assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000016445.1_ASM1644v1	NC_009381	Yersinia pestis Pestoides F, complete sequence	1	393483-393883	1	PILER-CR	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	AGGATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG	62	1	1	393545-393595	NC_009381.1_393432-393482	NA	3	3	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA	NA|473aa|up_9|NC_009381.1_376172_377591_-	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial	NA|1486aa|up_8|NC_009381.1_377600_382058_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|308aa|up_7|NC_009381.1_382880_383804_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|779aa|up_6|NC_009381.1_384067_386404_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|242aa|up_5|NC_009381.1_387294_388020_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|192aa|up_4|NC_009381.1_388226_388802_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|up_3|NC_009381.1_388812_389403_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|118aa|up_2|NC_009381.1_389673_390027_-	PRK12497, PRK12497, YraN family protein	NA|658aa|up_1|NC_009381.1_390110_392084_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|300aa|up_0|NC_009381.1_392146_393046_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|235aa|down_0|NC_009381.1_393982_394687_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|298aa|down_1|NC_009381.1_394948_395842_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|329aa|down_2|NC_009381.1_395972_396959_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|132aa|down_3|NC_009381.1_397044_397440_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|95aa|down_4|NC_009381.1_397743_398028_-	pfam13997, YqjK, YqjK-like protein	NA|132aa|down_5|NC_009381.1_398024_398420_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_6|NC_009381.1_398422_398728_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|127aa|down_7|NC_009381.1_398882_399263_-	pfam06476, DUF1090, Protein of unknown function (DUF1090)	NA|130aa|down_8|NC_009381.1_399488_399878_-	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA	NA|233aa|down_9|NC_009381.1_399874_400573_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
GCF_000016445.1_ASM1644v1	NC_009381	Yersinia pestis Pestoides F, complete sequence	2	1592284-1592612	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	2	2	1592492-1592524|1592553-1592584	NC_009381.1_1156653-1156685|NC_009381.1_1156244-1156275	I-F:I-F:I-F	5,5,4	5	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA|16aa|down_6|NC_009381.1_1600935_1600983_+	NA|426aa|up_9|NC_009381.1_1577844_1579122_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_8|NC_009381.1_1579153_1579996_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_7|NC_009381.1_1580043_1580784_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_6|NC_009381.1_1581211_1581634_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_5|NC_009381.1_1581642_1582947_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1051aa|up_4|NC_009381.1_1583971_1587124_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|403aa|up_3|NC_009381.1_1587086_1588295_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_2|NC_009381.1_1588665_1588983_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NC_009381.1_1589416_1590526_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NC_009381.1_1590818_1592249_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NC_009381.1_1593106_1594498_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NC_009381.1_1594956_1596048_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|241aa|down_2|NC_009381.1_1597184_1597907_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_3|NC_009381.1_1597903_1598899_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|97aa|down_4|NC_009381.1_1599287_1599578_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_5|NC_009381.1_1599732_1600560_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_6|NC_009381.1_1600935_1600983_+	NA	NA|300aa|down_7|NC_009381.1_1601265_1602165_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_8|NC_009381.1_1602168_1603500_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|383aa|down_9|NC_009381.1_1603502_1604651_+	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional
GCF_000016445.1_ASM1644v1	NC_009381	Yersinia pestis Pestoides F, complete sequence	3	1718206-1718327	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CAATTGATTATATCGATTAATATTGGCATTAAG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|73aa|up_0|NC_009381.1_1717630_1717849_-,NA	NA|83aa|up_9|NC_009381.1_1710506_1710755_-	PRK07117, PRK07117, acyl carrier protein; Validated	NA|147aa|up_8|NC_009381.1_1710792_1711233_-	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|263aa|up_7|NC_009381.1_1711319_1712108_-	cd05233, SDR_c, classical (c) SDRs	NA|251aa|up_6|NC_009381.1_1712110_1712863_-	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|240aa|up_5|NC_009381.1_1712864_1713584_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|413aa|up_4|NC_009381.1_1713576_1714815_-	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|246aa|up_3|NC_009381.1_1714830_1715568_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|428aa|up_2|NC_009381.1_1715569_1716853_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|175aa|up_1|NC_009381.1_1716842_1717367_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|73aa|up_0|NC_009381.1_1717630_1717849_-	NA	NA|249aa|down_0|NC_009381.1_1718579_1719326_+	PRK06172, PRK06172, SDR family oxidoreductase	NA|806aa|down_1|NC_009381.1_1719479_1721897_+	pfam01565, FAD_binding_4, FAD binding domain	NA|110aa|down_2|NC_009381.1_1725542_1725872_+	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|93aa|down_3|NC_009381.1_1725923_1726202_-	PRK14426, PRK14426, acylphosphatase; Provisional	NA|397aa|down_4|NC_009381.1_1726295_1727486_+	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|106aa|down_5|NC_009381.1_1727546_1727864_+	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|139aa|down_6|NC_009381.1_1727972_1728389_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|227aa|down_7|NC_009381.1_1728704_1729385_+	PRK03641, PRK03641, DUF2057 family protein	NA|155aa|down_8|NC_009381.1_1729563_1730028_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|685aa|down_9|NC_009381.1_1730088_1732143_-	PRK11054, helD, DNA helicase IV; Provisional
GCF_000016445.1_ASM1644v1	NC_009381	Yersinia pestis Pestoides F, complete sequence	4	2121589-2121978	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,6,5	6	TypeI-F	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|70aa|up_9|NC_009381.1_2109326_2109536_-,NA|425aa|down_1|NC_009381.1_2124172_2125447_-,NA|372aa|down_2|NC_009381.1_2125485_2126601_-	NA|70aa|up_9|NC_009381.1_2109326_2109536_-	NA	NA|453aa|up_8|NC_009381.1_2109659_2111018_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|168aa|up_7|NC_009381.1_2111064_2111568_+	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|340aa|up_6|NC_009381.1_2111578_2112598_+	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	cas6f|185aa|up_5|NC_009381.1_2112675_2113230_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|335aa|up_4|NC_009381.1_2113240_2114245_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|up_3|NC_009381.1_2114262_2115213_-	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|449aa|up_2|NC_009381.1_2115209_2116556_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas3f|1096aa|up_1|NC_009381.1_2116964_2120252_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_0|NC_009381.1_2120248_2121229_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|415aa|down_0|NC_009381.1_2122315_2123560_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|425aa|down_1|NC_009381.1_2124172_2125447_-	NA	NA|372aa|down_2|NC_009381.1_2125485_2126601_-	NA	NA|313aa|down_3|NC_009381.1_2126723_2127662_-	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|352aa|down_4|NC_009381.1_2127688_2128744_-	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|275aa|down_5|NC_009381.1_2128890_2129715_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_6|NC_009381.1_2129715_2130591_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|429aa|down_7|NC_009381.1_2130699_2131986_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|347aa|down_8|NC_009381.1_2132257_2133298_+	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|463aa|down_9|NC_009381.1_2133314_2134703_+	PRK15414, PRK15414, phosphomannomutase
GCF_000016445.1_ASM1644v1	NC_009381	Yersinia pestis Pestoides F, complete sequence	5	3032944-3033333	4,3,4	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	3	3	3032972-3033003|3033214-3033245|3033274-3033305	NC_009381.1_1155210-1155241|NC_009381.1_1154783-1154752|NC_009381.1_1155619-1155650	I-F:I-F:I-F	6,6,5	6	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|101aa|up_8|NC_009381.1_3017720_3018023_+,NA|194aa|down_4|NC_009381.1_3044176_3044758_+,NA|84aa|down_8|NC_009381.1_3046670_3046922_-,NA|80aa|down_9|NC_009381.1_3046960_3047200_-	NA|597aa|up_9|NC_009381.1_3015865_3017656_-	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	NA|101aa|up_8|NC_009381.1_3017720_3018023_+	NA	NA|272aa|up_7|NC_009381.1_3018225_3019041_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|307aa|up_6|NC_009381.1_3019050_3019971_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|657aa|up_5|NC_009381.1_3020123_3022094_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|378aa|up_4|NC_009381.1_3022125_3023259_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|up_3|NC_009381.1_3023282_3024311_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|up_2|NC_009381.1_3024322_3025870_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|310aa|up_1|NC_009381.1_3025918_3026848_-	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|285aa|up_0|NC_009381.1_3032085_3032940_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|183aa|down_0|NC_009381.1_3033692_3034241_+	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|1993aa|down_1|NC_009381.1_3034647_3040626_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|771aa|down_2|NC_009381.1_3040733_3043046_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|82aa|down_3|NC_009381.1_3043258_3043504_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|194aa|down_4|NC_009381.1_3044176_3044758_+	NA	NA|134aa|down_5|NC_009381.1_3045025_3045427_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|134aa|down_6|NC_009381.1_3045661_3046063_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|191aa|down_7|NC_009381.1_3046074_3046647_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|84aa|down_8|NC_009381.1_3046670_3046922_-	NA	NA|80aa|down_9|NC_009381.1_3046960_3047200_-	NA
GCF_000016445.1_ASM1644v1	NC_009381	Yersinia pestis Pestoides F, complete sequence	6	4072001-4072112	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA	NA|268aa|up_9|NC_009381.1_4055494_4056298_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|443aa|up_8|NC_009381.1_4056362_4057691_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_7|NC_009381.1_4057766_4059575_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_6|NC_009381.1_4059740_4060358_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|831aa|up_5|NC_009381.1_4060579_4063072_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|458aa|up_4|NC_009381.1_4063670_4065044_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|258aa|up_3|NC_009381.1_4065210_4065984_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_2|NC_009381.1_4066152_4067157_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|388aa|up_1|NC_009381.1_4067407_4068571_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_0|NC_009381.1_4068944_4071581_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|452aa|down_0|NC_009381.1_4072322_4073677_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|90aa|down_1|NC_009381.1_4073739_4074009_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|325aa|down_2|NC_009381.1_4074131_4075106_-	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|137aa|down_3|NC_009381.1_4075105_4075516_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|893aa|down_4|NC_009381.1_4075581_4078260_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|496aa|down_5|NC_009381.1_4078284_4079772_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|151aa|down_6|NC_009381.1_4079793_4080246_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|112aa|down_7|NC_009381.1_4080777_4081113_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|447aa|down_8|NC_009381.1_4081335_4082676_-	PRK10887, glmM, phosphoglucosamine mutase; Provisional	NA|278aa|down_9|NC_009381.1_4082685_4083519_-	PRK11613, folP, dihydropteroate synthase; Provisional
