bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	4.1|848387|26|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.15	26	1	0	1	26	811349	811324	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	811324-811349	CGGGGCCCCAACACAGAAGCAGGCGG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	4.1|848387|26|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.15	26	1	0	1	26	2830381	2830406	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2830381-2830406	CCGCCAGCTTCTATGTTGGGGCCCCG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	4.1|848387|26|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.15	26	1	0	1	26	2830437	2830462	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2830437-2830462	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	4.1|848387|26|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	92.31	26	2	0	1	26	811405	811380	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	811380-811405	CGGGGCCCCAACATAGAAGCAGGCGG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	4.1|848387|26|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	92.31	26	2	0	1	26	954496	954471	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	954471-954496	CGGGGCCCCAACACAGAGGCTGGTGG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	5.1|891710|34|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	100.00	34	0	0	1	34	1380703	1380670	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1380670-1380703	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	5.1|891710|34|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	100.00	34	0	0	1	34	1469862	1469895	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1469862-1469895	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	6.1|954527|26|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.15	26	1	0	1	26	954471	954496	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	954471-954496	CGGGGCCCCAACACAGAGGCTGGTGG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	6.1|954527|26|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	92.31	26	2	0	1	26	811324	811349	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	811324-811349	CGGGGCCCCAACACAGAAGCAGGCGG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	6.1|954527|26|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	92.31	26	2	0	1	26	2830406	2830381	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2830381-2830406	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	6.1|954527|26|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	92.31	26	2	0	1	26	2830462	2830437	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2830437-2830462	CCGCCAGCTTCTTTGTTGGGGCCCCG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	6.3|954641|26|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.15	26	1	0	1	26	848468	848443	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	848443-848468	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	6.3|954641|26|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	92.31	26	2	0	1	26	394784	394809	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	394784-394809	CGGGGCCCCAACAAAGAAGCTGACGA	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	8.1|2030226|33|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.97	33	1	0	1	33	848423	848455	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	848423-848455	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	8.1|2030226|33|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.97	33	1	0	1	33	1172532	1172500	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1172500-1172532	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	8.1|2030226|33|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.97	33	1	0	1	33	1380657	1380625	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1380625-1380657	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	8.1|2030226|33|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.97	33	1	0	1	33	1695141	1695173	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1695141-1695173	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	8.1|2030226|33|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	96.97	33	1	0	1	33	2665031	2665063	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2665031-2665063	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	8.1|2030226|33|NC_010079|CRISPRCasFinder	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	1469908	1469940	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1469908-1469940	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.1|2389096|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	848423	848455	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	848423-848455	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.1|2389096|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	1172532	1172500	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1172500-1172532	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.1|2389096|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	1380657	1380625	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1380625-1380657	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.1|2389096|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	1469908	1469940	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1469908-1469940	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.1|2389096|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	2665031	2665063	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2665031-2665063	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.2|2389152|36|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	100.00	36	0	0	1	36	1172479	1172444	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1172444-1172479	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.2|2389152|36|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	97.22	36	1	0	1	36	1873629	1873594	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1873594-1873629	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.2|2389152|36|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	94.44	36	2	0	1	36	1695080	1695115	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1695080-1695115	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.2|2389152|36|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	94.44	36	2	0	1	36	2041029	2041064	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2041029-2041064	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.3|2389211|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	848423	848455	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	848423-848455	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.3|2389211|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	1172532	1172500	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1172500-1172532	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.3|2389211|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	1380657	1380625	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1380625-1380657	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	10.3|2389211|33|NC_010079|CRT	NC_010079.1	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	93.94	33	2	0	1	33	2665031	2665063	433451-433551|672616-672708|748957-749055|848357-848442|891686-891767|954497-954779|1088169-1088256|2030203-2030281|2265155-2265305|2389073-2389266	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2665031-2665063	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
