assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000017705.1_ASM1770v1	NC_009783	Vibrio campbellii ATCC BAA-1116 chromosome I, complete sequence	1	1693071-1693188	1	PILER-CR	no	WYL	DEDDh,RT,csa3,cas3,DinG,PrimPol,csx1,WYL	Unclear	GAGGATGCAATAAGCC	16	0	0	NA	NA	NA	2	2	Orphan	DEDDh,RT,csa3,cas3,DinG,PrimPol,csx1,WYL,cas5f,cas7f,cas6f	NA|374aa|up_7|NC_009783.1_1679765_1680887_+,NA|191aa|up_1|NC_009783.1_1691258_1691831_+,NA|128aa|up_0|NC_009783.1_1691978_1692362_+,NA|113aa|down_1|NC_009783.1_1694437_1694776_+,NA|260aa|down_4|NC_009783.1_1697444_1698224_+,NA|471aa|down_6|NC_009783.1_1701159_1702572_+,NA|189aa|down_7|NC_009783.1_1702568_1703135_+,NA|100aa|down_8|NC_009783.1_1703279_1703579_-	NA|374aa|up_9|NC_009783.1_1676474_1677596_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|307aa|up_8|NC_009783.1_1678526_1679447_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|374aa|up_7|NC_009783.1_1679765_1680887_+	NA	NA|1625aa|up_6|NC_009783.1_1681171_1686046_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|163aa|up_5|NC_009783.1_1686042_1686531_+	pfam13958, ToxN_toxin, Toxin ToxN, type III toxin-antitoxin system	NA|393aa|up_4|NC_009783.1_1686675_1687853_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|398aa|up_3|NC_009783.1_1688226_1689420_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|398aa|up_2|NC_009783.1_1689566_1690760_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|191aa|up_1|NC_009783.1_1691258_1691831_+	NA	NA|128aa|up_0|NC_009783.1_1691978_1692362_+	NA	NA|338aa|down_0|NC_009783.1_1693421_1694435_+	pfam12835, Integrase_1, Integrase	NA|113aa|down_1|NC_009783.1_1694437_1694776_+	NA	NA|441aa|down_2|NC_009783.1_1694931_1696254_-	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	WYL|285aa|down_3|NC_009783.1_1696387_1697242_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|260aa|down_4|NC_009783.1_1697444_1698224_+	NA	NA|980aa|down_5|NC_009783.1_1698227_1701167_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|471aa|down_6|NC_009783.1_1701159_1702572_+	NA	NA|189aa|down_7|NC_009783.1_1702568_1703135_+	NA	NA|100aa|down_8|NC_009783.1_1703279_1703579_-	NA	NA|149aa|down_9|NC_009783.1_1703586_1704033_-	cd17018, T3SC_IA_ExsC-like, Class IA type III secretion system chaperone protein, similar to Pseudomonas aeruginosa exoenzyme S synthesis protein C (ExsC)
GCF_000017705.1_ASM1770v1	NC_009783	Vibrio campbellii ATCC BAA-1116 chromosome I, complete sequence	2	3640883-3641124	2	PILER-CR	no		DEDDh,RT,csa3,cas3,DinG,PrimPol,csx1,WYL	Orphan	CCTCCTTAGCTCAGTAGGTAGAGCAACGGACTGATAATCCGC	42	0	0	NA	NA	NA	2	2	Orphan	DEDDh,RT,csa3,cas3,DinG,PrimPol,csx1,WYL,cas5f,cas7f,cas6f	NA,NA|297aa|down_9|NC_009783.1_3660527_3661418_-	NA|144aa|up_9|NC_009783.1_3629332_3629764_+	pfam14467, DUF4426, Domain of unknown function (DUF4426)	NA|201aa|up_8|NC_009783.1_3629869_3630472_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|391aa|up_7|NC_009783.1_3630490_3631663_+	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|460aa|up_6|NC_009783.1_3632442_3633822_-	pfam14706, Tnp_DNA_bind, Transposase DNA-binding	NA|307aa|up_5|NC_009783.1_3634723_3635644_-	PRK00971, PRK00971, glutaminase; Provisional	NA|343aa|up_4|NC_009783.1_3635746_3636775_-	COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair]	NA|240aa|up_3|NC_009783.1_3636786_3637506_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|359aa|up_2|NC_009783.1_3637709_3638786_+	PRK10880, PRK10880, adenine DNA glycosylase	NA|91aa|up_1|NC_009783.1_3638805_3639078_+	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|377aa|up_0|NC_009783.1_3639164_3640295_+	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC	NA|479aa|down_0|NC_009783.1_3643971_3645408_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|417aa|down_1|NC_009783.1_3652240_3653491_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|333aa|down_2|NC_009783.1_3653630_3654629_-	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism	NA|252aa|down_3|NC_009783.1_3654732_3655488_-	PRK02134, PRK02134, chitin disaccharide deacetylase	NA|441aa|down_4|NC_009783.1_3655505_3656828_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|104aa|down_5|NC_009783.1_3656838_3657150_-	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|445aa|down_6|NC_009783.1_3657198_3658533_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|102aa|down_7|NC_009783.1_3658620_3658926_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|428aa|down_8|NC_009783.1_3659174_3660458_+	cd10946, CE4_Mll8295_like, Putative catalytic NodB homology domain of uncharacterized Mll8295 protein encoded from Rhizobium loti and its bacterial homologs	NA|297aa|down_9|NC_009783.1_3660527_3661418_-	NA
GCF_000017705.1_ASM1770v1	NC_009784	Vibrio campbellii ATCC BAA-1116 chromosome II, complete sequence	1	1398167-1398375	1,1	CRT,CRISPRCasFinder	no	cas5f,cas7f,cas6f	RT,csa3,cas3,cas5f,cas7f,cas6f	Unclear	AGTAAACTGCCGAGTAGGTAGCTGATAAT,GTAAACTGCCGAGTAGGTAGCTGATAAT	29,28	0	0	NA	NA	NA:NA	3,3	3	Unclear	DEDDh,RT,csa3,cas3,DinG,PrimPol,csx1,WYL,cas5f,cas7f,cas6f	NA,NA|183aa|down_1|NC_009784.1_1398831_1399380_+	NA|398aa|up_9|NC_009784.1_1379668_1380862_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|164aa|up_8|NC_009784.1_1380957_1381449_-	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD	NA|670aa|up_7|NC_009784.1_1381454_1383464_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|398aa|up_6|NC_009784.1_1385415_1386609_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|361aa|up_5|NC_009784.1_1387254_1388337_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|1586aa|up_4|NC_009784.1_1388336_1393094_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|395aa|up_3|NC_009784.1_1393299_1394484_+	pfam06527, TniQ, TniQ	cas5f|641aa|up_2|NC_009784.1_1394484_1396407_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|353aa|up_1|NC_009784.1_1396378_1397437_+	TIGR02566, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy3	cas6f|200aa|up_0|NC_009784.1_1397439_1398039_+	cd09674, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|69aa|down_0|NC_009784.1_1398533_1398740_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|183aa|down_1|NC_009784.1_1398831_1399380_+	NA	NA|465aa|down_2|NC_009784.1_1399373_1400768_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|327aa|down_3|NC_009784.1_1400858_1401839_-	pfam05621, TniB, Bacterial TniB protein	NA|334aa|down_4|NC_009784.1_1401860_1402862_-	pfam00665, rve, Integrase core domain	NA|398aa|down_5|NC_009784.1_1402961_1404155_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|207aa|down_6|NC_009784.1_1405077_1405698_-	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal	NA|348aa|down_7|NC_009784.1_1405842_1406886_-	PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|513aa|down_8|NC_009784.1_1407333_1408872_-	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|147aa|down_9|NC_009784.1_1408982_1409423_-	pfam00989, PAS, PAS fold
GCF_000017705.1_ASM1770v1	NC_009784	Vibrio campbellii ATCC BAA-1116 chromosome II, complete sequence	2	1605624-1605706	2	CRISPRCasFinder	no	RT	RT,csa3,cas3,cas5f,cas7f,cas6f	Unclear	GCTGACCGTTAACGTGTCGTCACCTT	26	1	1	1605650-1605680	NC_009784.1_1604999-1605029	NA	1	1	Orphan	DEDDh,RT,csa3,cas3,DinG,PrimPol,csx1,WYL,cas5f,cas7f,cas6f	NA|104aa|up_3|NC_009784.1_1597446_1597758_-,NA|237aa|up_0|NC_009784.1_1603519_1604230_-,NA|152aa|down_0|NC_009784.1_1608472_1608928_-,NA|66aa|down_5|NC_009784.1_1618124_1618322_-	NA|176aa|up_9|NC_009784.1_1591083_1591611_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|136aa|up_8|NC_009784.1_1591850_1592258_+	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|215aa|up_7|NC_009784.1_1592322_1592967_+	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p)	NA|402aa|up_6|NC_009784.1_1593223_1594429_+	pfam11301, DUF3103, Protein of unknown function (DUF3103)	NA|511aa|up_5|NC_009784.1_1595504_1597037_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|118aa|up_4|NC_009784.1_1597096_1597450_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|104aa|up_3|NC_009784.1_1597446_1597758_-	NA	NA|870aa|up_2|NC_009784.1_1598098_1600708_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|953aa|up_1|NC_009784.1_1600647_1603506_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|up_0|NC_009784.1_1603519_1604230_-	NA	NA|152aa|down_0|NC_009784.1_1608472_1608928_-	NA	NA|458aa|down_1|NC_009784.1_1611001_1612375_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|684aa|down_2|NC_009784.1_1612359_1614411_-	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	RT|189aa|down_3|NC_009784.1_1615396_1615963_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|398aa|down_4|NC_009784.1_1616075_1617269_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|66aa|down_5|NC_009784.1_1618124_1618322_-	NA	NA|240aa|down_6|NC_009784.1_1618392_1619112_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|495aa|down_7|NC_009784.1_1619550_1621035_+	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|449aa|down_8|NC_009784.1_1621040_1622387_+	pfam07394, DUF1501, Protein of unknown function (DUF1501)	NA|265aa|down_9|NC_009784.1_1622511_1623306_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
GCF_000017705.1_ASM1770v1	NC_009777	Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence	1	28648-28722	1	CRISPRCasFinder	no	csa3	csa3,RT	Type I-A	TGTGGTACTTCTTGTGGTGACTCT	24	1	2	28672-28698|28672-28698	NC_009783.1_1502001-1502027|NC_009783.1_2599365-2599339	NA	1	1	Orphan	DEDDh,RT,csa3,cas3,DinG,PrimPol,csx1,WYL,cas5f,cas7f,cas6f	NA|144aa|up_9|NC_009777.1_19388_19820_+,NA|400aa|up_3|NC_009777.1_24022_25222_-,NA|66aa|up_0|NC_009777.1_27835_28033_-,NA|179aa|down_1|NC_009777.1_31892_32429_-	NA|144aa|up_9|NC_009777.1_19388_19820_+	NA	NA|42aa|up_8|NC_009777.1_19801_19927_+	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|95aa|up_7|NC_009777.1_20692_20977_+	PRK06771, PRK06771, hypothetical protein; Provisional	NA|348aa|up_6|NC_009777.1_21435_22479_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|44aa|up_5|NC_009777.1_22559_22691_+	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|339aa|up_4|NC_009777.1_22895_23912_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|400aa|up_3|NC_009777.1_24022_25222_-	NA	NA|275aa|up_2|NC_009777.1_26002_26827_+	pfam11185, DUF2971, Protein of unknown function (DUF2971)	csa3|99aa|up_1|NC_009777.1_27552_27849_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|66aa|up_0|NC_009777.1_27835_28033_-	NA	NA|735aa|down_0|NC_009777.1_29679_31884_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|179aa|down_1|NC_009777.1_31892_32429_-	NA	NA|580aa|down_2|NC_009777.1_32439_34179_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|339aa|down_3|NC_009777.1_34221_35238_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|398aa|down_4|NC_009777.1_35588_36782_-	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS)	NA|256aa|down_5|NC_009777.1_36774_37542_-	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9	NA|252aa|down_6|NC_009777.1_37538_38294_-	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|317aa|down_7|NC_009777.1_38517_39468_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|78aa|down_8|NC_009777.1_39477_39711_-	cd16341, FdhE, formate dehydrogenase accessory protein FdhE and similar proteins	NA|222aa|down_9|NC_009777.1_39723_40389_-	pfam07996, T4SS, Type IV secretion system proteins
GCF_000017705.1_ASM1770v1	NC_009777	Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence	2	52769-52868	2	CRISPRCasFinder	no	RT	csa3,RT	Unclear	TTTTCAATTGTGCAATTTAGTTA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,csa3,cas3,DinG,PrimPol,csx1,WYL,cas5f,cas7f,cas6f	NA|142aa|up_8|NC_009777.1_45948_46374_-,NA|160aa|up_6|NC_009777.1_47030_47510_-,NA|267aa|up_5|NC_009777.1_48213_49014_+,NA|99aa|up_2|NC_009777.1_51012_51309_+,NA|113aa|up_1|NC_009777.1_51661_52000_-,NA|82aa|up_0|NC_009777.1_52010_52256_-,NA|151aa|down_0|NC_009777.1_53128_53581_-,NA|104aa|down_5|NC_009777.1_57403_57715_-,NA|255aa|down_7|NC_009777.1_59172_59937_+,NA|74aa|down_8|NC_009777.1_60456_60678_-,NA|401aa|down_9|NC_009777.1_60685_61888_-	NA|197aa|up_9|NC_009777.1_45336_45927_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|142aa|up_8|NC_009777.1_45948_46374_-	NA	NA|216aa|up_7|NC_009777.1_46386_47034_-	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB	NA|160aa|up_6|NC_009777.1_47030_47510_-	NA	NA|267aa|up_5|NC_009777.1_48213_49014_+	NA	NA|133aa|up_4|NC_009777.1_49713_50112_+	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1	NA|256aa|up_3|NC_009777.1_50224_50992_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|99aa|up_2|NC_009777.1_51012_51309_+	NA	NA|113aa|up_1|NC_009777.1_51661_52000_-	NA	NA|82aa|up_0|NC_009777.1_52010_52256_-	NA	NA|151aa|down_0|NC_009777.1_53128_53581_-	NA	NA|329aa|down_1|NC_009777.1_53777_54764_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|132aa|down_2|NC_009777.1_54851_55247_+	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|515aa|down_3|NC_009777.1_55449_56994_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|118aa|down_4|NC_009777.1_57053_57407_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|104aa|down_5|NC_009777.1_57403_57715_-	NA	NA|158aa|down_6|NC_009777.1_57955_58429_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|255aa|down_7|NC_009777.1_59172_59937_+	NA	NA|74aa|down_8|NC_009777.1_60456_60678_-	NA	NA|401aa|down_9|NC_009777.1_60685_61888_-	NA
