assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	1	113524-113635	1	CRISPRCasFinder	no		csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Orphan	CGAAGTCGACCGGTGGTGGTGGAGCGGCGGCCGGTGGCGGTGG	43	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|109aa|up_5|NC_009380.1_107798_108125_-,NA|75aa|up_4|NC_009380.1_108121_108346_-,NA|46aa|down_0|NC_009380.1_114861_114999_-,NA|407aa|down_5|NC_009380.1_120503_121724_-	NA|226aa|up_9|NC_009380.1_103485_104163_+	pfam02682, CT_C_D, Carboxyltransferase domain, subdomain C and D	NA|307aa|up_8|NC_009380.1_104177_105098_+	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B	NA|256aa|up_7|NC_009380.1_105081_105849_+	pfam03746, LamB_YcsF, LamB/YcsF family	NA|613aa|up_6|NC_009380.1_105873_107712_-	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins	NA|109aa|up_5|NC_009380.1_107798_108125_-	NA	NA|75aa|up_4|NC_009380.1_108121_108346_-	NA	NA|256aa|up_3|NC_009380.1_108531_109299_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|64aa|up_2|NC_009380.1_109289_109481_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|500aa|up_1|NC_009380.1_109618_111118_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|297aa|up_0|NC_009380.1_111168_112059_+	pfam06616, BsuBI_PstI_RE, BsuBI/PstI restriction endonuclease C-terminus	NA|46aa|down_0|NC_009380.1_114861_114999_-	NA	NA|488aa|down_1|NC_009380.1_115227_116691_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|330aa|down_2|NC_009380.1_116696_117686_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|392aa|down_3|NC_009380.1_117685_118861_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|132aa|down_4|NC_009380.1_119966_120362_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|407aa|down_5|NC_009380.1_120503_121724_-	NA	NA|614aa|down_6|NC_009380.1_122016_123858_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|266aa|down_7|NC_009380.1_123901_124699_+	PRK14163, PRK14163, heat shock protein GrpE; Provisional	NA|391aa|down_8|NC_009380.1_124780_125953_+	PRK14279, PRK14279, molecular chaperone DnaJ	NA|147aa|down_9|NC_009380.1_125996_126437_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	2	1116406-1118030	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Type III-D,,Type III-C,Type III-A,Type III-B	GTTGCGATCCCTCCAGGGGTGATGAGCGAC,GTTGCGATCCCTCCAGGGGTGATGAGCGAC,GTTGCGATCCCTCCAGGGGTGATGAGCGAC	30,30,30	0	0	NA	NA	?:?:?	24,24,23	24	,TypeIII-D,TypeIII-C,TypeIII-A,TypeIII-B	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|87aa|up_2|NC_009380.1_1112664_1112925_-,NA|224aa|up_1|NC_009380.1_1112988_1113660_-,NA|467aa|down_4|NC_009380.1_1124073_1125474_-	NA|85aa|up_9|NC_009380.1_1107317_1107572_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|95aa|up_8|NC_009380.1_1107568_1107853_-	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	NA|254aa|up_7|NC_009380.1_1108113_1108875_-	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]	NA|226aa|up_6|NC_009380.1_1109003_1109681_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|261aa|up_5|NC_009380.1_1109773_1110556_-	pfam14023, DUF4239, Protein of unknown function (DUF4239)	NA|68aa|up_4|NC_009380.1_1110806_1111010_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|388aa|up_3|NC_009380.1_1111233_1112397_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|87aa|up_2|NC_009380.1_1112664_1112925_-	NA	NA|224aa|up_1|NC_009380.1_1112988_1113660_-	NA	NA|896aa|up_0|NC_009380.1_1113656_1116344_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	cas2|88aa|down_0|NC_009380.1_1118119_1118383_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NC_009380.1_1118387_1119368_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|161aa|down_2|NC_009380.1_1119364_1119847_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas7|354aa|down_3|NC_009380.1_1123012_1124074_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|467aa|down_4|NC_009380.1_1124073_1125474_-	NA	cas6|231aa|down_5|NC_009380.1_1125470_1126163_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm3gr7|823aa|down_6|NC_009380.1_1126254_1128723_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx19|213aa|down_7|NC_009380.1_1128719_1129358_-	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family	csm3gr7|559aa|down_8|NC_009380.1_1129354_1131031_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csm3gr7|809aa|down_9|NC_009380.1_1131030_1133457_-	pfam03787, RAMPs, RAMP superfamily
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	3	1140288-1140523	2,3	PILER-CR,CRISPRCasFinder	no	cas7,cas6,csm3gr7,csx19,cas10	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Type III-D,Type III-A,Type III-B,Type III-C	GTTGTTGCGATCCCTCCAGGGGTGATGAGCGACCTGAGCCGCCGGT,GGTCGCTCATCACCCCTGGAGGGATCGCAAC	46,31	0	0	NA	NA	?:?	2,3	3	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|467aa|up_8|NC_009380.1_1124073_1125474_-,NA|717aa|up_1|NC_009380.1_1135114_1137265_-,NA|850aa|up_0|NC_009380.1_1137455_1140005_+,NA	cas7|354aa|up_9|NC_009380.1_1123012_1124074_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|467aa|up_8|NC_009380.1_1124073_1125474_-	NA	cas6|231aa|up_7|NC_009380.1_1125470_1126163_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm3gr7|823aa|up_6|NC_009380.1_1126254_1128723_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx19|213aa|up_5|NC_009380.1_1128719_1129358_-	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family	csm3gr7|559aa|up_4|NC_009380.1_1129354_1131031_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csm3gr7|809aa|up_3|NC_009380.1_1131030_1133457_-	pfam03787, RAMPs, RAMP superfamily	cas10|537aa|up_2|NC_009380.1_1133453_1135064_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|717aa|up_1|NC_009380.1_1135114_1137265_-	NA	NA|850aa|up_0|NC_009380.1_1137455_1140005_+	NA	NA|372aa|down_0|NC_009380.1_1140720_1141836_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|412aa|down_1|NC_009380.1_1141915_1143151_-	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|283aa|down_2|NC_009380.1_1144504_1145353_+	TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type	NA|593aa|down_3|NC_009380.1_1145797_1147576_-	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|461aa|down_4|NC_009380.1_1147559_1148942_-	TIGR01751, crotonyl_CoA_reductase, crotonyl-CoA carboxylase/reductase	NA|287aa|down_5|NC_009380.1_1148929_1149790_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|72aa|down_6|NC_009380.1_1149789_1150005_-	pfam03621, MbtH, MbtH-like protein	NA|426aa|down_7|NC_009380.1_1150010_1151288_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|598aa|down_8|NC_009380.1_1151284_1153078_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|633aa|down_9|NC_009380.1_1153074_1154973_-	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	4	1422636-1423044	4	CRISPRCasFinder	no		csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Orphan	GGCGAAGAAGACCACCGCCGCCAAG	25	1	5	1422802-1422818|1422802-1422818|1422802-1422818|1422802-1422818|1422802-1422818	NC_009380.1_258054-258038|NC_009380.1_856052-856036|NC_009380.1_1046734-1046750|NC_009380.1_1259689-1259705|NC_009380.1_3640066-3640082	NA	6	6	Orphan	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|299aa|up_8|NC_009380.1_1412858_1413755_-,NA|159aa|up_5|NC_009380.1_1415837_1416314_+,NA|66aa|down_2|NC_009380.1_1426349_1426547_-	NA|233aa|up_9|NC_009380.1_1412027_1412726_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|299aa|up_8|NC_009380.1_1412858_1413755_-	NA	NA|202aa|up_7|NC_009380.1_1413946_1414552_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|389aa|up_6|NC_009380.1_1414551_1415718_+	PRK07588, PRK07588, FAD-binding domain	NA|159aa|up_5|NC_009380.1_1415837_1416314_+	NA	NA|440aa|up_4|NC_009380.1_1416532_1417852_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|268aa|up_3|NC_009380.1_1418017_1418821_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|229aa|up_2|NC_009380.1_1419473_1420160_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|482aa|up_1|NC_009380.1_1420209_1421655_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|196aa|up_0|NC_009380.1_1421668_1422256_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|290aa|down_0|NC_009380.1_1423139_1424009_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|761aa|down_1|NC_009380.1_1424013_1426296_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|66aa|down_2|NC_009380.1_1426349_1426547_-	NA	NA|215aa|down_3|NC_009380.1_1426557_1427202_-	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|242aa|down_4|NC_009380.1_1427338_1428064_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|333aa|down_5|NC_009380.1_1428060_1429059_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|372aa|down_6|NC_009380.1_1429063_1430179_+	PRK07582, PRK07582, cystathionine gamma-lyase; Validated	NA|331aa|down_7|NC_009380.1_1430285_1431278_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|67aa|down_8|NC_009380.1_1431360_1431561_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|282aa|down_9|NC_009380.1_1431565_1432411_-	pfam13560, HTH_31, Helix-turn-helix domain
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	5	1493384-1493475	5	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Unclear	CCGCCTGCGCCGCAGCCTGGTTTCGG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|312aa|up_6|NC_009380.1_1484857_1485793_+,NA|178aa|down_3|NC_009380.1_1498502_1499036_+,NA|181aa|down_7|NC_009380.1_1504195_1504738_+,NA|54aa|down_8|NC_009380.1_1504828_1504990_-	NA|445aa|up_9|NC_009380.1_1481416_1482751_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|507aa|up_8|NC_009380.1_1482747_1484268_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|119aa|up_7|NC_009380.1_1484283_1484640_-	PRK12497, PRK12497, YraN family protein	NA|312aa|up_6|NC_009380.1_1484857_1485793_+	NA	NA|296aa|up_5|NC_009380.1_1486251_1487139_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|276aa|up_4|NC_009380.1_1487228_1488056_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|252aa|up_3|NC_009380.1_1488220_1488976_+	PRK00358, pyrH, uridylate kinase; Provisional	NA|186aa|up_2|NC_009380.1_1489044_1489602_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|445aa|up_1|NC_009380.1_1489907_1491242_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|373aa|up_0|NC_009380.1_1491370_1492489_+	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional	NA|89aa|down_0|NC_009380.1_1493893_1494160_-	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|530aa|down_1|NC_009380.1_1494359_1495949_+	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|532aa|down_2|NC_009380.1_1495976_1497572_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|178aa|down_3|NC_009380.1_1498502_1499036_+	NA	NA|164aa|down_4|NC_009380.1_1500001_1500493_+	pfam14137, DUF4304, Domain of unknown function (DUF4304)	NA|106aa|down_5|NC_009380.1_1502345_1502663_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|144aa|down_6|NC_009380.1_1503333_1503765_+	pfam15633, Tox-ART-HYD1, HYD1 signature containing ADP-ribosyltransferase	NA|181aa|down_7|NC_009380.1_1504195_1504738_+	NA	NA|54aa|down_8|NC_009380.1_1504828_1504990_-	NA	NA|69aa|down_9|NC_009380.1_1505127_1505334_-	pfam06902, Fer4_19, Divergent 4Fe-4S mono-cluster
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	6	2237971-2238483	6,3	CRISPRCasFinder,PILER-CR	no		csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Orphan	GCACCCCCACGTGCGTGGGGAGGAC,GGAGCACCCCCACGTGCGTGGGGAGGAC	25,28	2	2	2238301-2238333|2238362-2238394	NC_009380.1_74099-74131|NC_009380.1_74099-74131	I-B,III-A,III-B:I-B,III-A,III-B	8,7	8	Orphan	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|80aa|up_8|NC_009380.1_2230609_2230849_+,NA|211aa|up_7|NC_009380.1_2230857_2231490_-,NA|158aa|up_6|NC_009380.1_2231676_2232150_-,NA|114aa|up_5|NC_009380.1_2232753_2233095_-,NA|214aa|up_1|NC_009380.1_2236695_2237337_+,NA|64aa|up_0|NC_009380.1_2237767_2237959_-,NA|60aa|down_0|NC_009380.1_2239031_2239211_-,NA|126aa|down_3|NC_009380.1_2241883_2242261_+,NA|214aa|down_4|NC_009380.1_2242424_2243066_+,NA|195aa|down_5|NC_009380.1_2243774_2244359_-	NA|402aa|up_9|NC_009380.1_2228409_2229615_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|80aa|up_8|NC_009380.1_2230609_2230849_+	NA	NA|211aa|up_7|NC_009380.1_2230857_2231490_-	NA	NA|158aa|up_6|NC_009380.1_2231676_2232150_-	NA	NA|114aa|up_5|NC_009380.1_2232753_2233095_-	NA	NA|359aa|up_4|NC_009380.1_2233183_2234260_-	cd01148, TroA_a, Metal binding protein TroA_a	NA|278aa|up_3|NC_009380.1_2234256_2235090_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|345aa|up_2|NC_009380.1_2235086_2236121_-	pfam01032, FecCD, FecCD transport family	NA|214aa|up_1|NC_009380.1_2236695_2237337_+	NA	NA|64aa|up_0|NC_009380.1_2237767_2237959_-	NA	NA|60aa|down_0|NC_009380.1_2239031_2239211_-	NA	NA|126aa|down_1|NC_009380.1_2239342_2239720_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|206aa|down_2|NC_009380.1_2240489_2241107_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|126aa|down_3|NC_009380.1_2241883_2242261_+	NA	NA|214aa|down_4|NC_009380.1_2242424_2243066_+	NA	NA|195aa|down_5|NC_009380.1_2243774_2244359_-	NA	NA|555aa|down_6|NC_009380.1_2245213_2246878_-	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]	NA|111aa|down_7|NC_009380.1_2248067_2248400_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|100aa|down_8|NC_009380.1_2250528_2250828_-	pfam12879, SICA_C, SICA C-terminal inner membrane domain	NA|288aa|down_9|NC_009380.1_2251478_2252342_-	pfam13814, Replic_Relax, Replication-relaxation
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	7	3901910-3902026	7	CRISPRCasFinder	no	csa3	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Type I-A	GTCGCTGTAGATGCCGCCGCCGTCGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|141aa|up_4|NC_009380.1_3896171_3896594_+,NA|346aa|down_1|NC_009380.1_3904717_3905755_-,NA|90aa|down_2|NC_009380.1_3905754_3906024_-,NA|455aa|down_7|NC_009380.1_3910859_3912224_+,NA|462aa|down_8|NC_009380.1_3912498_3913884_-	NA|306aa|up_9|NC_009380.1_3889369_3890287_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NC_009380.1_3890598_3891669_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|121aa|up_7|NC_009380.1_3891745_3892108_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|183aa|up_6|NC_009380.1_3892651_3893200_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|901aa|up_5|NC_009380.1_3893311_3896014_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|141aa|up_4|NC_009380.1_3896171_3896594_+	NA	NA|395aa|up_3|NC_009380.1_3896590_3897775_+	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|390aa|up_2|NC_009380.1_3897787_3898957_+	COG3268, COG3268, Uncharacterized conserved protein [Function unknown]	NA|428aa|up_1|NC_009380.1_3899052_3900336_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|334aa|up_0|NC_009380.1_3900635_3901637_+	cd08244, MDR_enoyl_red, Possible enoyl reductase	NA|382aa|down_0|NC_009380.1_3903391_3904537_+	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation	NA|346aa|down_1|NC_009380.1_3904717_3905755_-	NA	NA|90aa|down_2|NC_009380.1_3905754_3906024_-	NA	NA|340aa|down_3|NC_009380.1_3906310_3907330_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|197aa|down_4|NC_009380.1_3907410_3908001_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|291aa|down_5|NC_009380.1_3908166_3909039_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|480aa|down_6|NC_009380.1_3909242_3910682_+	PHA02584, 34, long tail fiber, proximal subunit; Provisional	NA|455aa|down_7|NC_009380.1_3910859_3912224_+	NA	NA|462aa|down_8|NC_009380.1_3912498_3913884_-	NA	NA|129aa|down_9|NC_009380.1_3914158_3914545_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	8	3902168-3902272	8	CRISPRCasFinder	no	csa3	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Type I-A	GTCGCTGTAGATGCCGCCGCCGTCGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|141aa|up_4|NC_009380.1_3896171_3896594_+,NA|346aa|down_1|NC_009380.1_3904717_3905755_-,NA|90aa|down_2|NC_009380.1_3905754_3906024_-,NA|455aa|down_7|NC_009380.1_3910859_3912224_+,NA|462aa|down_8|NC_009380.1_3912498_3913884_-	NA|306aa|up_9|NC_009380.1_3889369_3890287_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NC_009380.1_3890598_3891669_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|121aa|up_7|NC_009380.1_3891745_3892108_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|183aa|up_6|NC_009380.1_3892651_3893200_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|901aa|up_5|NC_009380.1_3893311_3896014_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|141aa|up_4|NC_009380.1_3896171_3896594_+	NA	NA|395aa|up_3|NC_009380.1_3896590_3897775_+	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|390aa|up_2|NC_009380.1_3897787_3898957_+	COG3268, COG3268, Uncharacterized conserved protein [Function unknown]	NA|428aa|up_1|NC_009380.1_3899052_3900336_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|334aa|up_0|NC_009380.1_3900635_3901637_+	cd08244, MDR_enoyl_red, Possible enoyl reductase	NA|382aa|down_0|NC_009380.1_3903391_3904537_+	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation	NA|346aa|down_1|NC_009380.1_3904717_3905755_-	NA	NA|90aa|down_2|NC_009380.1_3905754_3906024_-	NA	NA|340aa|down_3|NC_009380.1_3906310_3907330_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|197aa|down_4|NC_009380.1_3907410_3908001_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|291aa|down_5|NC_009380.1_3908166_3909039_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|480aa|down_6|NC_009380.1_3909242_3910682_+	PHA02584, 34, long tail fiber, proximal subunit; Provisional	NA|455aa|down_7|NC_009380.1_3910859_3912224_+	NA	NA|462aa|down_8|NC_009380.1_3912498_3913884_-	NA	NA|129aa|down_9|NC_009380.1_3914158_3914545_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	9	3902399-3902592	9	CRISPRCasFinder	no	csa3	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Type I-A	GTCGCTGTAGATGCCGCCGCCGTCGC	26	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|141aa|up_4|NC_009380.1_3896171_3896594_+,NA|346aa|down_1|NC_009380.1_3904717_3905755_-,NA|90aa|down_2|NC_009380.1_3905754_3906024_-,NA|455aa|down_7|NC_009380.1_3910859_3912224_+,NA|462aa|down_8|NC_009380.1_3912498_3913884_-	NA|306aa|up_9|NC_009380.1_3889369_3890287_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NC_009380.1_3890598_3891669_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|121aa|up_7|NC_009380.1_3891745_3892108_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|183aa|up_6|NC_009380.1_3892651_3893200_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|901aa|up_5|NC_009380.1_3893311_3896014_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|141aa|up_4|NC_009380.1_3896171_3896594_+	NA	NA|395aa|up_3|NC_009380.1_3896590_3897775_+	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|390aa|up_2|NC_009380.1_3897787_3898957_+	COG3268, COG3268, Uncharacterized conserved protein [Function unknown]	NA|428aa|up_1|NC_009380.1_3899052_3900336_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|334aa|up_0|NC_009380.1_3900635_3901637_+	cd08244, MDR_enoyl_red, Possible enoyl reductase	NA|382aa|down_0|NC_009380.1_3903391_3904537_+	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation	NA|346aa|down_1|NC_009380.1_3904717_3905755_-	NA	NA|90aa|down_2|NC_009380.1_3905754_3906024_-	NA	NA|340aa|down_3|NC_009380.1_3906310_3907330_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|197aa|down_4|NC_009380.1_3907410_3908001_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|291aa|down_5|NC_009380.1_3908166_3909039_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|480aa|down_6|NC_009380.1_3909242_3910682_+	PHA02584, 34, long tail fiber, proximal subunit; Provisional	NA|455aa|down_7|NC_009380.1_3910859_3912224_+	NA	NA|462aa|down_8|NC_009380.1_3912498_3913884_-	NA	NA|129aa|down_9|NC_009380.1_3914158_3914545_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_000016425.1_ASM1642v1	NC_009380	Salinispora tropica CNB-440, complete sequence	10	4542508-4542614	10	CRISPRCasFinder	no		csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	Orphan	CCGATCTCGTTGAAGATGCCGCCGCC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas6,csm3gr7,csx19,cas10,WYL,DEDDh,RT	NA|127aa|up_3|NC_009380.1_4539162_4539543_+,NA|444aa|up_2|NC_009380.1_4539630_4540962_-,NA|167aa|up_0|NC_009380.1_4541831_4542332_-,NA|71aa|down_1|NC_009380.1_4546216_4546429_+,NA|96aa|down_2|NC_009380.1_4546541_4546829_-,NA|195aa|down_7|NC_009380.1_4550549_4551134_+,NA|168aa|down_8|NC_009380.1_4551539_4552043_+,NA|380aa|down_9|NC_009380.1_4552044_4553184_-	NA|206aa|up_9|NC_009380.1_4531681_4532299_+	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family	NA|543aa|up_8|NC_009380.1_4532311_4533940_-	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional	NA|479aa|up_7|NC_009380.1_4534213_4535650_+	pfam13229, Beta_helix, Right handed beta helix region	NA|165aa|up_6|NC_009380.1_4535766_4536261_+	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism]	NA|391aa|up_5|NC_009380.1_4536349_4537522_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|364aa|up_4|NC_009380.1_4537580_4538672_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|127aa|up_3|NC_009380.1_4539162_4539543_+	NA	NA|444aa|up_2|NC_009380.1_4539630_4540962_-	NA	NA|185aa|up_1|NC_009380.1_4541273_4541828_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|167aa|up_0|NC_009380.1_4541831_4542332_-	NA	NA|458aa|down_0|NC_009380.1_4544496_4545870_+	pfam13229, Beta_helix, Right handed beta helix region	NA|71aa|down_1|NC_009380.1_4546216_4546429_+	NA	NA|96aa|down_2|NC_009380.1_4546541_4546829_-	NA	NA|226aa|down_3|NC_009380.1_4546825_4547503_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|278aa|down_4|NC_009380.1_4547644_4548478_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|339aa|down_5|NC_009380.1_4548604_4549621_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|116aa|down_6|NC_009380.1_4549747_4550095_+	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|195aa|down_7|NC_009380.1_4550549_4551134_+	NA	NA|168aa|down_8|NC_009380.1_4551539_4552043_+	NA	NA|380aa|down_9|NC_009380.1_4552044_4553184_-	NA
