacteriocin maturation disulfide isomerase	bacteriocin	NA	NA	NA	NA
>prophage 9
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	1469244	1475998	2111882	protease	Streptococcus_phage(50.0%)	8	NA	NA
WP_000081003.1|1469244_1470213_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_000011276.1|1470246_1471158_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	100.0	2.3e-155
WP_001231093.1|1471154_1472132_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	99.4	9.8e-184
WP_000163033.1|1472128_1473019_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
WP_001140412.1|1473070_1473451_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422409.1|1473461_1474049_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1474057_1475290_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_000162483.1|1475491_1475998_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	6.7e-27
>prophage 10
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	1735291	1742623	2111882		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000167850.1|1735291_1735993_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	4.1e-35
WP_000777244.1|1736415_1737375_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	2.4e-57
WP_001193668.1|1737364_1738321_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764304.1|1738317_1739070_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_000858260.1|1739165_1740131_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821643.1|1740355_1740598_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.7e-17
WP_001222225.1|1740597_1741320_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1741306_1741876_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1741894_1742623_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 11
NC_012467	Streptococcus pneumoniae P1031, complete sequence	2111882	2089735	2098489	2111882		Bacillus_phage(33.33%)	9	NA	NA
WP_000510406.1|2089735_2090575_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.5e-15
WP_000835715.1|2090559_2091387_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
WP_000712132.1|2091383_2091929_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227958.1|2091939_2092761_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170194.1|2092802_2094086_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	1.1e-17
WP_000424262.1|2094082_2095333_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
WP_000455903.1|2095491_2095860_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266662.1|2095862_2096960_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2097010_2098489_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
