assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	1	463544-463645	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NC_009632.1_455103_455313_-,NA|128aa|up_6|NC_009632.1_456137_456521_-,NA|33aa|up_0|NC_009632.1_462768_462867_+,NA|221aa|down_1|NC_009632.1_464735_465398_-,NA|179aa|down_7|NC_009632.1_471489_472026_-	NA|84aa|up_9|NC_009632.1_454813_455065_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NC_009632.1_455103_455313_-	NA	NA|194aa|up_7|NC_009632.1_455490_456072_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NC_009632.1_456137_456521_-	NA	NA|209aa|up_5|NC_009632.1_456790_457417_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NC_009632.1_457860_459384_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_009632.1_459399_459969_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_009632.1_460460_461216_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_009632.1_461295_462684_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NC_009632.1_462768_462867_+	NA	NA|319aa|down_0|NC_009632.1_463661_464618_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_009632.1_464735_465398_-	NA	NA|136aa|down_2|NC_009632.1_465540_465948_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_009632.1_466460_467039_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_009632.1_467038_468307_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_009632.1_468344_469811_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_009632.1_469835_471377_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_009632.1_471489_472026_-	NA	NA|235aa|down_8|NC_009632.1_472417_473122_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_009632.1_473520_473793_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	2	819086-819168	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_009632.1_805699_805906_+,NA|34aa|down_1|NC_009632.1_820823_820925_+,NA|52aa|down_8|NC_009632.1_828771_828927_+	NA|69aa|up_9|NC_009632.1_805699_805906_+	NA	NA|237aa|up_8|NC_009632.1_805993_806704_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_009632.1_806687_807692_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_009632.1_808165_810106_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_009632.1_810375_812259_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_009632.1_812270_814052_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_009632.1_814273_815251_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_009632.1_815243_816758_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_009632.1_816997_818056_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_009632.1_818394_818937_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_009632.1_819815_820733_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_009632.1_820823_820925_+	NA	NA|502aa|down_2|NC_009632.1_821002_822508_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_009632.1_822848_823349_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_009632.1_823368_824235_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_009632.1_825035_825434_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_009632.1_825396_827502_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_009632.1_827619_828591_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_009632.1_828771_828927_+	NA	NA|324aa|down_9|NC_009632.1_828965_829937_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	3	860033-860111	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	860057-860087	NC_009632.1_1777721-1777751	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_009632.1_850909_851014_+,NA|36aa|up_5|NC_009632.1_852446_852554_+,NA	NA|191aa|up_9|NC_009632.1_847350_847923_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_009632.1_848336_850868_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_009632.1_850909_851014_+	NA	NA|370aa|up_6|NC_009632.1_851182_852293_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_009632.1_852446_852554_+	NA	NA|280aa|up_4|NC_009632.1_852701_853541_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_009632.1_853714_854365_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_009632.1_854361_854598_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_009632.1_854866_856852_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_009632.1_856859_859706_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_009632.1_860369_861302_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_009632.1_861307_862147_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_009632.1_862154_862640_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_009632.1_862647_864087_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_009632.1_864153_865089_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_009632.1_865974_866886_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_009632.1_866882_867878_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_009632.1_867988_868933_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_009632.1_869496_870084_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_009632.1_870326_871229_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	4	865488-865757	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	40	865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865524-865545|865582-865604|865582-865604|865582-865604|865582-865604|865582-865604|865582-865604|865582-865604|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865641-865662|865699-865721|865699-865721|865699-865721|865699-865721|865699-865721|865699-865721|865699-865721	NC_009632.1_182347-182326|NC_009632.1_305423-305402|NC_009632.1_692043-692022|NC_009632.1_818127-818148|NC_009632.1_908788-908809|NC_009632.1_1473203-1473182|NC_009632.1_1561736-1561757|NC_009632.1_1743314-1743335|NC_009632.1_1757869-1757848|NC_009632.1_2075599-2075620|NC_009632.1_1023108-1023129|NC_009632.1_1777576-1777597|NC_009632.1_1777809-1777830|NC_009632.1_819099-819077|NC_009632.1_819377-819355|NC_009632.1_1473320-1473298|NC_009632.1_2075657-2075679|NC_009632.1_2415270-2415292|NC_009632.1_1561619-1561641|NC_009632.1_2176562-2176584|NC_009632.1_182347-182326|NC_009632.1_305423-305402|NC_009632.1_692043-692022|NC_009632.1_818127-818148|NC_009632.1_908788-908809|NC_009632.1_1473203-1473182|NC_009632.1_1561736-1561757|NC_009632.1_1743314-1743335|NC_009632.1_1757869-1757848|NC_009632.1_2075599-2075620|NC_009632.1_1023108-1023129|NC_009632.1_1777576-1777597|NC_009632.1_1777809-1777830|NC_009632.1_819099-819077|NC_009632.1_819377-819355|NC_009632.1_1473320-1473298|NC_009632.1_2075657-2075679|NC_009632.1_2415270-2415292|NC_009632.1_1561619-1561641|NC_009632.1_2176562-2176584	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NC_009632.1_852701_853541_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NC_009632.1_853714_854365_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NC_009632.1_854361_854598_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NC_009632.1_854866_856852_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NC_009632.1_856859_859706_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NC_009632.1_860369_861302_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NC_009632.1_861307_862147_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NC_009632.1_862154_862640_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NC_009632.1_862647_864087_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NC_009632.1_864153_865089_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NC_009632.1_865974_866886_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NC_009632.1_866882_867878_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NC_009632.1_867988_868933_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NC_009632.1_869496_870084_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NC_009632.1_870326_871229_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NC_009632.1_871931_872561_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NC_009632.1_873317_874331_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NC_009632.1_874383_875394_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NC_009632.1_875532_876723_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NC_009632.1_876844_877606_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	5	908715-908796	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	908739-908772	NC_009632.1_1473311-1473278	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NC_009632.1_901817_902399_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_009632.1_902471_903089_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_009632.1_903243_903738_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_009632.1_904136_904559_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_009632.1_904706_905423_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_009632.1_905505_906045_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_009632.1_906195_906516_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_009632.1_906659_907016_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_009632.1_907173_907554_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_009632.1_907732_908611_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_009632.1_909407_909794_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_009632.1_909786_910083_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_009632.1_910332_911358_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_009632.1_911350_912046_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_009632.1_912063_912885_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_009632.1_913238_913433_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_009632.1_913666_914518_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_009632.1_914845_915607_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_009632.1_915704_917012_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_009632.1_917117_918368_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	6	1743238-1743322	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1743264-1743296	NC_009632.1_1473311-1473279	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_009632.1_1732447_1733131_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_009632.1_1733374_1733551_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_009632.1_1733843_1735190_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_009632.1_1735196_1735949_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_009632.1_1735950_1736889_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_009632.1_1736892_1738032_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_009632.1_1738167_1740000_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_009632.1_1740068_1740695_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_009632.1_1740726_1741704_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_009632.1_1741804_1742929_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_009632.1_1743494_1745318_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_009632.1_1745663_1745915_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_009632.1_1745959_1746934_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_009632.1_1746990_1749192_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_009632.1_1749196_1749658_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_009632.1_1749749_1750436_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_009632.1_1750475_1751192_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_009632.1_1751194_1751548_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_009632.1_1751548_1752133_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_009632.1_1752122_1752692_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	7	2176481-2176562	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2176505-2176538|2176505-2176538|2176505-2176538|2176505-2176538|2176505-2176538	NC_009632.1_860032-860065|NC_009632.1_1261569-1261536|NC_009632.1_1869982-1869949|NC_009632.1_1477652-1477685|NC_009632.1_2865920-2865953	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|49aa|up_7|NC_009632.1_2168787_2168934_+,NA|61aa|up_5|NC_009632.1_2169186_2169369_+,NA	NA|239aa|up_9|NC_009632.1_2167131_2167848_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|285aa|up_8|NC_009632.1_2167859_2168714_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|49aa|up_7|NC_009632.1_2168787_2168934_+	NA	NA|62aa|up_6|NC_009632.1_2168930_2169116_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|61aa|up_5|NC_009632.1_2169186_2169369_+	NA	NA|238aa|up_4|NC_009632.1_2169447_2170161_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_3|NC_009632.1_2170351_2171389_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NC_009632.1_2172507_2173524_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NC_009632.1_2173545_2174601_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NC_009632.1_2175036_2176260_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NC_009632.1_2176703_2178011_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NC_009632.1_2178550_2180167_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NC_009632.1_2180242_2180527_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NC_009632.1_2180701_2181445_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NC_009632.1_2181469_2182729_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NC_009632.1_2182925_2183552_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NC_009632.1_2183912_2184698_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NC_009632.1_2185297_2185432_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NC_009632.1_2185667_2186231_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NC_009632.1_2186233_2186377_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	8	2305738-2305818	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NC_009632.1_2300612_2300843_-,NA|364aa|up_0|NC_009632.1_2304629_2305721_+,NA|35aa|down_0|NC_009632.1_2306153_2306258_-,NA|53aa|down_2|NC_009632.1_2306937_2307096_+	NA|237aa|up_9|NC_009632.1_2296223_2296934_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_009632.1_2297054_2297498_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_009632.1_2297697_2298111_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_009632.1_2298567_2299941_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_009632.1_2300612_2300843_-	NA	NA|313aa|up_4|NC_009632.1_2300873_2301812_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_009632.1_2302247_2302913_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_009632.1_2303064_2303385_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NC_009632.1_2303386_2304364_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_009632.1_2304629_2305721_+	NA	NA|35aa|down_0|NC_009632.1_2306153_2306258_-	NA	NA|57aa|down_1|NC_009632.1_2306774_2306945_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NC_009632.1_2306937_2307096_+	NA	NA|286aa|down_3|NC_009632.1_2307753_2308611_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NC_009632.1_2308678_2309461_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NC_009632.1_2309692_2311498_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NC_009632.1_2312178_2313717_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NC_009632.1_2313751_2315884_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NC_009632.1_2315895_2316330_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NC_009632.1_2316329_2317436_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	9	2318059-2318144	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_9|NC_009632.1_2306153_2306258_-,NA|53aa|up_7|NC_009632.1_2306937_2307096_+,NA	NA|35aa|up_9|NC_009632.1_2306153_2306258_-	NA	NA|57aa|up_8|NC_009632.1_2306774_2306945_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|up_7|NC_009632.1_2306937_2307096_+	NA	NA|286aa|up_6|NC_009632.1_2307753_2308611_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_009632.1_2308678_2309461_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_009632.1_2309692_2311498_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_009632.1_2312178_2313717_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_009632.1_2313751_2315884_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_009632.1_2315895_2316330_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_009632.1_2316329_2317436_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_009632.1_2325477_2326833_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_009632.1_2326859_2327792_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_009632.1_2327793_2328603_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_009632.1_2328791_2329700_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_009632.1_2335940_2337005_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NC_009632.1_2337152_2338595_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NC_009632.1_2338917_2339391_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NC_009632.1_2339489_2340833_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NC_009632.1_2341009_2341693_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NC_009632.1_2341711_2342899_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000017125.1_ASM1712v1	NC_009632	Staphylococcus aureus subsp. aureus JH1, complete sequence	10	2426099-2426179	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	14	2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154|2426124-2426154	NC_009632.1_872776-872806|NC_009632.1_872832-872862|NC_009632.1_83683-83713|NC_009632.1_424836-424806|NC_009632.1_692107-692077|NC_009632.1_909051-909081|NC_009632.1_1164609-1164639|NC_009632.1_1267167-1267137|NC_009632.1_1473267-1473237|NC_009632.1_1561672-1561702|NC_009632.1_1561788-1561818|NC_009632.1_1757932-1757902|NC_009632.1_2415323-2415353|NC_009632.1_2592321-2592351	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_009632.1_2416632_2416797_+,NA|106aa|up_8|NC_009632.1_2417041_2417359_+,NA|84aa|up_5|NC_009632.1_2422480_2422732_+,NA|62aa|up_0|NC_009632.1_2425871_2426057_+,NA	NA|55aa|up_9|NC_009632.1_2416632_2416797_+	NA	NA|106aa|up_8|NC_009632.1_2417041_2417359_+	NA	NA|1056aa|up_7|NC_009632.1_2417542_2420710_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_009632.1_2420826_2422092_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_009632.1_2422480_2422732_+	NA	NA|255aa|up_4|NC_009632.1_2422723_2423488_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_009632.1_2423649_2424090_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_009632.1_2424082_2425294_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_009632.1_2425395_2425746_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_009632.1_2425871_2426057_+	NA	NA|341aa|down_0|NC_009632.1_2426322_2427345_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_009632.1_2427364_2427964_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_009632.1_2427970_2428204_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_009632.1_2428209_2428656_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_009632.1_2428669_2429155_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_009632.1_2429151_2430411_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_009632.1_2430473_2430968_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_009632.1_2430969_2431476_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_009632.1_2431506_2432511_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_009632.1_2432680_2433286_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
