The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011144	Phenylobacterium zucineum HLK1, complete sequence	3996255	1831087	1838789	3996255		Synechococcus_phage(33.33%)	7	NA	NA
WP_012522178.1|1831087_1832089_-	ADP-glyceromanno-heptose 6-epimerase	NA	A0A1D8KKD9	Synechococcus_phage	30.3	3.8e-26
WP_012522179.1|1832085_1833555_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	E3SJ88	Synechococcus_phage	44.4	1.0e-19
WP_012522180.1|1833589_1834447_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.7	8.9e-48
WP_012522181.1|1834620_1835832_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	29.8	2.5e-35
WP_012522182.1|1835878_1836880_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	37.1	1.8e-44
WP_012522183.1|1836885_1837725_+	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA	NA
WP_049758404.1|1837721_1838789_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.6	4.9e-72
>prophage 2
NC_011144	Phenylobacterium zucineum HLK1, complete sequence	3996255	2187057	2199555	3996255	tRNA	uncultured_Mediterranean_phage(90.0%)	14	NA	NA
WP_012522506.1|2187057_2188020_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	45.2	1.0e-52
WP_012522507.1|2188034_2189639_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_012522508.1|2189657_2190008_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	51.8	4.2e-12
WP_012522509.1|2190125_2190965_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012522510.1|2190971_2192378_-	peptidoglycan DD-metalloendopeptidase family protein	NA	M1HNA7	Bacillus_virus	43.4	2.1e-06
WP_012522511.1|2192489_2193161_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.7	3.7e-33
WP_012522512.1|2193163_2193937_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	39.7	3.4e-38
WP_012522513.1|2193933_2195214_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.3	2.5e-94
WP_012522514.1|2195293_2196193_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	37.9	3.6e-39
WP_012522515.1|2196189_2196726_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_012522516.1|2196799_2197012_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
WP_012522517.1|2197100_2197751_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.9	6.3e-38
WP_012522518.1|2197747_2198557_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	30.2	3.2e-23
WP_012522519.1|2198553_2199555_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	45.6	6.8e-23
>prophage 1
NC_011143	Phenylobacterium zucineum HLK1 plasmid unnamed, complete sequence	382976	324415	374836	382976	transposase	Shigella_phage(22.22%)	53	NA	NA
WP_012520261.1|324415_325951_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	3.8e-126
WP_049758529.1|326011_326407_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_041374521.1|326416_326824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012520517.1|327058_328399_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_083771057.1|328829_329177_+	DUF1857 family protein	NA	NA	NA	NA	NA
WP_012520520.1|329333_331253_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	26.0	3.8e-06
WP_041374522.1|331435_331639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049758531.1|331740_332469_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_041374523.1|332609_332822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148217053.1|333010_333313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086004007.1|334212_335384_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	43.6	1.3e-57
WP_012520523.1|335654_336278_+	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_012520524.1|336331_337120_+	exodeoxyribonuclease III	NA	A0A0N9QXX6	Chrysochromulina_ericina_virus	25.1	4.4e-17
WP_049758533.1|337132_337492_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012520526.1|337644_338595_+	RNA polymerase sigma factor RpoH	NA	M4SMP8	Cyanophage	26.7	1.1e-11
WP_012520527.1|338672_339569_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_049758534.1|339791_340907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041374525.1|340957_341743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041374526.1|341862_342171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012520530.1|342312_342765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012520531.1|342817_343843_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_187149128.1|343939_344305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012520532.1|344590_344947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012520534.1|346282_346936_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_012520535.1|347037_348594_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_041374528.1|348719_348983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012520536.1|349044_349440_-	response regulator	NA	NA	NA	NA	NA
WP_012520537.1|349956_350982_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_012520538.1|351276_351987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012520539.1|351983_352580_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_041374529.1|352576_352855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012520541.1|352906_353341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012520542.1|353344_353602_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_012520543.1|353690_354095_-	single-stranded DNA-binding protein	NA	A0A1X9SGJ7	Bradyrhizobium_phage	50.0	1.6e-23
WP_012520544.1|354647_355070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012520545.1|355172_355643_+	putative interphotoreceptor retinol- binding protein	NA	NA	NA	NA	NA
WP_041374530.1|356301_357051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012520547.1|357254_358661_-	amidase	NA	NA	NA	NA	NA
WP_049758537.1|359013_360519_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012520549.1|360555_361467_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_041374531.1|361566_362208_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012520551.1|362306_363146_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_012520552.1|363155_363986_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_041374533.1|364413_364722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041374534.1|365924_366158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012520555.1|366491_367220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_187149129.1|367219_367660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086004007.1|367740_368911_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	43.6	1.3e-57
WP_049758539.1|368937_369903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086004002.1|369996_371162_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	46.4	7.6e-50
WP_041374535.1|371221_371467_-	ArdC family protein	NA	NA	NA	NA	NA
WP_012520556.1|371712_373842_-	strawberry notch C-terminal domain-containing protein	NA	V5LQJ6	Emiliania_huxleyi_virus	30.3	7.2e-06
WP_012520421.1|373807_374836_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
