The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010117	Coxiella burnetii RSA 331, complete genome	2016427	332307	341193	2016427		uncultured_Mediterranean_phage(28.57%)	10	NA	NA
WP_005771456.1|332307_333627_+	polynucleotide adenylyltransferase PcnB	NA	G3MAR3	Bacillus_virus	35.0	4.3e-25
WP_005771454.1|333623_334184_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	39.2	4.5e-16
WP_005771452.1|334180_334660_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.6	3.1e-26
WP_005771450.1|334674_334920_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	51.1	3.3e-16
WP_005771448.1|334933_335146_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_005771445.1|335156_335396_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010957483.1|336399_336885_+	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	58.0	2.5e-47
WP_012220155.1|336862_338278_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	29.9	2.6e-52
WP_010957485.1|339738_340386_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_012220156.1|340413_341193_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	32.9	7.4e-33
>prophage 2
NC_010117	Coxiella burnetii RSA 331, complete genome	2016427	1767915	1809227	2016427	protease,transposase	Streptococcus_phage(50.0%)	38	NA	NA
WP_012220777.1|1767915_1768608_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_010958412.1|1768695_1769100_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	46.3	2.2e-25
WP_010958413.1|1769101_1769764_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_005773029.1|1769794_1770214_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_005770421.1|1770232_1770661_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_012220779.1|1770890_1771340_+	integration host factor	NA	A0A0A1E0L7	African_swine_fever_virus	33.7	4.9e-05
WP_012220780.1|1771447_1772710_+	Dot/Icm T4SS effector CoxDFB5	NA	NA	NA	NA	NA
WP_012220781.1|1772745_1773984_+	CBU_1752 family Dot/Icm T4SS effector	NA	NA	NA	NA	NA
WP_005770411.1|1774057_1774474_+	DUF4351 domain-containing protein	NA	NA	NA	NA	NA
WP_005770409.1|1774495_1775092_-	CBU_1754 family Dot/Icm T4SS effector	NA	NA	NA	NA	NA
WP_010958417.1|1775101_1775227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010958418.1|1775273_1776455_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005772222.1|1779189_1780209_+|transposase	IS110-like element IS1111A family transposase	transposase	M1NSC9	Streptococcus_phage	26.4	1.8e-10
WP_010958421.1|1780625_1780739_+	DUF1658 domain-containing protein	NA	NA	NA	NA	NA
WP_012220786.1|1780802_1782776_-	response regulator	NA	A0A1V0SGX0	Hokovirus	25.2	3.2e-32
WP_012220787.1|1782829_1784212_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_080513000.1|1784369_1785704_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_010958426.1|1785727_1785835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011996487.1|1785833_1786190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010958427.1|1786315_1786534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010958428.1|1786533_1788984_-	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA	NA
WP_010958429.1|1788984_1789254_-	ferrous iron transport protein A	NA	NA	NA	NA	NA
WP_005770384.1|1789843_1790461_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_012220006.1|1790565_1790838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005772222.1|1790834_1791854_-|transposase	IS110-like element IS1111A family transposase	transposase	M1NSC9	Streptococcus_phage	26.4	1.8e-10
WP_010958431.1|1791938_1793255_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.5	3.0e-34
WP_010958432.1|1793352_1795098_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_012220792.1|1795332_1795950_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_012220794.1|1796219_1796603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010958434.1|1797705_1797891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005770375.1|1797950_1799042_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
WP_005772222.1|1799211_1800231_+|transposase	IS110-like element IS1111A family transposase	transposase	M1NSC9	Streptococcus_phage	26.4	1.8e-10
WP_012220006.1|1800227_1800500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011996480.1|1802244_1803699_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_080513001.1|1803685_1804900_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010958438.1|1804971_1805976_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_080513002.1|1805990_1808009_-	transketolase	NA	NA	NA	NA	NA
WP_005772222.1|1808207_1809227_+|transposase	IS110-like element IS1111A family transposase	transposase	M1NSC9	Streptococcus_phage	26.4	1.8e-10
>prophage 1
NC_010115	Coxiella burnetii RSA 331 plasmid QpH1, complete sequence	37317	0	25379	37317	integrase	Bifidobacterium_phage(33.33%)	30	NA	NA
WP_012569583.1|408_1662_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_017253372.1|1654_1870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011109639.1|1863_2034_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012220002.1|2278_2794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010891172.1|3451_4183_+	Dot/Icm T4SS effector CpeB	NA	NA	NA	NA	NA
WP_012219985.1|4214_4340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011109640.1|4568_4802_+	Dot/Icm T4SS effector CoxU3/CpeC	NA	NA	NA	NA	NA
WP_078377999.1|5011_5695_+	Dot/Icm T4SS effector CpeD	NA	NA	NA	NA	NA
WP_012219993.1|5718_6741_+	Dot/Icm T4SS effector CpeE	NA	NA	NA	NA	NA
WP_155106168.1|6977_8642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012219989.1|8763_9615_-	CBUA0020 family Dot/Icm T4SS effector	NA	NA	NA	NA	NA
WP_078378000.1|9641_10718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011109645.1|11151_11463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012219990.1|11595_12297_-	Dot/Icm T4SS effector CpeF	NA	NA	NA	NA	NA
WP_103093680.1|12575_12671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010891163.1|12740_13184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011109647.1|13309_13570_-	Dot/Icm T4SS effector CpeG	NA	NA	NA	NA	NA
WP_010891162.1|14406_14751_-	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_078378002.1|14747_15203_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_012219979.1|15199_15433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012219991.1|17279_17900_+	VUT family protein	NA	NA	NA	NA	NA
WP_010891158.1|17889_18636_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010891157.1|18825_19179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043881096.1|19448_19655_-	Dot/Icm T4SS effector CpeH	NA	NA	NA	NA	NA
WP_012219986.1|19721_20255_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_010891155.1|20583_21507_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	35.2	2.5e-11
WP_012219984.1|21645_21786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010891154.1|21816_23037_+	AAA family ATPase	NA	A0A1I9KF58	Aeromonas_phage	31.2	7.2e-35
WP_010891298.1|23029_24034_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_094322096.1|24077_25379_+	replication initiation protein	NA	A0A218MNI2	uncultured_virus	28.4	4.0e-07
>prophage 2
NC_010115	Coxiella burnetii RSA 331 plasmid QpH1, complete sequence	37317	32675	36688	37317		Bacteriophage(100.0%)	2	NA	NA
WP_043881098.1|32675_34256_+	hypothetical protein	NA	A0A1W5K0N1	Bacteriophage	40.0	6.6e-89
WP_052293383.1|34252_36688_+	RHS repeat protein	NA	B6SD27	Bacteriophage	34.8	8.0e-118
