The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009511	Sphingomonas wittichii RW1, complete sequence	5382261	46706	55169	5382261		Burkholderia_phage(16.67%)	11	NA	NA
WP_011950898.1|46706_46979_+	HU family DNA-binding protein	NA	Q6QIE5	Burkholderia_phage	64.0	1.7e-21
WP_011950899.1|47309_47702_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0D4DCG1	Acinetobacter_phage	34.8	1.1e-05
WP_029548810.1|47724_47907_-	type II toxin-antitoxin system HicA family toxin	NA	D6R431	Bacillus_phage	42.9	1.4e-06
WP_011950901.1|47975_48782_-	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA	NA
WP_011950902.1|48910_49090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011950903.1|49130_49778_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011950904.1|49890_50949_+	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A1X6WFP1	Pacmanvirus	27.0	1.1e-15
WP_011950905.1|50945_52040_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	37.7	2.9e-27
WP_011950906.1|52036_52372_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_011950907.1|52455_53235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011950908.1|53420_55169_+	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	36.7	5.1e-42
>prophage 2
NC_009511	Sphingomonas wittichii RW1, complete sequence	5382261	2414593	2455530	5382261	tail,protease,portal,terminase,transposase	Stenotrophomonas_phage(28.57%)	43	NA	NA
WP_011952989.1|2414593_2415571_+|protease	aspartyl protease family protein	protease	NA	NA	NA	NA
WP_011952990.1|2415646_2416198_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_011952991.1|2416200_2416866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011952992.1|2417202_2418237_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011952993.1|2418387_2419185_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_011952994.1|2419184_2419535_-	GFA family protein	NA	NA	NA	NA	NA
WP_011952995.1|2419548_2419902_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_011952996.1|2419977_2420874_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011952997.1|2420967_2422113_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_011952998.1|2422285_2423887_+	acetyl-CoA carboxylase subunit beta	NA	A0A1B2ITV7	Pike_perch_iridovirus	62.5	1.2e-18
WP_011952999.1|2424107_2425979_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_011953000.1|2425998_2426697_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011953001.1|2426689_2427148_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_011953002.1|2427279_2428092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953003.1|2428427_2429294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011950708.1|2429591_2430404_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041379233.1|2430892_2431207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041379234.1|2431308_2431746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953005.1|2431745_2432120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041379668.1|2432202_2432634_-	hypothetical protein	NA	A0A218MKM6	uncultured_virus	44.3	2.0e-24
WP_011953007.1|2432771_2433212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953008.1|2433278_2433572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953009.1|2433568_2436169_-	hypothetical protein	NA	G8GWG3	Rhodobacter_phage	40.5	2.7e-23
WP_011953010.1|2436179_2436779_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_011953011.1|2436784_2439700_-	DUF1983 domain-containing protein	NA	NA	NA	NA	NA
WP_011953012.1|2439699_2440500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953013.1|2440503_2440866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953014.1|2440865_2443892_-|tail	phage tail length tape measure family protein	tail	NA	NA	NA	NA
WP_011953015.1|2443983_2444475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953016.1|2444535_2445246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158305156.1|2445232_2445382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953017.1|2445405_2446089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953018.1|2446152_2446428_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011953019.1|2446473_2446782_+	HigA family addiction module antidote protein	NA	A0A2L1IV52	Escherichia_phage	34.6	3.6e-07
WP_011953020.1|2446782_2448012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953021.1|2448024_2448465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953022.1|2448461_2448785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953023.1|2448784_2449156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011953024.1|2449225_2449564_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_011953025.1|2449643_2451710_-|protease	Clp protease ClpP	protease	B7SYD7	Stenotrophomonas_phage	43.3	1.1e-96
WP_041379671.1|2451722_2453186_-|portal	phage portal protein	portal	B7SYD6	Stenotrophomonas_phage	36.2	2.6e-71
WP_011953027.1|2453212_2453440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081435153.1|2453421_2455530_-|terminase	phage terminase large subunit family protein	terminase	A0A2H4J898	uncultured_Caudovirales_phage	27.4	8.4e-31
>prophage 1
NC_009508	Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence	222757	12708	27570	222757	transposase	Mycobacterium_phage(25.0%)	11	NA	NA
WP_011950708.1|12708_13521_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011950763.1|13642_14464_+|transposase	IS5 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	28.7	1.6e-06
WP_011950708.1|14784_15597_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_158305182.1|16151_16928_+	FCD domain-containing protein	NA	NA	NA	NA	NA
WP_011950841.1|17010_17895_+	2,2',3-trihydroxybiphenyl dioxygenase	NA	NA	NA	NA	NA
WP_011950396.1|18797_20171_-|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
WP_086014484.1|21497_22669_-|transposase	IS3-like element ISSpwi1 family transposase	transposase	S5WIU1	Leptospira_phage	38.0	1.7e-36
WP_011950834.1|23462_24674_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	48.0	3.0e-97
WP_011950833.1|24702_24948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011950832.1|25041_26328_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	33.3	1.5e-38
WP_041380262.1|27186_27570_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_009508	Sphingomonas wittichii RW1 plasmid pSWIT02, complete sequence	222757	95974	151177	222757	transposase,integrase	Paenibacillus_phage(33.33%)	44	106070:106085	147275:147290
WP_011950768.1|95974_97468_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_007686288.1|97464_98232_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	39.2	2.9e-42
WP_041380290.1|98304_98568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148219021.1|98905_99760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158305187.1|99897_101979_+	family 16 glycosylhydrolase	NA	NA	NA	NA	NA
WP_011950763.1|102430_103252_+|transposase	IS5 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	28.7	1.6e-06
WP_081435222.1|103253_104537_+	carbamoyltransferase	NA	E3SK81	Synechococcus_phage	30.2	4.5e-27
WP_011950761.1|104869_107515_+	AAA family ATPase	NA	NA	NA	NA	NA
106070:106085	attL	CTGGCTGATGGCGCAG	NA	NA	NA	NA
WP_041380291.1|107622_108162_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	B3FJI5	Pseudomonas_phage	47.0	8.7e-25
WP_011950759.1|108443_109355_-	Abi family protein	NA	A0A059NT88	Lactococcus_phage	27.5	4.7e-15
WP_041380293.1|109546_110656_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_011950757.1|110652_113298_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_011950755.1|114315_115146_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_041380295.1|115399_116158_-	DNA transfer protein	NA	NA	NA	NA	NA
WP_041380357.1|116345_118316_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_011950752.1|118323_119328_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA	NA
WP_011950751.1|119331_120549_-	type IV secretion system protein VirB10	NA	NA	NA	NA	NA
WP_011950750.1|120554_121412_-	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
WP_011950749.1|121408_122098_-	conjugal transfer protein TraJ	NA	NA	NA	NA	NA
WP_011950748.1|122432_123377_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_041380297.1|123391_123610_-	EexN family lipoprotein	NA	NA	NA	NA	NA
WP_011950747.1|123606_124323_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_011950746.1|124327_126745_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_011950745.1|126737_127073_-	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_011950744.1|127083_127425_-	TrbC/VirB2 family protein	NA	NA	NA	NA	NA
WP_011950743.1|127421_128096_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_081435223.1|128092_128455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041380358.1|128697_129456_-	autoinducer binding domain-containing protein	NA	NA	NA	NA	NA
WP_011950741.1|129718_130285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086014485.1|132215_132973_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	40.4	2.0e-22
WP_167535078.1|133172_134675_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011950737.1|134766_135651_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011950736.1|135735_136938_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_011950735.1|136942_137713_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_011950733.1|138413_139124_-	CoA transferase subunit A	NA	NA	NA	NA	NA
WP_148219016.1|140066_142490_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011950729.1|142569_143028_+	N-acyl-L-homoserine lactone synthetase-like protein	NA	NA	NA	NA	NA
WP_049771342.1|143834_145175_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	44.4	1.2e-86
WP_086014486.1|145948_146705_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	38.0	1.0e-10
WP_011950725.1|146867_147692_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
147275:147290	attR	CTGGCTGATGGCGCAG	NA	NA	NA	NA
WP_011950724.1|147748_148486_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_011950723.1|148478_149234_+	aldolase	NA	NA	NA	NA	NA
WP_011950722.1|149245_150268_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_086014486.1|150419_151177_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	38.0	1.0e-10
