bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	182278	182257	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	182257-182278	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	305353	305332	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	305332-305353	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	692167	692146	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	692146-692167	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	818252	818273	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	818252-818273	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	908913	908934	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	908913-908934	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	1473330	1473309	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	1473309-1473330	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	1561862	1561883	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	1561862-1561883	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	1743440	1743461	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	1743440-1743461	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	1757995	1757974	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	1757974-1757995	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	2075725	2075746	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	2075725-2075746	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.45	22	1	0	1	22	1023234	1023255	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.001	33.3	1.0	CCTGTAGAATTTCTTTTCGAAA	1023234-1023255	CCTGTAGAATTTCTTTTAGAAA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.45	22	1	0	1	22	1777702	1777723	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.001	33.3	1.0	CCTGTAGAATTTCTTTTCGAAA	1777702-1777723	CCTGTAGAATTTCTTTACGAAA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.1|865649|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.45	22	1	0	1	22	1777935	1777956	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.001	33.3	1.0	CCTGTAGAATTTCTTTTCGAAA	1777935-1777956	CCTGTAGAATTTCTTTACGAAA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.2|865707|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	819224	819202	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	819202-819224	ATTGGATTCCCAATTTCTACAGA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.2|865707|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	819502	819480	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	819480-819502	ATTGGATTCCCAATTTCTACAGA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.2|865707|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	1473447	1473425	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	1473425-1473447	ATTGGATTCCCAATTTCTACAGA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.2|865707|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	2075783	2075805	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	2075783-2075805	TCTGTAGAAATTGGGAATCCAAT	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.2|865707|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	2415394	2415416	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	2415394-2415416	TCTGTAGAAATTGGGAATCCAAT	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.2|865707|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	91.30	23	2	0	1	23	1561745	1561767	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.003	31.7	1.0	TCTGTAGAAATTGGAAATCCAAT	1561745-1561767	TCTGTAGAAATTGGGAATACAAT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.2|865707|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	91.30	23	2	0	1	23	2176688	2176710	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.003	31.7	1.0	TCTGTAGAAATTGGAAATCCAAT	2176688-2176710	TCTGTTGAAATTGGGAATCCAAT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	182278	182257	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	182257-182278	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	305353	305332	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	305332-305353	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	692167	692146	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	692146-692167	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	818252	818273	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	818252-818273	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	908913	908934	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	908913-908934	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	1473330	1473309	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	1473309-1473330	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	1561862	1561883	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	1561862-1561883	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	1743440	1743461	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	1743440-1743461	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	1757995	1757974	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	1757974-1757995	TTTCGAAAAGAAATTCTACAGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	22	0	0	1	22	2075725	2075746	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-04	36.5	1.0	CCTGTAGAATTTCTTTTCGAAA	2075725-2075746	CCTGTAGAATTTCTTTTCGAAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.45	22	1	0	1	22	1023234	1023255	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.001	33.3	1.0	CCTGTAGAATTTCTTTTCGAAA	1023234-1023255	CCTGTAGAATTTCTTTTAGAAA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.45	22	1	0	1	22	1777702	1777723	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.001	33.3	1.0	CCTGTAGAATTTCTTTTCGAAA	1777702-1777723	CCTGTAGAATTTCTTTACGAAA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.3|865766|22|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.45	22	1	0	1	22	1777935	1777956	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.001	33.3	1.0	CCTGTAGAATTTCTTTTCGAAA	1777935-1777956	CCTGTAGAATTTCTTTACGAAA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.4|865824|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	819224	819202	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	819202-819224	ATTGGATTCCCAATTTCTACAGA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.4|865824|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	819502	819480	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	819480-819502	ATTGGATTCCCAATTTCTACAGA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.4|865824|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	1473447	1473425	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	1473425-1473447	ATTGGATTCCCAATTTCTACAGA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.4|865824|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	2075783	2075805	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	2075783-2075805	TCTGTAGAAATTGGGAATCCAAT	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.4|865824|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	95.65	23	1	0	1	23	2415394	2415416	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-04	34.9	1.0	TCTGTAGAAATTGGAAATCCAAT	2415394-2415416	TCTGTAGAAATTGGGAATCCAAT	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.4|865824|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	91.30	23	2	0	1	23	1561745	1561767	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.003	31.7	1.0	TCTGTAGAAATTGGAAATCCAAT	1561745-1561767	TCTGTAGAAATTGGGAATACAAT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	4.4|865824|23|NC_009487|CRT	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	91.30	23	2	0	1	23	2176688	2176710	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.003	31.7	1.0	TCTGTAGAAATTGGAAATCCAAT	2176688-2176710	TCTGTTGAAATTGGGAATCCAAT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	5.1|908864|34|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	97.06	34	1	0	1	34	1473438	1473405	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-09	52.3	1.0	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT	1473405-1473438	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	6.1|1743390|33|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	96.97	33	1	0	1	33	1473438	1473406	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	1473406-1473438	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	7.2|1777902|22|NC_009487|PILER-CR	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	90.91	22	2	0	1	22	1261805	1261784	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.010	30.1	1.0	TGAAATTGGGGTTCCAATTTCT	1261784-1261805	AGAAATTGGATCACCAATTTCA	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	7.2|1777902|22|NC_009487|PILER-CR	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	90.91	22	2	0	1	22	2176576	2176597	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.010	30.1	1.0	TGAAATTGGGGTTCCAATTTCT	2176576-2176597	TGAAATTGGGAATCCAATTTCT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	7.2|1777902|22|NC_009487|PILER-CR	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	90.91	22	2	0	1	22	2176693	2176714	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	0.010	30.1	1.0	TGAAATTGGGGTTCCAATTTCT	2176693-2176714	TGAAATTGGGAATCCAATTTCT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	8.1|2176631|34|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	34	0	0	1	34	860157	860190	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	5e-10	55.5	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	860157-860190	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	8.1|2176631|34|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	100.00	34	0	0	1	34	1261695	1261662	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	5e-10	55.5	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1261662-1261695	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	0
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	8.1|2176631|34|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	97.06	34	1	0	1	34	1870108	1870075	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-09	52.3	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1870075-1870108	CCAACACAAAGAATTTCGAAAAGAAATTCTACAA	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	8.1|2176631|34|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	94.12	34	2	0	1	34	1477779	1477812	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-08	49.1	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1477779-1477812	TTGTGGAATTTCTTATCGAAATTCTCTGTGTTGG	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	8.1|2176631|34|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	94.12	34	2	0	1	34	2866044	2866077	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	4e-08	49.1	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	2866044-2866077	TTGTAGAATTTCTTTTCGAAATTCTTTTTGTTGG	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	96.77	31	1	0	1	31	872901	872931	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	7e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	872901-872931	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	96.77	31	1	0	1	31	872957	872987	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	7e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	872957-872987	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	83614	83644	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	83614-83644	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	424766	424736	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	424736-424766	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	692231	692201	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	692201-692231	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	909176	909206	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	909176-909206	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	1164735	1164765	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1164735-1164765	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	1267293	1267263	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1267263-1267293	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	1473394	1473364	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1473364-1473394	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	1561798	1561828	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1561798-1561828	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	1561914	1561944	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1561914-1561944	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	1758058	1758028	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1758028-1758058	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	2415447	2415477	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2415447-2415477	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_009487	Staphylococcus aureus subsp. aureus JH9, complete sequence	11.1|2426248|31|NC_009487|CRISPRCasFinder	NC_009487.1	Staphylococcus aureus subsp. aureus JH9, complete sequence	93.55	31	2	0	1	31	2592445	2592475	463474-463575|819211-819293|860158-860236|865613-865882|908840-908921|1743364-1743448|1777795-1777942|2176607-2176688|2305863-2305943|2318184-2318269|2426223-2426303	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2592445-2592475	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
