The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012587	Sinorhizobium fredii NGR234, complete sequence	3925702	1413164	1427269	3925702	tRNA	uncultured_Mediterranean_phage(81.82%)	14	NA	NA
WP_164924297.1|1413164_1414028_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.7	3.7e-33
WP_012707925.1|1414020_1414749_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.2	4.4e-40
WP_012707926.1|1414821_1415931_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.6	1.1e-29
WP_012707927.1|1416023_1416230_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	2.8e-08
WP_012707928.1|1416308_1416998_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_012707929.1|1416994_1417837_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	40.6	3.8e-43
WP_012707930.1|1417876_1419160_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.5	2.1e-101
WP_012707931.1|1419186_1419957_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	33.6	1.9e-25
WP_012707932.1|1419953_1420607_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.6	4.0e-16
WP_012707933.1|1420766_1421417_+	biotin biosynthesis protein BioC	NA	NA	NA	NA	NA
WP_012707934.1|1421581_1423117_+	LysM peptidoglycan-binding domain-containing protein	NA	Q8SBN9	Clostridium_phage	35.0	2.3e-14
WP_012707935.1|1423148_1424024_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012707936.1|1424321_1424654_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.8	7.5e-11
WP_012707937.1|1424701_1427269_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	43.3	8.0e-52
>prophage 2
NC_012587	Sinorhizobium fredii NGR234, complete sequence	3925702	1943645	1954420	3925702	tail	Sulfitobacter_phage(60.0%)	12	NA	NA
WP_012708414.1|1943645_1944140_-	hypothetical protein	NA	Q8W6L2	Sinorhizobium_phage	47.5	3.9e-32
WP_012708415.1|1944142_1945354_-	hypothetical protein	NA	A0A1Y0SVH2	Sinorhizobium_phage	50.6	2.7e-58
WP_012708417.1|1946199_1947021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012708418.1|1947137_1948499_-|tail	tail fiber domain-containing protein	tail	M4NM77	Sulfitobacter_phage	34.0	2.6e-41
WP_012708419.1|1948506_1948953_-	GNAT family N-acetyltransferase	NA	X2CY06	Brucella_phage	52.2	2.6e-35
WP_012708420.1|1948949_1950560_-	hypothetical protein	NA	A0A088F6U1	Sulfitobacter_phage	37.7	5.7e-80
WP_012708421.1|1950559_1951162_-	hypothetical protein	NA	A0A088FAT4	Sulfitobacter_phage	33.0	2.8e-16
WP_012708422.1|1951158_1951755_-	hypothetical protein	NA	A0A088F6W5	Sulfitobacter_phage	35.4	4.9e-21
WP_012708423.1|1951751_1952075_-	hypothetical protein	NA	F8TUS1	EBPR_podovirus	49.5	3.7e-23
WP_165447156.1|1952071_1952248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012708424.1|1952312_1953308_-	DUF5309 domain-containing protein	NA	A0A088FAT7	Sulfitobacter_phage	71.6	7.5e-131
WP_012708425.1|1953466_1954420_-	hypothetical protein	NA	A0A088F6W8	Sulfitobacter_phage	36.8	1.3e-31
>prophage 3
NC_012587	Sinorhizobium fredii NGR234, complete sequence	3925702	2350623	2360311	3925702		Vibrio_phage(33.33%)	6	NA	NA
WP_012708784.1|2350623_2352678_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.1e-35
WP_012708786.1|2353149_2354187_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	64.7	7.8e-14
WP_012708787.1|2354265_2355453_-	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	27.8	2.0e-34
WP_164924413.1|2355626_2357492_-	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	35.0	2.1e-73
WP_012708789.1|2357727_2359719_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.6	9.2e-88
WP_012708790.1|2359861_2360311_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	37.7	9.8e-14
>prophage 4
NC_012587	Sinorhizobium fredii NGR234, complete sequence	3925702	2403878	2462158	3925702	transposase,protease,holin,tRNA	Bacillus_virus(28.57%)	51	NA	NA
WP_164924418.1|2403878_2405081_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012708834.1|2405183_2406140_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_012708835.1|2406384_2407566_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_164924419.1|2407722_2408334_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_012708837.1|2408586_2410953_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	37.3	2.8e-19
WP_012708838.1|2410977_2411712_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012708839.1|2411922_2412642_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_012708840.1|2412827_2413040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164924420.1|2413102_2416141_-	calcium-binding protein	NA	NA	NA	NA	NA
WP_164924658.1|2416540_2417644_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012708843.1|2417699_2418011_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
WP_012708844.1|2418187_2419291_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_164924421.1|2419317_2419770_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012708846.1|2419766_2420237_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_164924422.1|2420271_2420814_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.4	7.6e-37
WP_012708848.1|2421112_2421298_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_012708849.1|2421313_2422573_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A1B0V011	Roseobacter_phage	43.8	1.8e-52
WP_012708850.1|2422569_2423202_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_012708851.1|2423198_2423822_-	DUF1285 domain-containing protein	NA	NA	NA	NA	NA
WP_012708852.1|2424090_2425104_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_012708853.1|2425107_2426028_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_012708854.1|2426024_2428838_+	DUF4159 domain-containing protein	NA	NA	NA	NA	NA
WP_012708855.1|2428845_2430915_+	membrane protein	NA	NA	NA	NA	NA
WP_012708856.1|2431222_2431777_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_012708857.1|2432031_2433009_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_164924423.1|2433010_2433499_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_012708859.1|2433613_2434522_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_012708860.1|2434680_2435226_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_012708861.1|2435403_2435922_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_012708862.1|2435925_2436753_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_012708863.1|2436985_2438695_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_164924659.1|2439197_2439785_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	37.3	3.1e-28
WP_012708865.1|2440015_2440594_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_012708866.1|2440637_2441102_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	48.9	6.5e-29
WP_012708867.1|2441130_2442048_-	cation transporter	NA	NA	NA	NA	NA
WP_012708868.1|2442227_2444417_-	anthranilate synthase	NA	NA	NA	NA	NA
WP_178385068.1|2444531_2444576_-	trpE operon leader peptide TrpLE	NA	NA	NA	NA	NA
WP_164924424.1|2444703_2446809_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_012708870.1|2447067_2447883_+	extensin family protein	NA	NA	NA	NA	NA
WP_164924425.1|2448041_2448503_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_164924426.1|2448656_2449166_+	DUF1993 family protein	NA	NA	NA	NA	NA
WP_012708873.1|2449187_2450867_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_012708874.1|2450953_2452174_-	DUF2333 family protein	NA	NA	NA	NA	NA
WP_012708875.1|2452177_2453467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012708876.1|2453486_2455400_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012708877.1|2455401_2456550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012708878.1|2456611_2457700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012708880.1|2458256_2458841_-	thymidine kinase	NA	A0A0K2FHC3	Enterobacter_phage	55.8	1.0e-50
WP_012708881.1|2459124_2460081_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_012708882.1|2460266_2461112_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_012708883.1|2461108_2462158_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	32.6	9.6e-20
>prophage 5
NC_012587	Sinorhizobium fredii NGR234, complete sequence	3925702	3293722	3343587	3925702	transposase,protease,integrase	Streptococcus_phage(28.57%)	48	3320201:3320217	3352537:3352553
WP_012709619.1|3293722_3294262_-|protease	AprI/Inh family metalloprotease inhibitor	protease	NA	NA	NA	NA
WP_012709620.1|3294447_3295044_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_012709621.1|3295461_3296241_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_012709622.1|3296259_3298101_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_012709623.1|3298108_3298489_-	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
WP_012709624.1|3298501_3298894_-	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
WP_012709625.1|3299198_3299846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012709627.1|3300194_3301604_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_012709628.1|3301815_3302358_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_012709629.1|3302373_3302922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012709630.1|3303065_3303749_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.4	3.9e-22
WP_012709631.1|3303824_3304280_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_012707828.1|3304717_3305968_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_012709632.1|3306032_3306839_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_193377889.1|3307002_3307680_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
WP_164924511.1|3307780_3310426_-	DNA translocase FtsK 4TM domain-containing protein	NA	A0A218M9A2	Mycobacterium_phage	44.1	9.7e-77
WP_012709635.1|3310766_3312194_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.6	6.7e-32
WP_012709636.1|3312221_3312560_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_012709637.1|3312810_3313695_-	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
WP_012709638.1|3313783_3314998_+	ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_012709639.1|3315406_3316657_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_012709640.1|3316728_3316935_-	DUF1737 domain-containing protein	NA	NA	NA	NA	NA
WP_164924512.1|3316931_3317837_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_164924513.1|3317939_3318182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012709642.1|3318281_3318887_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_012709643.1|3318898_3319279_+	RidA family protein	NA	NA	NA	NA	NA
WP_012709644.1|3319284_3320142_+	MoxR family ATPase	NA	NA	NA	NA	NA
3320201:3320217	attL	TCTCCCCGCAAGCGGGG	NA	NA	NA	NA
WP_164924685.1|3320310_3321603_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_012709646.1|3322028_3322952_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
WP_012709647.1|3322951_3324136_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_012709648.1|3324378_3325395_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_012709649.1|3325446_3328275_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_012709651.1|3328865_3329237_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_012709652.1|3329269_3329539_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_164924514.1|3329670_3330303_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012709654.1|3330299_3330884_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012709655.1|3331062_3332073_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_012709656.1|3332074_3333256_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	38.0	3.0e-54
WP_164924515.1|3333248_3334532_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	46.7	2.3e-92
WP_012709658.1|3334546_3335155_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_012709659.1|3335240_3335687_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_012709660.1|3335849_3336332_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_164924516.1|3336565_3337999_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA	NA
WP_012709662.1|3337988_3339311_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.4e-28
WP_012709663.1|3339499_3340705_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_012709664.1|3340757_3341285_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_012708196.1|3341535_3342396_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	34.8	3.6e-33
WP_015886711.1|3342408_3343587_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
3352537:3352553	attR	TCTCCCCGCAAGCGGGG	NA	NA	NA	NA
>prophage 1
NC_000914	Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence	536165	160277	271800	536165	transposase,integrase	Acidithiobacillus_phage(20.83%)	77	212713:212772	269949:272508
WP_164924723.1|160277_161801_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	44.7	3.1e-120
WP_010875170.1|161812_162559_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	45.4	1.3e-50
WP_164924724.1|162578_162887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875174.1|166589_167087_-	UPF0262 family protein	NA	NA	NA	NA	NA
WP_164924726.1|167502_168912_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010875176.1|169065_170469_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.0	6.6e-16
WP_010875177.1|170937_172323_-	CapA family protein	NA	NA	NA	NA	NA
WP_010875178.1|172358_173420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.8	1.6e-22
WP_010875179.1|173416_174424_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.2	6.6e-10
WP_010875180.1|174425_175301_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010875181.1|175303_176245_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010875182.1|176249_177845_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010875183.1|177917_178442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010875184.1|178465_179644_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010875185.1|179806_180979_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_010875186.1|181113_182109_-	ectoine utilization protein EutC	NA	A2RQC3	Archaeal_BJ1_virus	40.3	2.8e-05
WP_010875187.1|182108_183107_-	hydroxyectoine utilization dehydratase EutB	NA	NA	NA	NA	NA
WP_010875188.1|183143_184352_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010875189.1|184801_185575_-	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	NA	G9BWD6	Planktothrix_phage	36.7	1.4e-28
WP_010875190.1|185571_186267_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_164924728.1|186269_186941_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010875192.1|187037_187940_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010875193.1|188405_188915_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_164924730.1|189197_189845_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010875060.1|190026_191577_+|transposase	IS21-like element ISRsp2 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.3	1.2e-114
WP_012708757.1|191588_192365_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	46.3	9.5e-57
WP_164924731.1|192411_192720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010875194.1|193371_195489_+	S9 family peptidase	NA	F2Y2Z7	Organic_Lake_phycodnavirus	28.3	3.0e-12
WP_164923967.1|195813_196574_-|transposase	IS5-like element ISNGR9 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	46.9	4.8e-21
WP_010875196.1|196778_197162_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010875198.1|197926_198307_+	RidA family protein	NA	NA	NA	NA	NA
WP_010875199.1|198419_199895_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010875200.1|199855_202126_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.6	7.0e-07
WP_164924732.1|204199_204364_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_193377914.1|204539_204959_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_010875201.1|205206_206592_-	CapA family protein	NA	NA	NA	NA	NA
WP_010875202.1|207278_208289_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_164923822.1|209786_211271_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_010875204.1|211267_212164_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	34.3	8.8e-30
212713:212772	attL	ATACCAACGAGCGCCGTTTCTGACTCTCATGGGATTCCCAAGGTGTCGCGAATCTGAATC	NA	NA	NA	NA
WP_010875205.1|212796_213375_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_076611292.1|213529_214564_+|transposase	IS110-like element ISRsp4 family transposase	transposase	NA	NA	NA	NA
WP_010875208.1|215927_217784_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010875209.1|218301_219519_+	MFS transporter	NA	NA	NA	NA	NA
WP_010875212.1|222209_223400_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_164924733.1|225269_225404_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_193377915.1|227071_227821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165447180.1|227945_229202_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_164924734.1|229423_229810_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_164924735.1|230062_231301_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1P7C7	Bacillus_phage	30.3	9.3e-06
WP_010875216.1|231297_232230_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_010875217.1|232226_233072_+|integrase	site-specific integrase	integrase	S5M9V8	Brevibacillus_phage	26.8	5.4e-05
WP_010875218.1|233128_234127_-|integrase	site-specific integrase	integrase	A0A1P8DJ76	Virus_Rctr85	33.7	9.5e-09
WP_010875219.1|234123_235068_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_010875220.1|235064_236294_-|integrase	site-specific integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	26.5	8.1e-10
WP_164924736.1|236460_236661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164924737.1|236874_237753_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	31.6	5.9e-31
WP_010875222.1|237760_238957_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_164924738.1|239342_239564_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_010875223.1|239640_241260_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	36.1	1.7e-76
WP_010875224.1|241822_242803_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_164924739.1|243321_244596_+	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	23.7	2.8e-21
WP_010875226.1|244617_246882_+	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	21.6	4.0e-23
WP_164924740.1|247810_248887_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_010875228.1|249146_249881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164924741.1|251416_251593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875229.1|251810_253562_+	ThiF family adenylyltransferase	NA	NA	NA	NA	NA
WP_010875230.1|253549_254044_+	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA	NA
WP_164924742.1|256402_256840_+	trehalose-6-phosphate synthase	NA	NA	NA	NA	NA
WP_010875231.1|256832_258035_-|transposase	IS256-like element ISNGR8 family transposase	transposase	A0A218MNI5	uncultured_virus	42.8	5.1e-41
WP_164924769.1|258078_259110_+	trehalose-6-phosphate synthase	NA	NA	NA	NA	NA
WP_010875232.1|259574_260591_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010875233.1|263119_263938_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_010875234.1|264288_265026_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	46.1	4.5e-56
WP_010875067.1|265858_266128_+	Y4bD/Y4pK family protein	NA	NA	NA	NA	NA
WP_010875070.1|267043_269128_+	recombinase family protein	NA	A0A0H3UZF2	Geobacillus_virus	20.4	3.7e-07
WP_010875205.1|270032_270611_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_076611292.1|270765_271800_+|transposase	IS110-like element ISRsp4 family transposase	transposase	NA	NA	NA	NA
269949:272508	attR	ATACCAACGAGCGCCGTTTCTGACTCTCATGGGATTCCCAAGGTGTCGCGAATCTGAATCCATGCTGCAAACAGGAGGTTTGCGATGGGTTCGGCGGTTTTGTTGCGTGATGATTTCGACGGAGCTGCTCTTCGACAGCTCGCACGGCAGACGAAGGATGCCAATCAGGCCCGGCGGTTGCTGGCTCTTGCCGCGATCTATGACGGCGGCCCGCGCTCGGATGCGGCACGGATCGGCAGCGTGACGCTGCAGATTGTGCGGGATTGGGTCCTGCGTTTCAACGCGCGCGGCCCCGATGGACTGGTGAATGGCAAAGCGCCTGGCGGCCGAGCGAAGTTGAATGCCGCTCAGCGCCAGGCTCTTGCAAAGGTCGTCGAGAGCGGCCCGATCCCGGCGATCCACGGTGTTGTCCGTTGGCGGCGCAAGGACCTGGTTCAGTGGATATTCCAGGAATTCCGCATCTCGATGGACGAGACGACGGTCGGCCGCGAGTTGAAGGCGCTCGGCTTTGCCAAGCTGTCGGCTCGCCCACGCCACTACGCTCAGAACGAGCTGGAAGTAGACGCTTTTAAAAAGACTTCCCCGCCGCTCTGGCGGAAATCCGAAGCCGGCTCCCGCAAGGCACGGACATCGAACTCTGGTGGGCCGACGAAGCGCGCATAGGCCAGAAGAACAAGATCACGCGCCGATGGGCGCGTCGTGGCACCAGACCATCCGCGCCCTTGGATCAGCGCACCATGTTGAGGTGGACGGCTCCCAACGGCATCGAATGTGCCAGAATGAGTTCGTTGAAGTTCTCAATCGAGGGAAACCGTCCGTGGAACAGATTATCCGAATTGGTATGGATACGTCAAAGAGCGTCTTCCAATTGCATGGTGTGAATGCGGTTGAGCAGCCAATCCTTCGTAAGAAGCTGTCGCGCCGGGAAATGGTGAAGTTCTTCGAGAAAACACCGCCGACCATTATCGCACTTGAAGCGTGCGGTGGGTCACATCACTGGGCACGGCTGTTAAGTTCGTTCGGCCATGAAGTAAAGTTGATAGCACCGCAACTGGCCAAGCCGTATGTGAAACGGGGCAAGAACGATGCCGCGGATGCGGAAGCATTGTGTGAGGCAATGAGCCGCCCGACCATGCGCTTCGTGCCAATGAAAACGGCTGATCAGCAGGCGGCGTTAATGCTGGTCGGTATGCGAGAGAGACTCATCCGCAATCGGACACAGCTCGCCAATGCCATTCGCGGTTTTGCCATGGAATTTGGCATCGTTGCGGCCAAAGGCATGTGCCGCATCGAAGCGCTATTGGAGCGCATTGCCGCTGACCCGTCCCTACCGGAACTGGCGCAGGATCTCTTCGCGCTGCATGGACAGGAATACCGCGAGCTAGCTTGCCAGATCAAAACGCTCGATGAAAAGTTGATGAAGTTGCATCGTGCTGATGAATGCAGCAAACGCCTGGCCGAGATCCCGGGTGTCGGCCCGATAGGCGCCTCCCTTCTCTTGATGAAGACACCGGATCCTCGAATGTTTAAATCGGGCCGCGACTTTGCAGCATGGATCGGTCTGACGCCGAAGGACCATTCAACTGCCGGAAAGGTCAGGCTTGGTGTCATTACCCGGGCTGGCGACGAAATGTTGCGGAGCATCTTGGTGGTTGGCGCGACATCTCTTCTACAGCAAGTCAGAACAGGCCGCAGCAGGCACGCCTCTGCATGGCTTATGGGGCTGCTGCAGCGGAAAAGGCCAAAGTTGGTTGCCGTAGCGCTCGCCAACAAGCTGGCGCGGATTGCGTGGAAGCTTATGACGAGCGGCGAGTCATATCGCCAGGCAGAAGGCCAAGCGCAGACATCATAAAAGTTCAGCCACCACGGTGAGCAAAGACAAAATGCTACCGTGTGAGCTGATGCTGTGAACTTGCAAGCGAAGAGCAGATGATGCGATCGGACGATCCAAGACGCGTGAAACTCCGTTAGGCCCACTGACCGCTAAAGGTCGAGACCATGTTAGGAATACGCGTTGCGGAAATCATCTTGGCCAGTGGTCATGTGCGACCACACCAAAAGGCCGCACATATGGAAGCAAGCGATCCGGTCAAAAATATCTGCAGAAAACACTTGCAAGCGGGAGCCGTCCACATATGTGGGCCTACATCTTCGGGGCCGTCTGCCCGCGGAAGGGAAAGGGCGCGGGCCTGGTCCTGCCCTATTGCGATACCGAGGCCATGCAGGAGCACCTCGCCGAGATCGGCCGGAGCGTCGATGACGGCGCCCATGCGGTGCTCATCCTCGATCAGGCCGGATGGCACGTGACGCCGAAACTGAAGGTGCCGGACAACATCACCTTGATGTTCCTGCCGCCGCGCTCACCGGAACTCAACCCAGTCGAAAACGTCTGGCAGTTCATGCGCGACAACTGGCTCTCCAACCGTATCTTCAAGGACTACGACGACATCGTCACCCATTGCTGCGCCGCATGGAACAAGCTCGTCGACCAGCCGTGGAAGATCATGTCCATCGGACTCCGCGAATGGGCGCATCGGTCATGATCACCGCTCGTTGGTAT	NA	NA	NA	NA
>prophage 2
NC_000914	Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence	536165	373088	427667	536165	transposase	Vibrio_phage(33.33%)	42	NA	NA
WP_010875060.1|373088_374639_+|transposase	IS21-like element ISRsp2 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.3	1.2e-114
WP_012708757.1|374650_375427_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	46.3	9.5e-57
WP_164924771.1|375536_375992_+	RES domain-containing protein	NA	NA	NA	NA	NA
WP_010875313.1|376353_377658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875314.1|377641_378685_+	caspase family protein	NA	NA	NA	NA	NA
WP_010875315.1|378697_380347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875316.1|381008_381434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010875317.1|382211_383180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875318.1|383209_384220_+	DUF1353 domain-containing protein	NA	A0A2I7QRW7	Vibrio_phage	40.3	5.3e-07
WP_010875319.1|384539_385781_-	response regulator	NA	NA	NA	NA	NA
WP_010875320.1|385781_386237_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010875321.1|386248_389368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164924755.1|389902_390691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875322.1|390617_391583_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_010875325.1|394377_394800_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_010875326.1|394796_395054_-	plasmid stability protein stbC	NA	NA	NA	NA	NA
WP_165447176.1|395372_395669_+	DUF2604 domain-containing protein	NA	NA	NA	NA	NA
WP_010875328.1|395661_396279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875329.1|396275_396764_+	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA	NA
WP_010875330.1|396766_398326_+	E2 ligase fold family C protein	NA	NA	NA	NA	NA
WP_164924756.1|399043_399301_+	hypothetical protein	NA	A0A2I7REY7	Vibrio_phage	49.2	2.2e-10
WP_010875331.1|399638_400460_-	YecA family protein	NA	NA	NA	NA	NA
WP_010875332.1|400456_401992_-|transposase	IS66-like element IS693 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	35.4	1.2e-74
WP_010875333.1|402040_402394_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_010875334.1|402390_402849_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_193377912.1|402927_403185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164923822.1|403557_405042_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_010875204.1|405038_405935_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	34.3	8.8e-30
WP_010875335.1|408161_408788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875336.1|408762_410061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875337.1|410106_411405_+	catalase	NA	NA	NA	NA	NA
WP_010875338.1|411458_412157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875339.1|412209_414000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875340.1|414048_416160_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010875341.1|416332_417052_-	DUF1353 domain-containing protein	NA	A0A2I7QXN9	Vibrio_phage	35.6	3.2e-06
WP_010875342.1|417968_418886_+	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA	NA
WP_010875343.1|420545_422534_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA	NA
WP_010875344.1|422475_423168_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010875345.1|423380_423866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875346.1|425162_425387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010875347.1|425421_426006_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	39.3	8.0e-16
WP_010875348.1|426008_427667_-|transposase	IS66-like element ISRsp1 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	40.2	1.2e-88
>prophage 1
NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2430033	82919	139285	2430033	protease,transposase	Acidithiobacillus_phage(18.18%)	41	NA	NA
WP_012706165.1|82919_83684_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_012706166.1|83674_84502_+|protease	serine protease	protease	A0A1V0SCZ1	Indivirus	26.3	1.1e-10
WP_012706167.1|84652_85711_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	52.7	1.7e-16
WP_012708757.1|85757_86534_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	46.3	9.5e-57
WP_010875060.1|86545_88096_-|transposase	IS21-like element ISRsp2 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.3	1.2e-114
WP_012706170.1|90669_91413_-	ETC complex I subunit	NA	NA	NA	NA	NA
WP_012706171.1|91904_92423_-	Hsp20 family protein	NA	H6WG27	Cyanophage	42.1	3.1e-19
WP_012706174.1|93780_94194_-	heme-binding protein	NA	NA	NA	NA	NA
WP_012706175.1|94521_95541_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_164923778.1|95706_97209_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	7.6e-18
WP_164924027.1|97407_98379_+	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_012706178.1|98416_99475_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012706179.1|99511_101203_+	GMC family oxidoreductase	NA	NA	NA	NA	NA
WP_012706180.1|101204_101900_+	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA	NA
WP_164923779.1|102010_102565_+	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA	NA
WP_164923780.1|102497_104249_+	GMC family oxidoreductase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012706183.1|104278_105001_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012706184.1|105041_106007_+	sugar kinase	NA	NA	NA	NA	NA
WP_012706185.1|106003_107287_+	D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	NA	NA	NA	NA	NA
WP_012706186.1|107548_108634_+	hydrolase	NA	NA	NA	NA	NA
WP_012706187.1|108743_109787_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	46.2	3.6e-83
WP_164923781.1|109988_110933_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_164923782.1|111205_111454_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_164923783.1|111997_113029_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_012706191.1|113079_113841_-	sugar ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	8.8e-15
WP_012706192.1|113851_115048_-	alanine racemase	NA	NA	NA	NA	NA
WP_012706194.1|115522_117187_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_012706195.1|117289_118366_+	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA	NA
WP_012706196.1|118369_119920_+	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.0	1.4e-11
WP_012706197.1|119916_120954_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012706198.1|121053_122178_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_164923784.1|122275_123277_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_012706200.1|123958_126235_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_012706207.1|129407_130121_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012706208.1|130353_131259_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012706209.1|131547_133332_+	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
WP_164924028.1|133315_133645_+	hypothetical protein	NA	A0A076GD42	Sinorhizobium_phage	71.6	1.0e-36
WP_012706213.1|134348_136811_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	35.9	4.7e-25
WP_012706215.1|137228_137831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012706216.1|137987_138140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012706218.1|138808_139285_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2430033	853092	902791	2430033	integrase,protease,transposase	Leptospira_phage(40.0%)	42	872387:872402	901840:901855
WP_012706579.1|853092_854475_+|transposase	IS1380-like element ISRsp7 family transposase	transposase	NA	NA	NA	NA
WP_015886978.1|854880_855069_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_015886711.1|856661_857840_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_012708196.1|857852_858713_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	34.8	3.6e-33
WP_015886980.1|858889_860158_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_015886981.1|860234_860822_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_164923863.1|860920_862033_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_015886983.1|862032_865146_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_015886985.1|866099_866912_+	oxidoreductase	NA	NA	NA	NA	NA
WP_164923864.1|867131_867365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164923865.1|869628_869838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165447128.1|870473_871550_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_164924066.1|871751_873593_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	34.2	2.8e-14
872387:872402	attL	CCAATCGCGGCTGGCC	NA	NA	NA	NA
WP_015886994.1|873880_874189_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_164924067.1|874205_874346_+	CxxxxCH/CxxCH domain-containing protein	NA	NA	NA	NA	NA
WP_164923867.1|874932_875748_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_193377872.1|876032_876707_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015887001.1|876826_877846_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015887002.1|877868_879152_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_015887003.1|879148_879679_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_015887004.1|879675_881094_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_015887005.1|881218_882112_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_015887006.1|882124_882718_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015887007.1|882835_884059_+	MFS transporter	NA	NA	NA	NA	NA
WP_015887008.1|884216_884645_+	OsmC family protein	NA	NA	NA	NA	NA
WP_015887009.1|884965_886447_+	Do family serine endopeptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	29.4	6.3e-25
WP_015887010.1|886483_886666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015887011.1|887020_887611_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015887012.1|887603_888833_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_015887013.1|889208_889490_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_015887014.1|889479_889815_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_018237856.1|890338_890521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015887017.1|890991_891246_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_015887018.1|891397_892192_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
WP_015887019.1|892178_893486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015887020.1|893588_893852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015887021.1|893844_895407_-	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	33.7	7.3e-24
WP_164924068.1|896846_897155_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015887024.1|897147_898404_+	HipA domain-containing protein	NA	NA	NA	NA	NA
WP_164923869.1|899756_899963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012708196.1|900739_901600_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	34.8	3.6e-33
WP_015886711.1|901612_902791_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
901840:901855	attR	GGCCAGCCGCGATTGG	NA	NA	NA	NA
>prophage 3
NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2430033	924389	988569	2430033	transposase	Acidithiobacillus_phage(28.57%)	58	NA	NA
WP_010875060.1|924389_925940_-|transposase	IS21-like element ISRsp2 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.3	1.2e-114
WP_164923873.1|927331_928411_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_015887044.1|928604_931625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164923874.1|931833_932601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164923875.1|932597_933641_-	GSCFA domain-containing protein	NA	NA	NA	NA	NA
WP_015887047.1|934128_934512_-	GNAT family N-acetyltransferase	NA	B4UTR3	Rhizobium_phage	74.0	1.2e-49
WP_164924069.1|934717_935302_+	methyltransferase domain-containing protein	NA	B4UTR6	Rhizobium_phage	69.0	9.1e-44
WP_015887049.1|935871_936648_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_015887050.1|937008_938007_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA	A0A1V0SAI8	Catovirus	37.5	5.9e-43
WP_015887051.1|938010_939171_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	A0A2K9L470	Tupanvirus	31.8	5.1e-30
WP_015887052.1|939167_939872_+	pseudaminic acid cytidylyltransferase	NA	A0A1B1IVD3	uncultured_Mediterranean_phage	29.9	3.2e-11
WP_015887053.1|939846_940980_+	UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase	NA	NA	NA	NA	NA
WP_015887054.1|941146_942199_+	pseudaminic acid synthase	NA	NA	NA	NA	NA
WP_015887055.1|942318_943650_-	RkpR, polysaccharide export protein	NA	NA	NA	NA	NA
WP_015887056.1|943650_944310_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.4	4.5e-07
WP_015887057.1|944306_945077_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_015887060.1|946481_947396_-	HEPN domain-containing protein	NA	NA	NA	NA	NA
WP_015887063.1|948025_948457_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_015887064.1|948453_948936_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_164924070.1|949738_951910_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_015887066.1|951928_952438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164923876.1|952451_953045_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_193377873.1|953271_953532_+	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
WP_015887068.1|953723_954221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015887069.1|954355_954649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_193377874.1|955128_955602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015887073.1|956647_956809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015887076.1|958584_958860_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_015887077.1|958856_959120_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_164923877.1|959571_959859_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_015887079.1|959855_960203_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_015887080.1|960281_961934_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	43.8	6.0e-109
WP_015887081.1|961936_962521_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
WP_015887083.1|963006_963318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015887084.1|963427_963706_-	BrnA antitoxin family protein	NA	NA	NA	NA	NA
WP_164923878.1|963689_963992_-	BrnT family toxin	NA	NA	NA	NA	NA
WP_164923879.1|964715_964919_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_015887087.1|965218_965464_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA	NA
WP_015887088.1|965463_965901_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_164924072.1|966999_967263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164924073.1|967353_967569_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_015887093.1|968130_968445_+	succinoglycan biosynthesis protein exoi	NA	NA	NA	NA	NA
WP_164923880.1|968581_969574_+	adenosine kinase	NA	NA	NA	NA	NA
WP_010875070.1|971121_973206_-	recombinase family protein	NA	NA	NA	NA	NA
WP_010875067.1|974121_974391_-	Y4bD/Y4pK family protein	NA	NA	NA	NA	NA
WP_015887098.1|975224_975962_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.9	3.7e-58
WP_164923881.1|976103_977164_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_015887101.1|977470_977827_-	type II toxin-antitoxin system HicB family antitoxin	NA	R4JJS9	Burkholderia_phage	48.2	2.0e-25
WP_015887102.1|977823_978078_-	type II toxin-antitoxin system HicA family toxin	NA	R4JMD3	Burkholderia_phage	48.8	2.2e-15
WP_164923882.1|978718_979099_+	helix-turn-helix domain-containing protein	NA	A0A223W054	Agrobacterium_phage	43.5	9.8e-15
WP_015887105.1|979305_980163_-	Hint domain-containing protein	NA	NA	NA	NA	NA
WP_015887109.1|981970_982246_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_015887110.1|982300_982687_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_015887111.1|982686_982941_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA	NA
WP_015887113.1|983450_983726_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_193377875.1|983706_984057_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_015887115.1|984279_985638_+|transposase	IS5-like element ISRsp18 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	44.0	9.2e-47
WP_015887115.1|987210_988569_-|transposase	IS5-like element ISRsp18 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	44.0	9.2e-47
>prophage 4
NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2430033	1338307	1402922	2430033	integrase,transposase	Leptospira_phage(15.38%)	44	1337950:1338009	1355808:1357356
1337950:1338009	attL	TTGGGAATCTGGAGGGTTCTGTGAGGTCCGGCCGCTTTGGATGCAGCATTCGCTGATCGG	NA	NA	NA	NA
WP_015886711.1|1338307_1339486_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_012708196.1|1339498_1340359_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	34.8	3.6e-33
WP_015887442.1|1340556_1341573_-	acyltransferase	NA	NA	NA	NA	NA
WP_015887443.1|1341672_1343055_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_015887446.1|1344655_1345687_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_015887447.1|1345714_1346680_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_164923931.1|1346712_1348272_-	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_164923933.1|1348423_1349899_+	DUF4038 domain-containing protein	NA	NA	NA	NA	NA
WP_015887450.1|1349895_1351197_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_015887451.1|1351758_1353198_+	DUF4214 domain-containing protein	NA	NA	NA	NA	NA
WP_012708196.1|1353457_1354318_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	34.8	3.6e-33
WP_015886711.1|1354330_1355509_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_015887452.1|1355909_1356644_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	39.7	1.9e-22
WP_015887453.1|1356657_1358541_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	35.5	2.3e-104
1355808:1357356	attR	CCGATCAGCGAATGCTGCATCCAAAGCGGCCGGACCTCACAGAACCCTCCAGATTCCCAAGGCTGCGCAAATCAGATTCAAGACTGTCTTTTGGAGGCAGTCATGGGTGTTTTGGATCGTCTGATCCTTCGGGACGAGCAGTGGGAGCGGATATCGCATCACATCATTGGTGACGAGCGCACGCGCGGTTCGTCGGGCCGTGACAACCGCATGTTCGTCGAAGCGGTGCTTTGGATTGTGCGGACCGGTTCGCCCTGGCGTGACCTGCCGGAAGTGTTCGGCGAATGGAACAGTGTCTTCCGCCGCTTCAGCCGTTGGAGCCAGAAGGGCATCTGGTGGCGCATCTTCGCGGCGATGTCGGACGACCCTGACTTCGAATACCTGATCGTCGATTCCACCATCGTCCGCGCCCATCAGCACGATCAAGCCCTTGGCCGTTCACGCGGCGGCTTGAGCACCAAGATCCACATGGCTGTGCGTGGTCTCGGCTGCCCGGTCCGCTTCACCCTTACCGCAGGCCAGAAAGGCGATGCGCCGCAAGCCGATGCCCTGATCGCGGGCCTACCCGCAGACGTCGTCATGGCCGACACCGCCTATGACAGCGATCGTCTGCGCAAGGCCATCGCCGACAAGGGTGCTGTGGCGGTGATCCCAAACAACCCGTCCCGCGCGCAAAAACACCCGCTGGACAAGCACCTCTATGCCCAGCGGCACCTGATCGAGTGCTGCTTCGCCAAACTCAAGCAGTTCCGAAGGGTCGCCACCCGCTTCGAAAAAACTGCCAGAAACTACCGCGCCGTCGTCACTATCGCAGCTATCGTGCTATGGATCAGATAAGTGTCCACACTTCCTAATGCTTCAAGGCCCGCCCGAACACACGCGAGAGTCGCTCGGCAAAGGCGCGCGCGTCCTCGGGTTTGTCGCCGTCGAGAACACGGGCTTGGTCGAAAAGCAGCTTGACCGCGTCTTCGCGGAAGGTGTTGTCCTCCGCCGGGCAAGCGGCGAGTGACGCGATCAGCGCGTGGCCGGGATTGATCTCGAGCACCGGCTTGGCCGCGCCCTCATTGCGTCCGGCCCCCTGCAGCATCTTCTGAAGCTGGCGATCGGGGCCGTGCTCGGGGGCGACCAGGCACACGGCGCTTTCGGTCAGTCGGTCGGAGGTCCTGACGTCGGAGACTGCATCGCCGAGCGTCGCCTTGGCGAAGGTCACGAACTCAGCCACTGCCGGGCTCGTCTCGGACGCGGCGGCGTCGGAGTTCTGTTTGGCGATGCCGGCGAGATCCGCCGCACCCTGGGTGATCGACTTGAAGGGCTTGCCCTCGAAATCCGGCGCCGTCGTCACCCAGAAACTGTCAACCGGGTCGGTCAGGAGCAGCACTTCGATGCCGCGGGCGCGGAACCCCTCGAGCTGGGGTGAGGCCTGCAACTGGGCGAGATTGTCGCCGGTCAGGTAGTAGATCGCCGACTGGCCGTCCTTCATCTCTTTGACGTAGTTGCTAAGCCCGCGCGGCGTGTCGTCGGAAGCGGTTCGGAAACGGGCAAGGGCAAG	NA	NA	NA	NA
WP_015887454.1|1358931_1361133_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_015887455.1|1361157_1362114_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_015887456.1|1362118_1363303_+	acetate kinase	NA	NA	NA	NA	NA
WP_015887457.1|1363321_1364107_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_015887458.1|1364135_1365611_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_015887459.1|1365738_1367007_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA	NA
WP_015887460.1|1367232_1368060_+	MerR family transcriptional regulator	NA	A0A7Q0	Microcystis_virus	32.1	1.1e-05
WP_015887461.1|1368438_1369608_+	acyltransferase	NA	W6MVL2	Pseudomonas_phage	32.0	1.4e-19
WP_164923934.1|1369624_1370740_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	34.3	1.0e-11
WP_015887463.1|1370729_1371752_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_015887464.1|1371751_1373545_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.8	8.4e-40
WP_015887465.1|1373613_1374660_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
WP_164923935.1|1374717_1374936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015887466.1|1375420_1377019_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015887467.1|1377072_1377996_+	oligopeptide ABC transporter permease OppB	NA	NA	NA	NA	NA
WP_015887468.1|1377988_1379119_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_015887469.1|1379120_1380722_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.4	2.8e-18
WP_164923936.1|1380825_1381023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164924088.1|1381443_1383330_+	P-loop NTPase	NA	NA	NA	NA	NA
WP_015887475.1|1386262_1387114_+	exopolysaccharide production protein ExoY	NA	NA	NA	NA	NA
WP_164924089.1|1388086_1389541_-	polysaccharide biosynthesis/export family protein	NA	NA	NA	NA	NA
WP_015887479.1|1389540_1390431_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_015887480.1|1390734_1391970_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_015887481.1|1391966_1393085_-	glycosyltransferase family 4 protein	NA	J7Q7I8	Aeropyrum_coil-shaped_virus	29.3	5.5e-05
WP_015887483.1|1393523_1394846_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_015887484.1|1395336_1396137_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_015887485.1|1396164_1397721_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.3	1.1e-27
WP_015887486.1|1397750_1400063_+	AGE family epimerase/isomerase	NA	A0A1V0SH58	Hokovirus	27.5	1.5e-25
WP_015887487.1|1400188_1401523_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_012706504.1|1401743_1402922_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	27.5	6.6e-09
