The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009439	Pseudomonas mendocina ymp, complete genome	5072807	50549	100293	5072807	tRNA,plate,holin	Synechococcus_phage(16.67%)	49	NA	NA
WP_011920402.1|50549_51494_-|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
WP_003242326.1|51546_52053_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.7	2.5e-18
WP_011920403.1|52206_53244_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011920404.1|53330_54437_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	36.9	7.7e-28
WP_011920405.1|54503_55061_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	36.6	1.3e-12
WP_011920406.1|55172_56150_-	NADPH:quinone reductase	NA	NA	NA	NA	NA
WP_011920407.1|56294_57209_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_011920408.1|57316_58138_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_041772772.1|58341_59913_-	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
WP_003242278.1|60028_60949_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_011920410.1|60992_62501_-|holin	choline-sulfatase	holin	NA	NA	NA	NA
WP_003242276.1|62615_63569_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011920411.1|63684_64587_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_011920412.1|64683_65592_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011920413.1|65801_66605_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.1	3.3e-36
WP_011920414.1|66676_67420_-	SDR family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	26.5	5.1e-07
WP_011920415.1|67575_68385_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_041772773.1|68381_69608_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_080518485.1|69722_70400_+	DUF3592 domain-containing protein	NA	NA	NA	NA	NA
WP_011920418.1|70404_71316_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011920419.1|71369_71609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003242036.1|71707_71923_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_011920420.1|71891_72869_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_011920421.1|73152_73734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003242043.1|73971_75201_-	spore maturation protein	NA	NA	NA	NA	NA
WP_003242046.1|75365_75827_-	inhibitor of vertebrate lysozyme family protein	NA	NA	NA	NA	NA
WP_003242048.1|75837_76002_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_041772774.1|76021_76222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003242052.1|76570_76972_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003242055.1|77047_77680_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011920423.1|77720_79070_-	cache domain-containing protein	NA	NA	NA	NA	NA
WP_003242058.1|79639_80740_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011920424.1|80924_81467_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003242060.1|81459_82836_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_011920425.1|82940_83843_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA	NA
WP_011920426.1|84278_85841_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_003242063.1|85895_86402_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_003242064.1|86427_87906_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_011920427.1|87912_88341_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_011920428.1|88330_89776_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_011920429.1|89768_90155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003242068.1|90185_91976_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_003242069.1|91939_92947_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_011920430.1|92958_95559_+	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	30.8	8.0e-92
WP_041772775.1|95569_97078_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_011920432.1|97125_97260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011920433.1|97280_98477_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_003242077.1|98482_98965_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_011920434.1|98961_100293_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 2
NC_009439	Pseudomonas mendocina ymp, complete genome	5072807	2624550	2631673	5072807	tRNA	uncultured_Caudovirales_phage(85.71%)	9	NA	NA
WP_003240629.1|2624550_2625219_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	83.9	4.4e-95
WP_012018703.1|2625354_2625747_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	76.7	3.0e-51
WP_012018704.1|2625747_2626107_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	63.3	2.3e-34
WP_012018705.1|2626106_2626406_+	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	64.6	3.2e-29
WP_003240638.1|2626402_2626738_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	78.4	3.0e-44
WP_012018706.1|2626734_2627730_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	77.9	1.7e-146
WP_012018707.1|2627804_2628803_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_012018708.1|2628847_2630236_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_012018709.1|2630392_2631673_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	55.1	3.9e-100
>prophage 3
NC_009439	Pseudomonas mendocina ymp, complete genome	5072807	4313864	4355421	5072807	tRNA,capsid,portal,protease,head,tail,terminase	Pseudomonas_phage(34.78%)	49	NA	NA
WP_012019787.1|4313864_4315064_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_004373463.1|4315246_4316674_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	45.6	4.2e-18
WP_012019788.1|4316677_4317769_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_004373465.1|4317818_4318169_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	52.3	7.9e-27
WP_004373467.1|4318242_4318653_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA	NA
WP_012019790.1|4319381_4320416_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_004373474.1|4320552_4320981_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA	NA
WP_012019791.1|4320991_4321954_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_012019792.1|4321950_4323213_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_012019793.1|4323313_4324270_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_012019794.1|4324279_4325068_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012019795.1|4325075_4326557_-	AAA family ATPase	NA	U5XGM6	Phormidium_phage	35.5	2.2e-70
WP_012019796.1|4326678_4327512_+	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	36.5	1.8e-32
WP_004373481.1|4327579_4328227_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_004373482.1|4328276_4328699_-	OsmC family protein	NA	NA	NA	NA	NA
WP_004373483.1|4328932_4329577_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
WP_004373484.1|4329622_4330462_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	55.9	1.9e-71
WP_012019797.1|4330458_4331505_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	57.7	1.9e-108
WP_012019798.1|4331501_4332098_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	64.7	3.5e-75
WP_012019799.1|4332451_4332961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012019800.1|4332977_4333673_+	SOS response-associated peptidase	NA	NA	NA	NA	NA
WP_012019801.1|4333680_4333947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012019802.1|4334161_4334632_-	hypothetical protein	NA	A0A0U4JX95	Pseudomonas_phage	51.0	6.2e-19
WP_012019803.1|4334628_4335075_-	hypothetical protein	NA	A0A2R3UAM8	Myoviridae_environmental_samples	59.6	8.2e-37
WP_041772973.1|4335167_4335389_+	carbon storage regulator	NA	NA	NA	NA	NA
WP_041772974.1|4335385_4335805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012019805.1|4335810_4336779_-	hypothetical protein	NA	A0A1J0GUW3	Halomonas_phage	43.0	8.0e-13
WP_012019806.1|4336778_4337297_-	hypothetical protein	NA	A0A191SAU8	Nostoc_phage	44.2	2.7e-23
WP_012019807.1|4337302_4337809_-	hypothetical protein	NA	A0A0H4ITE0	Stenotrophomonas_phage	35.5	4.6e-12
WP_012019808.1|4337798_4338371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012019809.1|4338407_4339322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012019810.1|4339321_4340938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012019811.1|4340934_4341384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049767439.1|4341386_4343105_-	hypothetical protein	NA	A0A1W6JTA3	Pseudomonas_phage	45.0	4.9e-130
WP_012019813.1|4343111_4343615_-	hypothetical protein	NA	A0A0U4IIK1	Pseudomonas_phage	44.5	2.8e-33
WP_012019814.1|4343653_4345669_-	hypothetical protein	NA	A0A0U3TH20	Pseudomonas_phage	32.4	1.1e-59
WP_012019815.1|4345668_4345818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012019816.1|4345844_4346207_-	hypothetical protein	NA	A0A0U4KLC4	Pseudomonas_phage	43.0	3.2e-15
WP_012019817.1|4346730_4347516_-	hypothetical protein	NA	A0A0U4ISK2	Pseudomonas_phage	77.8	1.0e-111
WP_012019818.1|4347539_4347986_-	hypothetical protein	NA	A0A0U4IBQ1	Pseudomonas_phage	57.7	3.3e-38
WP_012019819.1|4347989_4348577_-	hypothetical protein	NA	A0A0U4J906	Pseudomonas_phage	58.5	1.1e-52
WP_012019820.1|4348573_4349125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012019821.1|4349127_4349658_-|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_041772976.1|4349659_4349869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012019822.1|4349924_4351166_-|capsid	phage major capsid protein	capsid	C7BGH0	Burkholderia_phage	44.3	2.9e-84
WP_041772977.1|4351236_4351947_-|protease	Clp protease ClpP	protease	C7BGG9	Burkholderia_phage	53.3	1.2e-50
WP_157045663.1|4351906_4353199_-|portal	phage portal protein	portal	Q6DMU2	Streptococcus_phage	35.2	1.6e-56
WP_012019825.1|4353209_4354916_-|terminase	terminase large subunit	terminase	Q8W631	Enterobacteria_phage	36.0	1.5e-86
WP_012019826.1|4354899_4355421_-|terminase	P27 family phage terminase small subunit	terminase	NA	NA	NA	NA
