The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	780015	787835	2872915		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|780015_781071_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|781070_781757_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|781731_782205_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|782546_782987_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|783266_783851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|783949_784663_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|784666_785086_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|785087_785756_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|786106_786700_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|786683_787835_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	799807	814538	2872915		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|799807_800866_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197273.1|801216_801759_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|802382_803300_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|803390_803492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|803569_805075_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|805415_805916_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|805935_806802_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|807602_808001_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|807963_810069_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|810186_811158_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|811671_811827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|811865_812837_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|812823_813780_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|813776_814538_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	893248	909077	2872915	integrase,capsid	Staphylococcus_phage(64.71%)	21	895785:895801	909741:909757
WP_000571218.1|893248_894274_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|894266_894962_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|894979_895801_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
895785:895801	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266158.1|895943_897164_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|897251_897980_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|898003_898732_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000281658.1|898748_899207_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|899218_899551_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|899743_900007_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|899999_900272_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_078056051.1|900283_900457_+	pathogenicity island protein	NA	NA	NA	NA	NA
WP_001171846.1|900423_900627_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	7.5e-30
WP_000403840.1|900628_901012_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|901012_901261_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_000985235.1|901352_903725_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|904395_904740_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|904964_905171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|905157_906216_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|906399_906891_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000801979.1|907319_908288_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|908522_909077_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
909741:909757	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 4
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	999632	1053407	2872915	bacteriocin,tRNA,protease	Streptococcus_phage(33.33%)	52	NA	NA
WP_000448934.1|999632_1000622_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1000916_1001312_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|1001682_1002402_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000082731.1|1003555_1005364_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|1005823_1006630_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214075.1|1006652_1007018_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|1007121_1007715_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|1007900_1008248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1008264_1008900_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1008916_1009726_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|1009722_1010577_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|1010597_1011983_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1011992_1013837_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|1014114_1014885_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1015079_1016165_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570699.1|1016506_1018075_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|1018216_1018975_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|1019168_1019678_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154222.1|1019790_1020981_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1020958_1022134_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|1022566_1024048_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1024031_1024292_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049959.1|1024291_1025854_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|1026155_1026959_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_076035548.1|1027177_1029502_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|1029518_1030877_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|1031015_1032527_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1033013_1033583_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1033792_1034011_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1034091_1035078_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1035276_1035453_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1035467_1036070_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1036986_1037088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1037097_1037370_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1037413_1039378_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1039380_1039701_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|1039697_1040339_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795544.1|1040426_1040717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410720.1|1040995_1041283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719184.1|1041288_1042770_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1042858_1043215_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1043691_1044651_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1044696_1044828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1044891_1045107_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620953.1|1045271_1045823_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1045874_1046813_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190626.1|1046994_1048356_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526687.1|1048342_1050016_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150195.1|1050002_1050806_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1050798_1051620_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|1051858_1052188_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088780.1|1052225_1053407_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 5
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	1073393	1081866	2872915		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1073393_1073876_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1073862_1074987_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1074990_1075695_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1075694_1075958_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1075959_1076631_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1076623_1078813_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1078791_1080276_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1080268_1081297_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1081299_1081866_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	1523634	1605885	2872915	integrase,tRNA,protease,holin,tail,terminase,plate,capsid,head,portal	Staphylococcus_phage(85.33%)	103	1559997:1560017	1605890:1605910
WP_000858789.1|1523634_1524927_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1525248_1527942_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1527965_1528937_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1528923_1530126_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1530130_1531273_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1531513_1531831_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1532167_1532848_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1532919_1533507_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1533496_1534072_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1534085_1535330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1535336_1536635_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1536644_1537709_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1537734_1538901_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1539286_1539487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1539695_1540145_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1540236_1541196_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1541197_1541923_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1541925_1542498_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1542928_1543201_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1543371_1544370_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165536.1|1544386_1545697_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1545918_1547094_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1547350_1547542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1547658_1547775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1547805_1548465_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1548541_1549510_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1549624_1550611_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1550771_1550888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1551012_1552473_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1552625_1554005_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1553994_1554948_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1555055_1555304_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1555409_1555955_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1556233_1556353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1556551_1557466_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1557480_1557687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1557679_1558618_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1558674_1559592_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1559682_1559868_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1559997:1560017	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1560116_1561100_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1561095_1562034_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1562423_1563878_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|1563888_1564191_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1564326_1564626_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1564671_1564836_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1564828_1565218_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1565217_1566684_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1566683_1568594_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1568609_1568900_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1568899_1570483_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1570491_1571316_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|1571315_1577516_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1577529_1577688_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1577729_1578080_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1578137_1578593_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1578684_1579326_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1579360_1579756_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1579756_1580158_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1580154_1580487_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1580498_1580777_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1580845_1582009_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1582020_1582794_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|1582777_1584016_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|1584020_1585712_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1585701_1586007_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1586133_1586448_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1586604_1587042_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|1587054_1588422_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|1588402_1588693_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1588826_1588925_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1589033_1591481_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1591768_1591969_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1592036_1592189_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|1592185_1592572_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1592564_1592801_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1592793_1592997_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1592993_1593200_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1593236_1593773_-	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1593765_1594014_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1594028_1594271_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1594285_1594486_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1594488_1594746_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1594745_1595147_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1595146_1595332_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1595344_1597297_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1597364_1597922_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1597947_1599114_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1599110_1599473_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1599486_1599747_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1599751_1600054_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1600046_1600364_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|1600629_1600893_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1600917_1601133_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|1601179_1601419_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001001356.1|1601415_1601592_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001115060.1|1601675_1601867_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1602027_1602357_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525001.1|1602369_1602831_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000755722.1|1602848_1603283_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|1603311_1603707_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1603796_1603943_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1603939_1604554_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1604679_1605885_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
1605890:1605910	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
>prophage 7
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	1666703	1675015	2872915	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1666703_1667489_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1667614_1668505_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1668514_1669861_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1669974_1671075_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1671077_1671755_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1671885_1672992_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1673215_1675015_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 8
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	1744152	1753195	2872915	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1744152_1744671_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1744692_1746966_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1747168_1749448_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1749722_1749983_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1750001_1751141_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1751163_1752189_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1752190_1753195_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	1878657	1957988	2872915	transposase,tRNA,protease	Staphylococcus_phage(96.43%)	72	NA	NA
WP_001050548.1|1878657_1885218_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1885543_1885855_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1885876_1888294_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1888581_1889763_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1889872_1890826_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1890822_1891386_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1891505_1891907_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1893485_1894313_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1894315_1894435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1894546_1895548_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1895669_1896134_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1896146_1897328_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1897338_1897971_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1897977_1899021_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261677.1|1899501_1901004_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1901526_1901841_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1901840_1903133_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1903150_1903546_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1903840_1904695_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1904970_1905195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1905393_1905864_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1905976_1906420_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1906406_1906850_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1907145_1907781_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1908220_1908934_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1909193_1909496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1909751_1910117_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1910113_1910467_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1912549_1913383_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1913594_1914503_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1914627_1915821_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1916191_1917784_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_002868962.1|1918779_1919526_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1919530_1920004_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1920069_1920327_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1920323_1921325_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1921329_1922808_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1922966_1923422_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1923724_1924375_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1924455_1925451_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000627551.1|1926193_1926538_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1926635_1927187_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1927404_1928046_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1928159_1928345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1928346_1928523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1928533_1928917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1929520_1929664_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1929866_1929962_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1930084_1930186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1930533_1930911_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000072576.1|1936392_1937592_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1937584_1939141_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1939304_1939439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1939503_1940223_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1940373_1941090_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1941191_1941299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1941247_1941967_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1942087_1942807_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1942864_1943587_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1943711_1944419_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1945382_1945949_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1946422_1947121_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1947117_1947879_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1947875_1948568_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1948590_1949964_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1949973_1950492_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1950507_1951752_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1951744_1954738_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1954802_1954946_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1955682_1955826_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1956067_1957051_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1957052_1957988_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 10
NC_010079	Staphylococcus aureus subsp. aureus USA300_TCH1516, complete sequence	2872915	2043125	2139560	2872915	integrase,tRNA,protease,holin,tail,terminase,capsid,head,portal	Staphylococcus_phage(91.03%)	117	2104551:2104568	2129482:2129499
WP_000027928.1|2043125_2044583_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2044584_2044887_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957015.1|2045253_2046792_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2046880_2048080_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2048092_2050096_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2050099_2052292_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272069.1|2052288_2052981_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2053152_2053455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2053563_2054859_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|2055719_2056886_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2056916_2057243_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2057534_2057708_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|2057688_2058291_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2058561_2059383_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2059375_2060845_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2061028_2062105_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2062124_2062919_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2062990_2063098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323167.1|2063108_2064671_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2064875_2065973_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2066344_2066905_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2066957_2067887_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2068081_2068255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2068306_2069686_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2069805_2070834_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2071103_2071505_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2072077_2072251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2072701_2073742_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2073798_2074641_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2074637_2075195_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2075254_2075779_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2075899_2076463_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2076528_2077269_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2077268_2078141_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2078137_2078818_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2078818_2079715_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2079711_2080092_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2080355_2080532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2080774_2080873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2081072_2082359_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|2082983_2084738_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2085695_2085875_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2086185_2086446_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2086498_2086849_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2087533_2087983_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|2089062_2089554_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2089744_2090500_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2090511_2090766_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2090817_2090925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2090977_2091154_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2091303_2091600_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2091657_2091945_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2091991_2092144_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2092133_2095919_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567394.1|2095934_2097419_-|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001551779.1|2097415_2101945_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001549167.1|2102001_2102139_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096354.1|2102189_2102540_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2102589_2102829_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2102855_2103500_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2103503_2103908_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2103904_2104309_-	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2104305_2104668_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2104551:2104568	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2104651_2104936_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2104925_2105210_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2105229_2106375_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2106398_2107136_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2107119_2108307_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2108322_2109984_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2109980_2110325_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2110454_2110754_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2110985_2111402_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2111429_2111630_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2111629_2111779_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2111775_2112162_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2112158_2112365_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2112361_2112607_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2112643_2113177_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2113169_2113412_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2113401_2113638_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2113630_2114002_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2114010_2114253_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2114256_2114625_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2114637_2115042_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2115050_2115269_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2115275_2116169_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934753.1|2116198_2116669_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_071665632.1|2116669_2117287_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2117367_2118288_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2118289_2120233_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2120241_2120505_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2120513_2120774_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2120813_2121074_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2121168_2121330_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|2121326_2121647_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2121705_2121936_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001001356.1|2121932_2122109_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001148642.1|2122124_2122877_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|2122927_2123257_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2123245_2123461_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2123476_2123740_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2123736_2123910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2123872_2124586_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2124601_2125534_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2125539_2125881_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2126084_2126267_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|2126344_2127058_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|2127248_2128286_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_000595324.1|2129404_2130421_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2129482:2129499	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2130442_2131498_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206639.1|2131932_2133156_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812010.1|2133527_2134373_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2134434_2135346_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2135506_2136814_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2137666_2138110_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2138274_2138652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2138969_2139560_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
