The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009441	Flavobacterium johnsoniae UW101, complete sequence	6096872	345025	356253	6096872		Sphingomonas_phage(22.22%)	10	NA	NA
WP_012022431.1|345025_346294_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.2	2.9e-10
WP_012022432.1|346381_347509_-	glycosyltransferase family 4 protein	NA	B6EFC4	Stygiolobus_rod-shaped_virus	25.4	1.1e-05
WP_012022433.1|347562_348429_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_044047400.1|348575_350543_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	32.1	1.6e-28
WP_012022435.1|350689_351625_-	GDP-L-fucose synthase	NA	M1HKX0	Paramecium_bursaria_Chlorella_virus	61.4	3.9e-105
WP_012022436.1|351643_352756_-	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	64.5	5.1e-128
WP_012022437.1|352790_353666_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	H9NC64	Sphingomonas_phage	62.0	9.6e-98
WP_012022438.1|353698_354544_-	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	28.9	1.2e-12
WP_012022439.1|354543_355092_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	48.6	4.8e-39
WP_012022440.1|355119_356253_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	26.2	8.8e-19
>prophage 2
NC_009441	Flavobacterium johnsoniae UW101, complete sequence	6096872	819450	829608	6096872		Bacillus_virus(25.0%)	13	NA	NA
WP_012022831.1|819450_820023_+	guanylate kinase	NA	A0A1W6JK60	Lactococcus_phage	34.3	1.1e-12
WP_012022832.1|820081_820447_+	four helix bundle protein	NA	NA	NA	NA	NA
WP_012022833.1|820473_821055_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_012022834.1|821338_822808_-	nicotinate phosphoribosyltransferase	NA	A0A218KC49	Bacillus_phage	56.7	2.2e-155
WP_012022835.1|822816_823755_-	ADP-ribosylglycohydrolase family protein	NA	G3M9X5	Bacillus_virus	29.9	3.5e-29
WP_012022836.1|823756_824488_-	serine/threonine protein phosphatase	NA	S0A0Y6	Cellulophaga_phage	34.8	1.5e-40
WP_012022837.1|824484_825033_-	RNA 2'-phosphotransferase	NA	A0A2R2ZGT8	Clostridioides_phage	53.6	2.0e-53
WP_012022838.1|825045_825516_-	macro domain-containing protein	NA	A0A2L1IVW3	Streptomyces_phage	43.0	2.5e-28
WP_012022839.1|825653_826181_-	NADAR family protein	NA	A0A1S6UAJ7	Serratia_phage	49.4	1.1e-37
WP_012022840.1|826189_827272_-	adenylosuccinate synthetase	NA	NA	NA	NA	NA
WP_012022841.1|827433_828309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012022842.1|828311_828647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012022843.1|828789_829608_-	TIGR02452 family protein	NA	G3MBH6	Bacillus_virus	42.2	3.3e-52
>prophage 3
NC_009441	Flavobacterium johnsoniae UW101, complete sequence	6096872	3131193	3186887	6096872	transposase,integrase	unidentified_phage(11.11%)	42	3162366:3162380	3189456:3189470
WP_012024699.1|3131193_3132453_+|integrase	site-specific integrase	integrase	H7BUI8	unidentified_phage	28.6	5.2e-12
WP_012024700.1|3132449_3133199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012024701.1|3133312_3133645_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012024702.1|3133951_3135073_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	35.4	9.0e-32
WP_012024703.1|3135091_3136204_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	30.7	6.0e-20
WP_159436649.1|3136791_3136929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123875696.1|3136986_3137214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012024704.1|3137497_3137689_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	50.0	5.2e-09
WP_044047725.1|3137983_3138271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047727.1|3138796_3139078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012024705.1|3139564_3142030_-	S8 family peptidase	NA	NA	NA	NA	NA
WP_012024706.1|3142035_3143034_-	ATP-binding protein	NA	A0A2P1ELH2	Moumouvirus	27.0	5.2e-07
WP_012024708.1|3145110_3146115_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	48.1	5.7e-70
WP_012024709.1|3146253_3146700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012024710.1|3146712_3148293_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012024711.1|3148511_3149081_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_012024712.1|3149472_3150426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_073099556.1|3150763_3151213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047733.1|3151203_3151665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044048314.1|3152654_3153104_+	response regulator	NA	NA	NA	NA	NA
WP_012024716.1|3153175_3153430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047735.1|3155130_3155340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044047736.1|3155783_3156542_-	SDR family oxidoreductase	NA	A0A2P0VP75	Tetraselmis_virus	29.8	2.5e-09
WP_044048315.1|3156772_3158956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012024720.1|3159558_3160725_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_012024721.1|3160904_3161198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012024722.1|3161610_3162264_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
3162366:3162380	attL	TTCAGATTAGGTGTT	NA	NA	NA	NA
WP_012024723.1|3163105_3164272_+	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA	NA
WP_012024724.1|3164274_3165234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012024725.1|3165263_3166364_+	catalase family protein	NA	NA	NA	NA	NA
WP_012024726.1|3166460_3166685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159436648.1|3166977_3167133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012024727.1|3167403_3167973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047738.1|3169450_3171112_+	T9SS type A sorting domain-containing protein	NA	NA	NA	NA	NA
WP_012024729.1|3171115_3174574_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_123875774.1|3179850_3180222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012024732.1|3180724_3181369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123875775.1|3181783_3182308_+|integrase	tyrosine-type recombinase/integrase	integrase	R9ZX86	Cellulophaga_phage	40.3	1.8e-19
WP_012024734.1|3182733_3183297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012024735.1|3183301_3184981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012024736.1|3185091_3186009_+|integrase	tyrosine-type recombinase/integrase	integrase	S5M9V8	Brevibacillus_phage	26.4	6.2e-15
WP_081432672.1|3186020_3186887_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
3189456:3189470	attR	TTCAGATTAGGTGTT	NA	NA	NA	NA
>prophage 4
NC_009441	Flavobacterium johnsoniae UW101, complete sequence	6096872	4286592	4336082	6096872	transposase,integrase	Brevibacillus_phage(50.0%)	55	4283576:4283590	4340951:4340965
4283576:4283590	attL	TTTCAATAATCTTTC	NA	NA	NA	NA
WP_012025573.1|4286592_4287852_-|integrase	site-specific integrase	integrase	H7BUI8	unidentified_phage	29.3	1.2e-13
WP_012025574.1|4287848_4288403_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012025575.1|4288638_4289595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025576.1|4290791_4292000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025577.1|4292048_4293203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025578.1|4293363_4294359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025579.1|4294714_4295689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025580.1|4295952_4296744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123875704.1|4297022_4297973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025582.1|4298031_4298565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081432675.1|4298723_4299581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123875705.1|4300118_4300643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025585.1|4300635_4301142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025586.1|4301347_4302490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159436635.1|4302593_4302755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025587.1|4302869_4304042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123875706.1|4304310_4306056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025589.1|4306713_4306998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052295199.1|4308217_4308565_-	YbbC/YhhH family protein	NA	NA	NA	NA	NA
WP_012025591.1|4308581_4309274_-	DUF4329 domain-containing protein	NA	NA	NA	NA	NA
WP_012025592.1|4309410_4310070_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	31.7	1.0e-19
WP_044047879.1|4310276_4310825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081432676.1|4310796_4311573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025595.1|4311786_4312239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025596.1|4312235_4312748_-	SocA family protein	NA	NA	NA	NA	NA
WP_012025597.1|4312845_4313718_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012025598.1|4313728_4314646_-|integrase	tyrosine-type recombinase/integrase	integrase	S5M9V8	Brevibacillus_phage	27.3	4.5e-13
WP_012025599.1|4314814_4316485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044048375.1|4316489_4317053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025601.1|4317536_4317974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025602.1|4318193_4318874_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_012025603.1|4318912_4319230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044047888.1|4319502_4319733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025604.1|4320327_4320669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025605.1|4320724_4321285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025606.1|4321296_4321659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025607.1|4321645_4322482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025608.1|4322493_4324131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025609.1|4324304_4324712_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012025610.1|4324816_4325068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123875707.1|4325313_4326963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123869541.1|4326984_4327389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159436659.1|4327456_4327624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035621482.1|4327689_4327893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123869539.1|4328094_4328715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025614.1|4328896_4329676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025615.1|4329704_4330139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025616.1|4330164_4330761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025617.1|4330797_4331337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025618.1|4331375_4331699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025619.1|4331813_4332449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165768443.1|4333500_4333665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025621.1|4333613_4334237_-	zeta toxin family protein	NA	NA	NA	NA	NA
WP_012025622.1|4334277_4335153_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012025623.1|4335164_4336082_-|integrase	tyrosine-type recombinase/integrase	integrase	S5M9V8	Brevibacillus_phage	26.2	2.5e-11
4340951:4340965	attR	GAAAGATTATTGAAA	NA	NA	NA	NA
>prophage 5
NC_009441	Flavobacterium johnsoniae UW101, complete sequence	6096872	4364592	4396142	6096872	transposase,integrase	Brevibacillus_phage(20.0%)	36	4365850:4365864	4403614:4403628
WP_012025651.1|4364592_4365468_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012025652.1|4365479_4366397_-|integrase	tyrosine-type recombinase/integrase	integrase	S5M9V8	Brevibacillus_phage	25.9	8.4e-12
4365850:4365864	attL	TTGTTTCCTTTTCCC	NA	NA	NA	NA
WP_012025653.1|4366574_4368245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025654.1|4368249_4368813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025655.1|4369175_4369505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025656.1|4369534_4369864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047902.1|4369876_4370734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025658.1|4370907_4371324_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012025659.1|4371398_4372058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025660.1|4372087_4372399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025661.1|4372448_4373105_-	DUF4240 domain-containing protein	NA	NA	NA	NA	NA
WP_012025662.1|4373149_4373641_-	CdiI family contact-dependent growth inhibition immunity protein	NA	NA	NA	NA	NA
WP_044048383.1|4373637_4374570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025664.1|4374571_4375312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047904.1|4375834_4376224_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_012025666.1|4376211_4377456_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_012025667.1|4377530_4378226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025668.1|4378410_4380195_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012025669.1|4380198_4381395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047906.1|4381472_4381928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025671.1|4382340_4383132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025672.1|4383608_4384388_-	NERD domain-containing protein	NA	A0A2R2ZH57	Clostridioides_phage	38.3	8.7e-34
WP_044047909.1|4384605_4384920_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_012025673.1|4384961_4385525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073099585.1|4386278_4386941_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	30.6	1.4e-19
WP_012025675.1|4387195_4387783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123875769.1|4387908_4388442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081432677.1|4388449_4389292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047910.1|4389528_4389750_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012025678.1|4389855_4390227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025679.1|4390252_4390864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012025680.1|4390930_4391797_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012025681.1|4391809_4392727_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	28.5	9.6e-16
WP_012025682.1|4392838_4394518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012025683.1|4394522_4395089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044047912.1|4395566_4396142_-|integrase	tyrosine-type recombinase/integrase	integrase	R9ZX86	Cellulophaga_phage	39.3	1.7e-23
4403614:4403628	attR	TTGTTTCCTTTTCCC	NA	NA	NA	NA
