assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000017765.1_ASM1776v1	NC_009800	Escherichia coli HS, complete sequence	1	985984-986188	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|551aa|up_9|NC_009800.1_972396_974049_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NC_009800.1_974192_975092_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NC_009800.1_975586_976282_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NC_009800.1_976706_978365_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NC_009800.1_978361_979318_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NC_009800.1_979468_980584_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NC_009800.1_980580_982527_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NC_009800.1_982599_982824_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NC_009800.1_983146_983467_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NC_009800.1_983497_985774_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NC_009800.1_986572_986791_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NC_009800.1_987075_987780_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NC_009800.1_987821_989543_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NC_009800.1_989543_991310_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NC_009800.1_991432_992398_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NC_009800.1_992942_993437_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1330aa|down_6|NC_009800.1_993571_997561_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NC_009800.1_997715_998327_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NC_009800.1_998337_999681_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NC_009800.1_999771_1001064_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000017765.1_ASM1776v1	NC_009800	Escherichia coli HS, complete sequence	2	2388183-2388309	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|395aa|up_9|NC_009800.1_2367090_2368275_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NC_009800.1_2368348_2369125_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NC_009800.1_2369129_2370779_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|NC_009800.1_2370779_2375294_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NC_009800.1_2375317_2375941_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NC_009800.1_2375937_2377626_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NC_009800.1_2377774_2380402_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NC_009800.1_2380548_2381271_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NC_009800.1_2381398_2385151_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NC_009800.1_2385846_2388132_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NC_009800.1_2388365_2389496_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NC_009800.1_2389495_2389750_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NC_009800.1_2389803_2390454_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NC_009800.1_2390916_2391993_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NC_009800.1_2391997_2393356_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NC_009800.1_2393628_2395257_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NC_009800.1_2395246_2396506_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NC_009800.1_2396502_2397693_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|301aa|down_8|NC_009800.1_2397885_2398788_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NC_009800.1_2398828_2399632_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_000017765.1_ASM1776v1	NC_009800	Escherichia coli HS, complete sequence	3	2699991-2700112	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GGTTCTGTACACTGTAGGCCTGATAAGACGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|259aa|up_9|NC_009800.1_2691795_2692572_-	PRK11611, PRK11611, enhanced serine sensitivity protein SseB; Provisional	NA|428aa|up_8|NC_009800.1_2692713_2693997_-	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|67aa|up_7|NC_009800.1_2694054_2694255_-	PRK10721, PRK10721, hypothetical protein; Provisional	NA|112aa|up_6|NC_009800.1_2694266_2694602_-	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system	NA|617aa|up_5|NC_009800.1_2694603_2696454_-	PRK05183, hscA, chaperone protein HscA; Provisional	NA|172aa|up_4|NC_009800.1_2696470_2696986_-	PRK05014, hscB, co-chaperone HscB; Provisional	NA|108aa|up_3|NC_009800.1_2697081_2697405_-	PRK09502, iscA, iron-sulfur cluster assembly protein IscA	NA|129aa|up_2|NC_009800.1_2697421_2697808_-	PRK11325, PRK11325, scaffold protein; Provisional	NA|405aa|up_1|NC_009800.1_2697835_2699050_-	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|163aa|up_0|NC_009800.1_2699290_2699779_-	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR	NA|247aa|down_0|NC_009800.1_2700139_2700880_-	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional	NA|268aa|down_1|NC_009800.1_2700998_2701802_+	PRK10757, PRK10757, inositol-1-monophosphatase	NA|285aa|down_2|NC_009800.1_2701946_2702801_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|427aa|down_3|NC_009800.1_2702991_2704272_+	PRK11564, PRK11564, stationary phase inducible protein CsiE; Provisional	NA|380aa|down_4|NC_009800.1_2704263_2705403_-	PRK11128, PRK11128, 3-phenylpropionate MFS transporter	NA|297aa|down_5|NC_009800.1_2705562_2706453_-	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|454aa|down_6|NC_009800.1_2706588_2707950_+	cd08881, RHO_alpha_C_NDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases	NA|173aa|down_7|NC_009800.1_2707946_2708465_+	PRK10069, PRK10069, 3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA|107aa|down_8|NC_009800.1_2708464_2708785_+	PRK09965, PRK09965, 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional	NA|271aa|down_9|NC_009800.1_2708781_2709594_+	cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs
GCF_000017765.1_ASM1776v1	NC_009800	Escherichia coli HS, complete sequence	4	2825616-2825760	4	CRISPRCasFinder	no	csa3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-A	CACAATGCCTGATGCGACGCTGGAGCGTCTTATCATGCCTACAAA	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|150aa|up_9|NC_009800.1_2816606_2817056_+	pfam06610, AlaE, L-alanine exporter	NA|115aa|up_8|NC_009800.1_2817092_2817437_-	PRK10556, PRK10556, hypothetical protein; Provisional	NA|110aa|up_7|NC_009800.1_2817588_2817918_+	PRK10132, PRK10132, hypothetical protein; Provisional	NA|82aa|up_6|NC_009800.1_2818165_2818411_+	PRK10329, PRK10329, glutaredoxin-like protein NrdH	NA|137aa|up_5|NC_009800.1_2818407_2818818_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|715aa|up_4|NC_009800.1_2818790_2820935_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|320aa|up_3|NC_009800.1_2820944_2821904_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|401aa|up_2|NC_009800.1_2822257_2823460_+	PRK10070, PRK10070, proline/glycine betaine ABC transporter ATP-binding protein ProV	NA|355aa|up_1|NC_009800.1_2823452_2824517_+	PRK10952, PRK10952, proline/glycine betaine ABC transporter permease ProW	NA|331aa|up_0|NC_009800.1_2824574_2825567_+	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX	NA|395aa|down_0|NC_009800.1_2825858_2827043_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|246aa|down_1|NC_009800.1_2827166_2827904_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|112aa|down_2|NC_009800.1_2827893_2828229_+	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|177aa|down_3|NC_009800.1_2828319_2828850_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|391aa|down_4|NC_009800.1_2828976_2830149_+	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|513aa|down_5|NC_009800.1_2830165_2831704_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|172aa|down_6|NC_009800.1_2831767_2832283_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|519aa|down_7|NC_009800.1_2832432_2833989_-	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|143aa|down_8|NC_009800.1_2834061_2834490_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|189aa|down_9|NC_009800.1_2834486_2835053_-	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase
GCF_000017765.1_ASM1776v1	NC_009800	Escherichia coli HS, complete sequence	5	2895058-2895696	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,9,8	10	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NC_009800.1_2886931_2887693_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_009800.1_2887673_2888723_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_009800.1_2888719_2889199_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_009800.1_2889198_2889909_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_009800.1_2889927_2890239_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_009800.1_2890432_2890756_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_009800.1_2890805_2891411_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_009800.1_2891410_2892838_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_009800.1_2892839_2893748_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_009800.1_2893999_2895037_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NC_009800.1_2895801_2896086_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NC_009800.1_2896087_2897005_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NC_009800.1_2897020_2897620_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NC_009800.1_2897606_2898281_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NC_009800.1_2898283_2899375_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NC_009800.1_2899387_2899870_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NC_009800.1_2899862_2901371_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NC_009800.1_2901785_2904452_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NC_009800.1_2904810_2905545_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NC_009800.1_2905618_2907331_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000017765.1_ASM1776v1	NC_009800	Escherichia coli HS, complete sequence	6	2920652-2921839	6,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCAGGCGCGGGGAACTC,CGGTTTATCCCCGCAGGCGCGGGGAACTC,CGGTTTATCCCCGCAGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,18	19	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NC_009800.1_2922988_2923129_+	NA|424aa|up_9|NC_009800.1_2909888_2911160_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_009800.1_2911150_2911411_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_009800.1_2911427_2912003_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NC_009800.1_2912150_2913011_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_009800.1_2913007_2913787_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NC_009800.1_2913764_2915174_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_009800.1_2915195_2916650_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_009800.1_2916719_2917505_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_009800.1_2917823_2919101_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_009800.1_2919127_2920606_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_009800.1_2922178_2922850_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NC_009800.1_2922988_2923129_+	NA	NA|243aa|down_2|NC_009800.1_2923142_2923871_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NC_009800.1_2924851_2926150_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NC_009800.1_2926237_2927875_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NC_009800.1_2928102_2928894_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NC_009800.1_2928964_2929300_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NC_009800.1_2929299_2929548_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NC_009800.1_2929625_2931860_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NC_009800.1_2931907_2933209_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
