The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012125	Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594, complete sequence	4833080	917586	993432	4833080	terminase,plate,portal,integrase,capsid,protease,tail,tRNA,head,holin	Cronobacter_phage(58.54%)	78	954907:954922	999449:999464
WP_024131660.1|917586_918639_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	56.4	5.2e-106
WP_000357961.1|918743_920525_-	AIPR family protein	NA	NA	NA	NA	NA
WP_001008375.1|920536_921106_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	39.8	5.4e-33
WP_000460872.1|921485_921989_+	phage regulatory CII family protein	NA	F1BUN6	Cronobacter_phage	71.3	1.7e-59
WP_000643375.1|921998_922226_+	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_000996837.1|922215_922641_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
WP_000022789.1|922640_923042_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
WP_000057334.1|923109_923340_+	DUF2732 family protein	NA	NA	NA	NA	NA
WP_000279400.1|923330_924191_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	F1BUN1	Cronobacter_phage	83.5	1.5e-132
WP_000170881.1|924187_926209_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.6	3.6e-297
WP_000960960.1|926321_926540_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	49.1	2.8e-06
WP_001552031.1|926513_926837_-	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
WP_000038208.1|926833_927895_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.1	2.3e-162
WP_001151943.1|927891_929667_-	hypothetical protein	NA	F1BUM5	Cronobacter_phage	82.8	6.3e-290
WP_000018801.1|929827_930631_+|capsid	GPO family capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	56.4	9.1e-79
WP_000550496.1|930692_931715_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
WP_001218537.1|931718_932420_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
WP_001680743.1|932516_932969_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	82.7	1.6e-64
WP_000084220.1|932965_933472_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.8	5.2e-64
WP_000220203.1|934172_935300_+	DUF2586 family protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
WP_000166743.1|935296_935752_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
WP_001154425.1|935761_936055_+|holin	phage holin family protein	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
WP_000175560.1|936051_936393_+	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
WP_000376370.1|936392_936725_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	6.7e-36
WP_000411339.1|936871_937129_+|tail	putative phage tail assembly chaperone	tail	A5X9I7	Aeromonas_virus	63.4	3.6e-21
WP_000811084.1|937316_939287_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	67.9	7.1e-258
WP_001002797.1|939283_939613_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
WP_000136928.1|939609_940794_+|plate	baseplate J/gp47 family protein	plate	F1BUK6	Cronobacter_phage	78.1	1.7e-177
WP_001001824.1|940786_941374_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.1e-89
WP_000122988.1|943553_944108_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	93.9	1.8e-94
WP_000267958.1|944097_944823_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.8	3.8e-68
WP_000200787.1|944794_945340_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.5	4.3e-64
WP_000977531.1|945339_947043_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	4.4e-224
WP_001229273.1|947564_948062_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_001024852.1|948378_950064_-	aspartate:alanine antiporter	NA	NA	NA	NA	NA
WP_000680850.1|950334_950712_+	inner membrane protein YbjM	NA	NA	NA	NA	NA
WP_001259135.1|951175_951466_+	YbjC family protein	NA	NA	NA	NA	NA
WP_000075298.1|951449_952172_+	nitroreductase NfsA	NA	NA	NA	NA	NA
WP_000684361.1|952229_953132_+	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	34.0	3.5e-34
WP_000624809.1|953228_953705_+	YbjN domain-containing protein	NA	NA	NA	NA	NA
WP_000125769.1|954053_955166_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
954907:954922	attL	ACGCCAAAAATAAAGA	NA	NA	NA	NA
WP_001000698.1|955253_956387_+	putrescine ABC transporter ATP-binding subunit PotG	NA	G3M9Y6	Bacillus_virus	34.9	6.5e-30
WP_000105453.1|956396_957350_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
WP_001061620.1|957346_958192_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
WP_000505788.1|958265_958739_+	YbjO family protein	NA	NA	NA	NA	NA
WP_001149779.1|958781_959912_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	26.7	2.8e-25
WP_000399323.1|960194_961538_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_000655399.1|961567_961888_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000644018.1|961897_963385_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_000737538.1|963602_964334_-	ABC transporter substrate-binding protein ArtJ	NA	NA	NA	NA	NA
WP_000895396.1|964570_965239_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
WP_001001677.1|965238_965955_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
WP_000756588.1|965961_966693_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000027185.1|966710_967439_-	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	35.8	6.7e-28
WP_001270724.1|967668_968184_-	lipoprotein	NA	NA	NA	NA	NA
WP_050767917.1|968282_968636_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001202283.1|968632_969463_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.7	2.3e-08
WP_000866897.1|969459_970473_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000069000.1|970568_972002_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000566422.1|972012_973014_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_000815325.1|973052_974771_-	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.0	7.1e-28
WP_001667939.1|974928_975897_-	NADH oxidoreductase	NA	NA	NA	NA	NA
WP_000458777.1|975908_977561_-	hydroxylamine reductase	NA	NA	NA	NA	NA
WP_000491118.1|977704_978604_-	lysine exporter LysO family protein	NA	NA	NA	NA	NA
WP_000599770.1|978805_980464_+	ATP-dependent endonuclease	NA	NA	NA	NA	NA
WP_012664443.1|980460_981411_-	VirK/YbjX family protein	NA	NA	NA	NA	NA
WP_000125882.1|982667_984614_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	1.6e-39
WP_000447499.1|984743_984965_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|985288_985609_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934064.1|985639_987916_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_001117984.1|988128_988326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|988487_988865_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_000097893.1|989529_990207_-	hydrolase	NA	NA	NA	NA	NA
WP_000809969.1|990226_991087_-	pirin family protein	NA	NA	NA	NA	NA
WP_000597928.1|991195_992107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001040187.1|992197_992416_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_001539595.1|992343_992727_-	membrane protein	NA	NA	NA	NA	NA
WP_001241650.1|992727_993432_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
999449:999464	attR	TCTTTATTTTTGGCGT	NA	NA	NA	NA
>prophage 2
NC_012125	Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594, complete sequence	4833080	1061419	1108716	4833080	plate,lysis,tail,head,holin	Salmonella_phage(65.0%)	61	NA	NA
WP_001262312.1|1061419_1062712_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	8.5e-252
WP_000065276.1|1062756_1063005_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1063045_1063285_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_077906306.1|1063327_1064485_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	1.8e-216
WP_000017137.1|1064447_1067375_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	99.8	0.0e+00
WP_001539619.1|1067501_1067852_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
WP_000551854.1|1067873_1068044_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	51.0	3.3e-07
WP_000373338.1|1068442_1068649_+	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	67.6	1.6e-16
WP_000997167.1|1068681_1069614_-	hypothetical protein	NA	K7PGT0	Enterobacteria_phage	53.2	9.6e-88
WP_001170496.1|1069610_1070084_-	hypothetical protein	NA	K7PLT9	Enterobacteria_phage	59.1	2.3e-53
WP_001151473.1|1070234_1070702_-	helix-turn-helix domain-containing protein	NA	K7PHG0	Enterobacteria_phage	83.9	3.0e-66
WP_000145711.1|1070715_1070943_+	helix-turn-helix domain-containing protein	NA	K7PKS2	Enterobacteria_phage	95.9	1.5e-34
WP_015702794.1|1070908_1071283_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	3.3e-63
WP_000024045.1|1071374_1072202_+	replication protein	NA	K7PGT1	Enterobacteria_phage	48.5	8.3e-51
WP_000801767.1|1072198_1072894_+	hypothetical protein	NA	G8C7U6	Escherichia_phage	45.9	1.5e-56
WP_000664367.1|1072907_1073705_+	hypothetical protein	NA	A0A1R3Y5Q8	Salmonella_virus	81.9	1.7e-32
WP_001217669.1|1074225_1074459_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_014343878.1|1074575_1074824_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_000929798.1|1074858_1075461_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	1.7e-109
WP_001096557.1|1075669_1076281_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	96.1	3.6e-91
WP_001617856.1|1076277_1076424_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047630.1|1076413_1077211_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	4.0e-151
WP_024131667.1|1077382_1077592_+	hypothetical protein	NA	H6WRZ2	Salmonella_phage	98.1	3.5e-22
WP_000798706.1|1077756_1078206_-	lipoprotein	NA	NA	NA	NA	NA
WP_001539630.1|1078566_1079253_-	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	99.1	1.8e-131
WP_077905918.1|1079528_1079858_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.2e-55
WP_000984586.1|1079841_1080294_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_077906338.1|1080311_1080761_+|lysis	lysis protein	lysis	H6WRZ5	Salmonella_phage	83.2	2.0e-59
WP_001064345.1|1080978_1081503_+	Rha family transcriptional regulator	NA	G8C7W4	Escherichia_phage	96.5	9.8e-90
WP_001118127.1|1081565_1082186_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	100.0	5.0e-109
WP_001130806.1|1082196_1083819_+	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	99.3	0.0e+00
WP_000113509.1|1083818_1085288_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.4	5.8e-281
WP_157862692.1|1085172_1085910_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	87.1	2.5e-99
WP_000873182.1|1085924_1087157_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_000128058.1|1087161_1087659_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	100.0	3.0e-88
WP_000627465.1|1087670_1088612_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	98.7	2.5e-176
WP_001040692.1|1088653_1089022_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	98.4	5.7e-60
WP_001125676.1|1088987_1089395_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	95.6	3.0e-70
WP_000008735.1|1089391_1089946_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	98.9	4.1e-94
WP_001142487.1|1089932_1090322_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	97.7	3.0e-67
WP_000389380.1|1090296_1090860_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	7.6e-80
WP_001135546.1|1090863_1092009_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.8	5.9e-164
WP_000535993.1|1092021_1092465_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.5	6.0e-56
WP_001540657.1|1092468_1092921_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	77.2	8.5e-58
WP_000990868.1|1093098_1094733_+	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	45.0	6.8e-97
WP_000346977.1|1094732_1095383_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.9e-56
WP_000388505.1|1095386_1095689_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042299.1|1095691_1096723_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.7	3.3e-97
WP_000826019.1|1096719_1097055_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000818611.1|1097061_1097439_-	Arc family DNA-binding protein	NA	A0A0P0ZBD1	Stx2-converting_phage	75.4	6.7e-16
WP_000414162.1|1097539_1097698_+	Arc family DNA-binding protein	NA	A0A077KAX5	Edwardsiella_phage	71.4	2.1e-11
WP_001028071.1|1097771_1098335_+	Bro-N domain-containing protein	NA	H6WRU8	Salmonella_phage	59.0	4.5e-32
WP_000377246.1|1098399_1099185_+	Bro-N domain-containing protein	NA	A0A2L1IV39	Escherichia_phage	62.7	2.2e-85
WP_012664453.1|1099248_1100004_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	78.1	7.7e-104
WP_001270647.1|1100139_1100493_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197090.1|1100493_1101693_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	98.2	2.0e-215
WP_000049934.1|1101689_1102370_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	97.3	1.2e-127
WP_001096992.1|1102369_1103782_+	hypothetical protein	NA	A0A1B0V7G4	Salmonella_phage	81.9	9.1e-207
WP_001287103.1|1103788_1104205_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	94.0	8.4e-68
WP_071820468.1|1105021_1106512_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.1	5.2e-253
WP_000790151.1|1106916_1108716_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	41.2	1.2e-22
>prophage 3
NC_012125	Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594, complete sequence	4833080	1323835	1375407	4833080	terminase,portal,transposase,lysis,protease,head,holin	Salmonella_phage(39.66%)	66	NA	NA
WP_086011253.1|1323835_1325090_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
WP_000484427.1|1325091_1326009_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	53.5	1.1e-75
WP_000639889.1|1326530_1326773_+	YfdY family protein	NA	NA	NA	NA	NA
WP_000955742.1|1327048_1328440_-	phosphoglycerate transporter PgtP	NA	NA	NA	NA	NA
WP_024131674.1|1328875_1330069_+	phosphoglycerate transport regulator PgtC	NA	NA	NA	NA	NA
WP_000678493.1|1330065_1332072_+	two-component system sensor histidine kinase PgtB	NA	NA	NA	NA	NA
WP_000930836.1|1332061_1333309_+	two-component system response regulator PgtA	NA	NA	NA	NA	NA
WP_000716014.1|1333576_1334515_+|protease	omptin family outer membrane protease PgtE	protease	NA	NA	NA	NA
WP_001208732.1|1334776_1334980_-	hypothetical protein	NA	C6ZR24	Salmonella_phage	97.0	2.7e-32
WP_001283605.1|1335076_1335712_-	DUF5420 family protein	NA	A0A075B8I7	Enterobacteria_phage	89.1	2.5e-108
WP_000024386.1|1336913_1337105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001017849.1|1337106_1337901_-	ead/Ea22-like family protein	NA	B9UDM4	Salmonella_phage	50.2	3.8e-53
WP_000065341.1|1337897_1338299_-	ParB/RepB/Spo0J family partition protein	NA	S4TTI6	Salmonella_phage	100.0	2.9e-73
WP_000070064.1|1338295_1338529_-	hypothetical protein	NA	S4TVX5	Salmonella_phage	46.2	5.6e-13
WP_157862693.1|1338525_1338678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024131676.1|1338674_1339154_-	hypothetical protein	NA	Q5G8U6	Enterobacteria_phage	54.9	3.7e-27
WP_000041527.1|1339495_1339777_-	HNH endonuclease	NA	K7PHS8	Enterobacteria_phage	97.8	1.4e-50
WP_001214776.1|1339763_1339940_-	DUF2737 family protein	NA	K7PL43	Enterobacteria_phage	91.4	4.5e-23
WP_000097968.1|1339950_1340244_-	DUF2856 family protein	NA	A0A192Y654	Salmonella_phage	57.7	4.9e-22
WP_001061371.1|1340261_1340810_-	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	95.6	1.3e-100
WP_001046989.1|1341324_1342032_-	recombinase	NA	A0A192Y857	Salmonella_phage	94.5	4.1e-131
WP_000902090.1|1342028_1342172_-	hypothetical protein	NA	A0A1R3Y5R4	Salmonella_virus	97.9	9.3e-19
WP_000156731.1|1342161_1342350_-	DUF5444 family protein	NA	I6S647	Salmonella_phage	100.0	3.7e-31
WP_012664477.1|1342330_1342504_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	I6R987	Salmonella_phage	96.2	4.4e-23
WP_000776962.1|1342573_1342888_-	superinfection exclusion protein	NA	E7C9Q4	Salmonella_phage	100.0	1.9e-56
WP_000532743.1|1343039_1343240_-	hypothetical protein	NA	A0A2H4FQS9	Salmonella_phage	89.4	1.8e-28
WP_001110034.1|1343513_1343813_-	hypothetical protein	NA	A0A1R3Y5U4	Salmonella_virus	96.0	1.4e-48
WP_000680460.1|1343850_1344018_-	hypothetical protein	NA	A0A0K2FH54	Enterobacter_phage	53.8	2.2e-11
WP_000216170.1|1344026_1344365_-	hypothetical protein	NA	E7C9Q7	Salmonella_phage	94.6	1.9e-54
WP_023138238.1|1344730_1345363_-	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	43.0	2.8e-30
WP_000447947.1|1345463_1345679_+	helix-turn-helix transcriptional regulator	NA	Q716D6	Shigella_phage	69.0	1.1e-18
WP_000424136.1|1345787_1346078_+	hypothetical protein	NA	I6RSP4	Salmonella_phage	99.0	9.0e-45
WP_000062368.1|1346239_1346938_+	helix-turn-helix domain-containing protein	NA	A0A0P0ZC04	Stx2-converting_phage	55.1	3.6e-55
WP_012664479.1|1347048_1348929_+	toprim domain-containing protein	NA	A0A0M4R313	Salmonella_phage	98.6	0.0e+00
WP_001064630.1|1348929_1349208_+	hypothetical protein	NA	C6ZR54	Salmonella_phage	94.6	1.0e-45
WP_000736885.1|1349281_1349869_+	HNH endonuclease	NA	A0A1B1W266	Salmonella_phage	47.2	5.3e-36
WP_000650394.1|1349870_1350299_+	recombination protein NinB	NA	K7PKW7	Enterobacterial_phage	79.5	3.9e-60
WP_001254237.1|1350295_1350478_+	NinE family protein	NA	C6ZR57	Salmonella_phage	98.3	3.7e-28
WP_000566855.1|1350474_1350651_+	protein ninF	NA	A0A0M4S6T3	Salmonella_phage	94.8	1.9e-26
WP_001008212.1|1350906_1351302_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0M4REJ2	Salmonella_phage	97.7	1.7e-70
WP_000149925.1|1351298_1351502_+	phage NinH family protein	NA	A0A075B8J4	Enterobacteria_phage	100.0	7.2e-33
WP_000219132.1|1351482_1351662_+	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	98.3	1.6e-23
WP_000027546.1|1351658_1352177_+	DUF1133 family protein	NA	A0A1R3Y5U9	Salmonella_virus	97.7	5.5e-93
WP_000783734.1|1352637_1352961_+|holin	phage holin, lambda family	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
WP_000229384.1|1352944_1353421_+	glycoside hydrolase family protein	NA	K7PKV2	Enterobacteria_phage	99.4	8.3e-88
WP_000092299.1|1353417_1353885_+|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	94.2	4.8e-72
WP_001177704.1|1354097_1354784_+	Rha family transcriptional regulator	NA	A0A192Y918	Salmonella_phage	99.6	1.8e-123
WP_000807788.1|1355226_1355469_+	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
WP_000113730.1|1355471_1355915_+	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	93.8	1.2e-64
WP_000138925.1|1355911_1357390_+|terminase	PBSX family phage terminase large subunit	terminase	A5VW75	Enterobacteria_phage	65.4	6.0e-177
WP_000818368.1|1357391_1359590_+|portal	portal protein	portal	A0A088CQ69	Enterobacteria_phage	97.4	0.0e+00
WP_000372575.1|1359680_1360574_+	scaffold protein	NA	A0A088CPT0	Enterobacteria_phage	99.0	4.3e-130
WP_000013264.1|1360592_1361846_+	hypothetical protein	NA	A5VW72	Enterobacteria_phage	99.0	1.8e-235
WP_001389518.1|1361887_1362076_+	hypothetical protein	NA	A0A088CPR7	Enterobacteria_phage	100.0	2.9e-28
WP_001140510.1|1362056_1362518_+|head	head DNA stabilization protein	head	A5VW70	Enterobacteria_phage	100.0	7.1e-84
WP_001122373.1|1362527_1363946_+	packaged DNA stabilization protein gp10	NA	A0A2D1GM00	Escherichia_phage	98.1	1.5e-273
WP_000774921.1|1363949_1364588_+	hypothetical protein	NA	A0A088CPT1	Enterobacteria_phage	96.2	4.2e-87
WP_000627591.1|1364587_1365043_+	DUF2824 family protein	NA	B8K1I4	Salmonella_phage	98.7	2.0e-86
WP_000964874.1|1365045_1365741_+	hypothetical protein	NA	G5DA80	Enterobacteria_phage	99.4	1.8e-91
WP_000246928.1|1365750_1367046_+	phage DNA ejection protein	NA	Q716G3	Shigella_phage	91.4	6.2e-186
WP_001029839.1|1367045_1369043_+	hypothetical protein	NA	Q716G2	Shigella_phage	91.0	0.0e+00
WP_077906307.1|1369175_1369475_+	hypothetical protein	NA	Q76H12	Enterobacteria_phage	99.0	7.4e-50
WP_000532177.1|1369495_1369744_-	Arc family DNA-binding protein	NA	Q76H48	Enterobacteria_phage	100.0	1.8e-38
WP_012664485.1|1369879_1371631_+	right-handed parallel beta-helix repeat-containing protein	NA	I6S5Y0	Salmonella_phage	87.5	3.0e-58
WP_110161801.1|1371694_1372834_-	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	25.8	3.6e-20
WP_000377767.1|1374465_1375407_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	87.8	3.2e-147
>prophage 4
NC_012125	Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594, complete sequence	4833080	1611787	1620956	4833080	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
WP_000569173.1|1611787_1612735_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824848.1|1612718_1613450_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1613430_1613538_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1613597_1614329_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272854.1|1614551_1616237_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	8.1e-279
WP_000598637.1|1616233_1616953_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1616999_1617467_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000703137.1|1618223_1618682_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195341.1|1618922_1620956_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 5
NC_012125	Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594, complete sequence	4833080	1789352	1796601	4833080		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1789352_1789772_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_012664534.1|1789774_1791043_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.5	4.3e-224
WP_000208509.1|1791497_1791710_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|1791720_1791909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080669.1|1792167_1793361_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.0	1.5e-109
WP_000107439.1|1794010_1794322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377046.1|1794401_1795097_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.6	4.3e-08
WP_001157303.1|1795170_1796601_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 6
NC_012125	Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594, complete sequence	4833080	2699039	2788920	4833080	terminase,portal,integrase,protease,tail,tRNA,holin	Salmonella_phage(41.67%)	99	2693643:2693657	2777232:2777246
2693643:2693657	attL	AGGCGCTGGCGAAGG	NA	NA	NA	NA
WP_000938189.1|2699039_2699720_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	66.4	1.3e-73
WP_000374046.1|2700338_2700998_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|2701084_2701414_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2701410_2701692_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000548082.1|2701740_2702520_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000859416.1|2702545_2703094_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000140474.1|2703308_2704520_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2704577_2704895_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|2704939_2705353_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847732.1|2705526_2706189_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2706283_2706742_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420529.1|2706777_2708832_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|2708955_2709402_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950883.1|2709420_2711574_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202378.1|2711560_2712169_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288731.1|2712385_2712895_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001539650.1|2713251_2714304_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877172.1|2714375_2714828_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156451.1|2715012_2716773_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2716841_2717360_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001537784.1|2717459_2717627_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2717882_2718446_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433417.1|2718442_2720083_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333141.1|2720087_2721341_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053044.1|2721355_2723263_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086477.1|2723275_2725384_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000224080.1|2725482_2726592_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|2726588_2727131_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291723.1|2727296_2728307_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193762.1|2728514_2731127_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.4	6.3e-20
WP_000497441.1|2731553_2731745_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_001525490.1|2732014_2732701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989011.1|2732685_2732985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000334548.1|2733053_2733680_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_012664643.1|2734327_2735206_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.0	1.2e-172
WP_000143167.1|2735770_2736352_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_001144684.1|2736351_2738559_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	E5G6P0	Salmonella_phage	51.5	6.2e-77
WP_000178849.1|2738612_2738855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_192574529.1|2738893_2741359_-	DUF1983 domain-containing protein	NA	A0A0K2FI38	Escherichia_phage	66.4	7.5e-265
WP_045723188.1|2741274_2742243_-	host specificity protein J	NA	A0A2I6TCW5	Escherichia_phage	73.3	3.4e-128
WP_041030834.1|2742314_2743019_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	3.2e-67
WP_000606351.1|2742916_2743654_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
WP_001152415.1|2743663_2744359_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
WP_000877926.1|2744448_2744982_+	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_000725267.1|2745098_2745596_-	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000978294.1|2745694_2746027_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	60.6	7.4e-35
WP_010989010.1|2746023_2749011_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
WP_010989009.1|2749090_2749420_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_000478859.1|2749416_2749815_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_000132756.1|2749860_2750610_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000196703.1|2750621_2751023_-|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	2.0e-42
WP_000453192.1|2751019_2751586_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	95.7	2.1e-13
WP_000774239.1|2751566_2751866_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_001107905.1|2751858_2752182_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	60.4	6.6e-28
WP_077906341.1|2752272_2754354_-|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.3	3.1e-264
WP_001009210.1|2754277_2755825_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.0	1.4e-176
WP_000196190.1|2755821_2756028_-	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_000989240.1|2756024_2758163_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.5	2.2e-289
WP_000371784.1|2758119_2758653_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_110161804.1|2758949_2759138_-	hypothetical protein	NA	A0A0P0ZE50	Stx2-converting_phage	66.7	2.9e-12
WP_000984586.1|2759357_2759810_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_077905918.1|2759793_2760123_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.2e-55
WP_001539630.1|2760398_2761085_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	99.1	1.8e-131
WP_000993185.1|2761205_2761886_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.5	1.2e-60
WP_000801757.1|2761882_2762023_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_001096549.1|2762019_2762631_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
WP_000929804.1|2762839_2763442_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	6.3e-109
WP_001217670.1|2763776_2764016_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000207965.1|2764530_2764812_-	hypothetical protein	NA	Q5G8V2	Enterobacteria_phage	61.0	6.5e-16
WP_000224241.1|2764822_2765080_-	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
WP_001276150.1|2765082_2765346_-	hypothetical protein	NA	A0A2H4A316	Salmonella_phage	85.7	4.5e-19
WP_000113619.1|2765693_2766041_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	95.7	3.6e-56
WP_000800012.1|2766051_2766801_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
WP_001540689.1|2766803_2767787_-	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_012664651.1|2767871_2768246_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	1.9e-63
WP_000869364.1|2768211_2768448_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
WP_001009037.1|2768577_2768982_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	1.6e-71
WP_000551854.1|2769380_2769551_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	51.0	3.3e-07
WP_001539619.1|2769572_2769923_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
WP_000017137.1|2770049_2772977_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	99.8	0.0e+00
WP_001539618.1|2772939_2774097_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_001237031.1|2774139_2774379_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001670787.1|2774419_2774704_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
WP_001007939.1|2774681_2775911_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.4	2.9e-233
WP_000589087.1|2776408_2776888_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000812017.1|2776884_2777841_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
2777232:2777246	attR	CCTTCGCCAGCGCCT	NA	NA	NA	NA
WP_001168374.1|2777840_2778491_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000003307.1|2778522_2779098_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_014344135.1|2779094_2779259_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_000989182.1|2779522_2781145_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_000083343.1|2781129_2781867_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2781996_2783331_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001625993.1|2783348_2784248_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188414.1|2784350_2784938_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2784999_2785383_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179978.1|2785701_2786391_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000997368.1|2786506_2787544_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098732.1|2787747_2788167_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000183642.1|2788239_2788920_+|tRNA	tRNA-uridine aminocarboxypropyltransferase	tRNA	NA	NA	NA	NA
>prophage 7
NC_012125	Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594, complete sequence	4833080	4320354	4394911	4833080	tRNA,plate,holin,tail	Burkholderia_phage(39.13%)	66	NA	NA
WP_000186977.1|4320354_4321455_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000591403.1|4321828_4323673_+	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000201804.1|4323617_4324469_+	glutamate racemase	NA	NA	NA	NA	NA
WP_000973248.1|4330351_4330789_-	acetyltransferase	NA	NA	NA	NA	NA
WP_001122767.1|4330945_4331875_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
WP_001069372.1|4332143_4333745_+	malate synthase A	NA	NA	NA	NA	NA
WP_000857884.1|4333776_4335081_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_001137275.1|4335182_4336934_+	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA	NA
WP_077905932.1|4336897_4337305_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_000226434.1|4337315_4338140_-	glyoxylate bypass operon transcriptional repressor IclR	NA	NA	NA	NA	NA
WP_000095981.1|4338449_4342133_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	90.2	1.3e-26
WP_000956811.1|4342399_4344031_+	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000421790.1|4344106_4344796_-	dipeptidase PepE	NA	NA	NA	NA	NA
WP_001541281.1|4344867_4344969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001096724.1|4345003_4345543_+	DUF2058 domain-containing protein	NA	NA	NA	NA	NA
WP_000954609.1|4345589_4346459_+	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA	NA
WP_001207628.1|4346455_4346728_-	DUF3811 domain-containing protein	NA	NA	NA	NA	NA
WP_000881654.1|4346825_4347767_-	ketopantoate/pantoate/pantothenate transporter PanS	NA	NA	NA	NA	NA
WP_000587743.1|4348028_4348757_-	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
WP_000084338.1|4349494_4349950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151757.1|4349946_4350561_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000368206.1|4350567_4352226_-|tail	phage tail protein	tail	A0A0M3ULH6	Salmonella_phage	40.5	1.8e-52
WP_000359503.1|4352228_4352861_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_000951730.1|4352853_4353969_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	3.1e-101
WP_001093501.1|4353959_4354319_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_000632047.1|4354482_4356030_-	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_000703637.1|4356029_4356959_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.4	2.0e-149
WP_000593182.1|4356955_4357318_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000679399.1|4357644_4358367_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_000818153.1|4358376_4359420_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	1.2e-75
WP_001269715.1|4359407_4359617_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	58.8	2.6e-17
WP_000271432.1|4359616_4360570_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	51.5	7.9e-37
WP_001262482.1|4360569_4362924_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	31.2	9.0e-66
WP_001185655.1|4363020_4363149_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003641.1|4363108_4363426_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4363477_4364002_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729853.1|4364001_4365429_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.4e-194
WP_000875314.1|4365418_4365616_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449439.1|4365612_4366068_-	Gp37 family protein	NA	NA	NA	NA	NA
WP_000777267.1|4366226_4366541_-	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	48.2	8.3e-20
WP_001270437.1|4366553_4367159_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	60.4	8.4e-61
WP_001226439.1|4367161_4367449_-|holin	putative holin	holin	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000615249.1|4368023_4368371_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	1.7e-21
WP_000136395.1|4368423_4369773_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000790028.1|4370117_4371767_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_001541297.1|4372210_4372453_+	outer membrane protein	NA	NA	NA	NA	NA
WP_001541298.1|4372486_4373155_+	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_000977962.1|4373151_4373889_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_000750792.1|4373888_4375985_+	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000982749.1|4376127_4376538_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_001252086.1|4376703_4377594_-	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000382570.1|4377608_4379153_-	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_000695415.1|4379284_4380475_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000179176.1|4380836_4381946_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000973642.1|4382034_4383393_+	maltoporin	NA	NA	NA	NA	NA
WP_000782497.1|4383556_4384474_+	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000019230.1|4384654_4385152_+	chorismate lyase	NA	NA	NA	NA	NA
WP_000455248.1|4385165_4386038_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000017360.1|4386136_4388557_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000002900.1|4388727_4389096_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000646079.1|4389204_4389813_+	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_010989093.1|4391308_4391422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001030592.1|4391443_4391653_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000416267.1|4391752_4392268_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001039346.1|4392514_4393825_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_001182218.1|4393912_4394911_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
>prophage 1
NC_012124	Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 plasmid pSPCV, complete sequence	55414	39961	46865	55414	transposase	Escherichia_phage(33.33%)	8	NA	NA
WP_000925627.1|39961_40384_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
WP_000457543.1|40383_41658_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.0	4.3e-155
WP_000064275.1|41739_42714_-	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	52.9	1.1e-83
WP_000427676.1|42713_43919_-	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000728917.1|44333_45275_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
WP_001541562.1|45306_45873_-	DUF2913 family protein	NA	NA	NA	NA	NA
WP_001527010.1|45929_46265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041030921.1|46448_46865_-	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
