assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	1	369604-370302	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	369892-369933|369967-369999	NC_009565.1_377863-377904|NC_009565.1_376678-376710	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NC_009565.1_366616_366919_+,NA|161aa|down_1|NC_009565.1_379652_380135_-,NA|410aa|down_5|NC_009565.1_382251_383481_+	NA|262aa|up_9|NC_009565.1_361311_362097_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NC_009565.1_362085_362889_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NC_009565.1_362898_364296_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NC_009565.1_364474_366250_+	pfam00934, PE, PE family	NA|76aa|up_5|NC_009565.1_366392_366620_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NC_009565.1_366616_366919_+	NA	NA|74aa|up_3|NC_009565.1_366966_367188_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NC_009565.1_367184_367610_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NC_009565.1_367745_368378_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NC_009565.1_368374_369283_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NC_009565.1_378993_379665_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NC_009565.1_379652_380135_-	NA	NA|239aa|down_2|NC_009565.1_380192_380909_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NC_009565.1_381010_381667_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NC_009565.1_381736_382228_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NC_009565.1_382251_383481_+	NA	NA|621aa|down_6|NC_009565.1_383635_385498_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NC_009565.1_385569_385956_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NC_009565.1_385958_386621_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NC_009565.1_386681_387566_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	2	634510-634647	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	634528-634545|634528-634545|634612-634629	NC_009565.1_22567-22584|NC_009565.1_1415833-1415850|NC_009565.1_977064-977081	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NC_009565.1_625264_625426_-,NA|478aa|up_0|NC_009565.1_631525_632959_-,NA|450aa|down_2|NC_009565.1_636282_637632_-,NA|93aa|down_5|NC_009565.1_639162_639441_-	NA|325aa|up_9|NC_009565.1_623034_624009_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NC_009565.1_624050_625268_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NC_009565.1_625264_625426_-	NA	NA|106aa|up_6|NC_009565.1_625472_625790_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|623aa|up_5|NC_009565.1_625936_627805_+	pfam00934, PE, PE family	NA|336aa|up_4|NC_009565.1_627700_628708_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NC_009565.1_628789_629668_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NC_009565.1_629684_630479_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NC_009565.1_630475_631516_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NC_009565.1_631525_632959_-	NA	NA|211aa|down_0|NC_009565.1_634970_635603_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NC_009565.1_635599_636262_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NC_009565.1_636282_637632_-	NA	NA|381aa|down_3|NC_009565.1_637643_638786_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NC_009565.1_638800_639103_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NC_009565.1_639162_639441_-	NA	NA|418aa|down_6|NC_009565.1_639437_640691_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NC_009565.1_640810_641197_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NC_009565.1_641259_642144_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NC_009565.1_642239_643142_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	3	695253-695329	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NC_009565.1_680937_681153_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NC_009565.1_681149_681557_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NC_009565.1_681616_682303_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NC_009565.1_682456_685090_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NC_009565.1_685112_687500_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NC_009565.1_687637_688360_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NC_009565.1_688356_689154_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NC_009565.1_689155_690043_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NC_009565.1_690048_691263_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NC_009565.1_692286_693732_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_009565.1_696464_698015_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_009565.1_698066_698459_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_009565.1_698455_698713_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_009565.1_698895_700131_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_009565.1_700381_700795_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_009565.1_700791_701028_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_009565.1_701131_701638_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_009565.1_701751_702222_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_009565.1_702265_703027_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_009565.1_703083_703395_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	4	788327-788482	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGAGCAATGAGCACCGCGAAGGCGACCGGCGAGTAG	36	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|85aa|down_4|NC_009565.1_792917_793172_-	NA|241aa|up_9|NC_009565.1_777824_778547_+	COG3327, PaaX, Phenylacetic acid-responsive transcriptional repressor [Transcription]	NA|264aa|up_8|NC_009565.1_778543_779335_+	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein	NA|965aa|up_7|NC_009565.1_779346_782241_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|143aa|up_6|NC_009565.1_782237_782666_-	pfam05423, Mycobact_memb, Mycobacterium membrane protein	NA|166aa|up_5|NC_009565.1_782750_783248_+	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|166aa|up_4|NC_009565.1_783303_783801_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|125aa|up_3|NC_009565.1_783802_784177_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|197aa|up_2|NC_009565.1_784481_785072_+	pfam13305, WHG, WHG domain	NA|125aa|up_1|NC_009565.1_785320_785695_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|157aa|up_0|NC_009565.1_785694_786165_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|397aa|down_0|NC_009565.1_788581_789772_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|266aa|down_1|NC_009565.1_789909_790707_+	pfam09851, SHOCT, Short C-terminal domain	NA|276aa|down_2|NC_009565.1_790859_791687_+	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|407aa|down_3|NC_009565.1_791700_792921_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|85aa|down_4|NC_009565.1_792917_793172_-	NA	NA|350aa|down_5|NC_009565.1_793784_794834_-	COG4427, COG4427, Uncharacterized protein conserved in bacteria [Function unknown]	NA|199aa|down_6|NC_009565.1_794830_795427_-	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|30aa|down_7|NC_009565.1_795517_795607_+	TIGR03969, conserved_hypothetical_protein, mycofactocin precursor	NA|104aa|down_8|NC_009565.1_795609_795921_+	TIGR03967, hypothetical_protein_FraEuI1cDRAFT_6405, putative mycofactocin binding protein MftB	NA|392aa|down_9|NC_009565.1_795917_797093_+	TIGR03962, mycofact_rSAM, mycofactocin radical SAM maturase
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	5	929131-930033	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGNGGNNCCGGCGG	21	1	3	929869-929904|929869-929904|929869-929904	NC_009565.1_678356-678321|NC_009565.1_1217516-1217551|NC_009565.1_2437353-2437318	NA	18	18	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NC_009565.1_934034_934586_-,NA|81aa|down_9|NC_009565.1_941407_941650_+	NA|685aa|up_9|NC_009565.1_916767_918822_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_009565.1_918987_920157_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_009565.1_920244_921261_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_009565.1_921422_922064_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_009565.1_922144_923200_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_009565.1_923251_923644_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_009565.1_923701_924124_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NC_009565.1_924085_924376_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NC_009565.1_924480_925386_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NC_009565.1_925404_926220_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NC_009565.1_930302_932942_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_009565.1_933409_934054_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_009565.1_934034_934586_-	NA	NA|421aa|down_3|NC_009565.1_934703_935965_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|218aa|down_4|NC_009565.1_936093_936747_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_5|NC_009565.1_936817_937846_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_6|NC_009565.1_938534_939305_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_7|NC_009565.1_939391_940204_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_8|NC_009565.1_940271_941132_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_9|NC_009565.1_941407_941650_+	NA
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	6	1195086-1195194	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NC_009565.1_1184453_1186085_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NC_009565.1_1186160_1187225_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NC_009565.1_1187277_1187751_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NC_009565.1_1187784_1188648_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NC_009565.1_1188652_1189510_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NC_009565.1_1189510_1190593_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NC_009565.1_1190673_1191093_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NC_009565.1_1191204_1191771_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NC_009565.1_1191767_1192163_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NC_009565.1_1192190_1194194_-	pfam00934, PE, PE family	NA|588aa|down_0|NC_009565.1_1196279_1198043_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NC_009565.1_1198039_1198813_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NC_009565.1_1198824_1199862_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NC_009565.1_1200048_1200885_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NC_009565.1_1201000_1201852_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NC_009565.1_1201925_1203143_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NC_009565.1_1203195_1204140_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NC_009565.1_1204362_1205430_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NC_009565.1_1205486_1206881_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NC_009565.1_1207082_1207805_+	pfam06271, RDD, RDD family
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	7	1576526-1577598	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1576726-1576747	NC_009565.1_1215833-1215812	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NC_009565.1_1568289_1568607_+,NA	NA|103aa|up_9|NC_009565.1_1565804_1566113_+	pfam00934, PE, PE family	NA|540aa|up_8|NC_009565.1_1566109_1567729_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NC_009565.1_1568289_1568607_+	NA	NA|209aa|up_6|NC_009565.1_1568741_1569368_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NC_009565.1_1569433_1569766_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NC_009565.1_1569781_1571038_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NC_009565.1_1571165_1572377_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NC_009565.1_1572449_1573928_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NC_009565.1_1573924_1575310_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NC_009565.1_1575387_1576422_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NC_009565.1_1578452_1578854_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NC_009565.1_1578850_1579108_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NC_009565.1_1579190_1580150_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NC_009565.1_1580174_1581137_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NC_009565.1_1581270_1581873_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NC_009565.1_1581953_1583921_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NC_009565.1_1583938_1584763_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NC_009565.1_1584931_1585414_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NC_009565.1_1585485_1586310_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NC_009565.1_1586506_1587445_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	8	2096485-2096739	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2096566-2096583|2096566-2096583|2096656-2096673	NC_009565.1_404159-404142|NC_009565.1_610582-610565|NC_009565.1_3461979-3461962	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NC_009565.1_2095844_2096108_-,NA	NA|165aa|up_9|NC_009565.1_2082194_2082689_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NC_009565.1_2083036_2083714_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NC_009565.1_2084072_2086898_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_009565.1_2087124_2087985_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_009565.1_2088025_2088892_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_009565.1_2088896_2090783_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_009565.1_2090798_2092832_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_009565.1_2092951_2095177_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_009565.1_2095452_2095848_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_009565.1_2095844_2096108_-	NA	NA|346aa|down_0|NC_009565.1_2097876_2098914_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_009565.1_2098913_2100281_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NC_009565.1_2100454_2101891_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NC_009565.1_2101926_2103378_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NC_009565.1_2103407_2104358_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NC_009565.1_2104372_2104789_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NC_009565.1_2105066_2105489_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NC_009565.1_2105537_2105840_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NC_009565.1_2105836_2106151_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NC_009565.1_2106150_2107884_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	9	2177069-2177288	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NC_009565.1_2168181_2168589_-,NA|127aa|down_5|NC_009565.1_2184804_2185185_-	NA|741aa|up_9|NC_009565.1_2162149_2164372_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NC_009565.1_2164409_2164853_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NC_009565.1_2164966_2165560_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NC_009565.1_2165642_2166248_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NC_009565.1_2166347_2167352_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NC_009565.1_2167451_2168204_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NC_009565.1_2168181_2168589_-	NA	NA|368aa|up_2|NC_009565.1_2168723_2169827_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NC_009565.1_2169826_2171023_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1458aa|up_0|NC_009565.1_2171192_2175566_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_009565.1_2179315_2179780_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_009565.1_2179877_2180741_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_009565.1_2180778_2182050_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_009565.1_2182321_2183437_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_009565.1_2183427_2184768_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_009565.1_2184804_2185185_-	NA	NA|621aa|down_6|NC_009565.1_2185341_2187204_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_009565.1_2187211_2187691_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_009565.1_2187927_2188701_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NC_009565.1_2188704_2189472_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	10	3131140-3132494	2,6,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NC_009565.1_3124419_3124674_-,NA|135aa|up_7|NC_009565.1_3124821_3125226_+,NA|64aa|up_6|NC_009565.1_3125222_3125414_+,NA|86aa|up_4|NC_009565.1_3127000_3127258_+,NA|104aa|up_3|NC_009565.1_3127362_3127674_+,NA|203aa|up_2|NC_009565.1_3128093_3128702_+,NA	NA|92aa|up_9|NC_009565.1_3123968_3124244_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NC_009565.1_3124419_3124674_-	NA	NA|135aa|up_7|NC_009565.1_3124821_3125226_+	NA	NA|64aa|up_6|NC_009565.1_3125222_3125414_+	NA	NA|385aa|up_5|NC_009565.1_3125612_3126767_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NC_009565.1_3127000_3127258_+	NA	NA|104aa|up_3|NC_009565.1_3127362_3127674_+	NA	NA|203aa|up_2|NC_009565.1_3128093_3128702_+	NA	NA|470aa|up_1|NC_009565.1_3128772_3130182_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_009565.1_3130178_3130991_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NC_009565.1_3132520_3133782_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NC_009565.1_3135253_3135595_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NC_009565.1_3135595_3136612_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NC_009565.1_3136624_3137773_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NC_009565.1_3137868_3138996_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NC_009565.1_3138992_3139901_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NC_009565.1_3139881_3140592_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NC_009565.1_3140601_3140976_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NC_009565.1_3140972_3143411_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NC_009565.1_3143407_3144130_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	11	3133859-3135205	3,7,5	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	18,18,18	18	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NC_009565.1_3124419_3124674_-,NA|135aa|up_8|NC_009565.1_3124821_3125226_+,NA|64aa|up_7|NC_009565.1_3125222_3125414_+,NA|86aa|up_5|NC_009565.1_3127000_3127258_+,NA|104aa|up_4|NC_009565.1_3127362_3127674_+,NA|203aa|up_3|NC_009565.1_3128093_3128702_+,NA	NA|85aa|up_9|NC_009565.1_3124419_3124674_-	NA	NA|135aa|up_8|NC_009565.1_3124821_3125226_+	NA	NA|64aa|up_7|NC_009565.1_3125222_3125414_+	NA	NA|385aa|up_6|NC_009565.1_3125612_3126767_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NC_009565.1_3127000_3127258_+	NA	NA|104aa|up_4|NC_009565.1_3127362_3127674_+	NA	NA|203aa|up_3|NC_009565.1_3128093_3128702_+	NA	NA|470aa|up_2|NC_009565.1_3128772_3130182_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NC_009565.1_3130178_3130991_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NC_009565.1_3132520_3133782_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NC_009565.1_3135253_3135595_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_009565.1_3135595_3136612_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NC_009565.1_3136624_3137773_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NC_009565.1_3137868_3138996_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_009565.1_3138992_3139901_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_009565.1_3139881_3140592_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_009565.1_3140601_3140976_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NC_009565.1_3140972_3143411_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NC_009565.1_3143407_3144130_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NC_009565.1_3144529_3145075_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	12	3753072-3753751	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTNGCCGCC	23	0	0	NA	NA	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_3|NC_009565.1_3767793_3768081_-,NA|87aa|down_8|NC_009565.1_3781201_3781462_-	NA|282aa|up_9|NC_009565.1_3732263_3733109_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NC_009565.1_3733583_3734024_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NC_009565.1_3734057_3734927_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NC_009565.1_3734947_3735958_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NC_009565.1_3736242_3736875_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NC_009565.1_3736941_3738171_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NC_009565.1_3738453_3739803_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NC_009565.1_3739814_3740954_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NC_009565.1_3740950_3741682_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2538aa|up_0|NC_009565.1_3741690_3749304_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NC_009565.1_3755662_3755920_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|down_1|NC_009565.1_3766275_3766722_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_2|NC_009565.1_3766758_3767577_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_3|NC_009565.1_3767793_3768081_-	NA	NA|3717aa|down_4|NC_009565.1_3768417_3779568_-	pfam00823, PPE, PPE family	NA|265aa|down_5|NC_009565.1_3779811_3780606_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NC_009565.1_3780687_3781059_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_7|NC_009565.1_3780956_3781367_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_8|NC_009565.1_3781201_3781462_-	NA	NA|130aa|down_9|NC_009565.1_3781576_3781966_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	13	3859276-3859365	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_6|NC_009565.1_3852671_3852902_+,NA|73aa|up_2|NC_009565.1_3857341_3857560_-,NA|121aa|down_0|NC_009565.1_3860350_3860713_-,NA|52aa|down_2|NC_009565.1_3862554_3862710_-,NA|52aa|down_3|NC_009565.1_3862734_3862890_-	NA|212aa|up_9|NC_009565.1_3850350_3850986_-	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|169aa|up_8|NC_009565.1_3850982_3851489_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|409aa|up_7|NC_009565.1_3851485_3852712_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_6|NC_009565.1_3852671_3852902_+	NA	NA|177aa|up_5|NC_009565.1_3853529_3854060_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|177aa|up_4|NC_009565.1_3854326_3854857_+	pfam00823, PPE, PPE family	NA|725aa|up_3|NC_009565.1_3855174_3857349_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|73aa|up_2|NC_009565.1_3857341_3857560_-	NA	NA|100aa|up_1|NC_009565.1_3858054_3858354_+	pfam00934, PE, PE family	NA|181aa|up_0|NC_009565.1_3858439_3858982_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NC_009565.1_3860350_3860713_-	NA	NA|179aa|down_1|NC_009565.1_3860875_3861412_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NC_009565.1_3862554_3862710_-	NA	NA|52aa|down_3|NC_009565.1_3862734_3862890_-	NA	NA|461aa|down_4|NC_009565.1_3864082_3865465_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NC_009565.1_3865502_3866924_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|285aa|down_6|NC_009565.1_3867650_3868505_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_7|NC_009565.1_3868726_3870601_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_8|NC_009565.1_3870622_3871099_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)	NA|281aa|down_9|NC_009565.1_3871108_3871951_+	pfam12740, Chlorophyllase2, Chlorophyllase enzyme
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	14	3961544-3962174	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGNNCCGGCGGNNCCGGCGGC	25	3	3	3961806-3961852|3961878-3961936|3961962-3962008	NC_009565.1_3962394-3962440|NC_009565.1_3962466-3962524|NC_009565.1_3962550-3962596	NA	8	8	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NC_009565.1_3966214_3967054_+	NA|64aa|up_9|NC_009565.1_3934417_3934609_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NC_009565.1_3934823_3936026_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NC_009565.1_3936050_3937172_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NC_009565.1_3937242_3938751_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1404aa|up_5|NC_009565.1_3938921_3943133_+	pfam00934, PE, PE family	NA|2320aa|up_4|NC_009565.1_3943423_3950383_+	pfam00934, PE, PE family	NA|516aa|up_3|NC_009565.1_3950549_3952097_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NC_009565.1_3952093_3952930_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1889aa|up_1|NC_009565.1_3953289_3958956_+	pfam00934, PE, PE family	NA|219aa|up_0|NC_009565.1_3959084_3959741_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NC_009565.1_3963607_3965254_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NC_009565.1_3965327_3966119_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NC_009565.1_3966214_3967054_+	NA	NA|399aa|down_3|NC_009565.1_3967108_3968305_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NC_009565.1_3968333_3969044_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NC_009565.1_3969108_3970152_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NC_009565.1_3970304_3971216_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NC_009565.1_3971231_3972296_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NC_009565.1_3972312_3973497_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NC_009565.1_3973538_3974570_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_000016925.1_ASM1692v1	NC_009565	Mycobacterium tuberculosis F11, complete genome	15	4123679-4123767	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NC_009565.1_4114265_4115036_-,NA|119aa|up_3|NC_009565.1_4120170_4120527_+,NA|52aa|up_2|NC_009565.1_4120626_4120782_+,NA|233aa|up_0|NC_009565.1_4122783_4123482_-,NA|126aa|down_6|NC_009565.1_4129002_4129380_+	NA|288aa|up_9|NC_009565.1_4112647_4113511_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NC_009565.1_4114265_4115036_-	NA	NA|549aa|up_7|NC_009565.1_4115032_4116679_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NC_009565.1_4116675_4117539_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NC_009565.1_4117531_4118458_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NC_009565.1_4118459_4120085_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NC_009565.1_4120170_4120527_+	NA	NA|52aa|up_2|NC_009565.1_4120626_4120782_+	NA	NA|652aa|up_1|NC_009565.1_4120792_4122748_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_009565.1_4122783_4123482_-	NA	NA|173aa|down_0|NC_009565.1_4123827_4124346_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_009565.1_4124346_4125330_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_009565.1_4125322_4126516_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_009565.1_4126521_4127343_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_009565.1_4127474_4128158_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_009565.1_4128157_4128895_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_009565.1_4129002_4129380_+	NA	NA|225aa|down_7|NC_009565.1_4129478_4130153_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_009565.1_4130258_4131053_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_009565.1_4131059_4131515_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
