The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011989	Agrobacterium vitis S4 chromosome 1, complete sequence	3726375	560423	595966	3726375	transposase,integrase	Stx2-converting_phage(50.0%)	35	566499:566513	570389:570403
WP_015914890.1|560423_561521_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_015917605.1|561679_562024_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_015914891.1|562781_563984_+	SIR2 family protein	NA	NA	NA	NA	NA
WP_015914892.1|563970_566100_+	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_041696167.1|566101_567139_+	hypothetical protein	NA	NA	NA	NA	NA
566499:566513	attL	GCGACATCGTTTGCC	NA	NA	NA	NA
WP_015914893.1|567359_567950_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015914894.1|568070_568496_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_015914895.1|568574_568970_+	VOC family protein	NA	NA	NA	NA	NA
WP_015914896.1|569267_569900_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WF93	Clostridium_phage	27.9	6.6e-08
WP_015914897.1|570316_570907_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
570389:570403	attR	GCGACATCGTTTGCC	NA	NA	NA	NA
WP_015914898.1|570926_571211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_187152370.1|572038_572386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696171.1|572390_573230_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_015914901.1|573251_573578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015914902.1|573583_574129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015914903.1|574297_575197_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	1.7e-20
WP_041696175.1|576186_576819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015914905.1|576892_577795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015914906.1|577837_578497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015914907.1|578894_580172_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_015914908.1|580496_581183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696179.1|581317_581566_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015914909.1|581651_581999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015914910.1|581995_583660_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_041696181.1|583656_583989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015914911.1|584242_587560_+	Ti-type conjugative transfer relaxase TraA	NA	NA	NA	NA	NA
WP_015914912.1|587843_589361_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015914913.1|589350_590145_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	34.5	5.9e-30
WP_015914914.1|590873_591326_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_012650519.1|591322_591676_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	57.8	7.4e-33
WP_015914915.1|591721_593380_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	39.9	1.5e-96
WP_012650518.1|593360_593594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696188.1|593624_593933_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_015914916.1|593929_594283_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_015914917.1|594352_595966_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	41.0	1.4e-91
>prophage 2
NC_011989	Agrobacterium vitis S4 chromosome 1, complete sequence	3726375	733304	740403	3726375	portal,tail,terminase,protease,head,capsid	Pseudomonas_phage(50.0%)	12	NA	NA
WP_015915030.1|733304_734531_+|portal	phage portal protein	portal	M1PLL1	Streptococcus_phage	33.2	2.3e-41
WP_041696241.1|734520_734925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915031.1|734924_735476_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2D1GNL2	Pseudomonas_phage	43.1	1.3e-23
WP_139192424.1|735615_736689_+|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	42.4	2.2e-59
WP_015915033.1|736723_737110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915034.1|737112_737475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915035.1|737471_737960_+	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	34.4	1.5e-15
WP_015915036.1|737963_738434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915037.1|738430_738742_+|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_041697540.1|739247_739661_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_015915039.1|739657_739969_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_015915040.1|739965_740403_+|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
>prophage 3
NC_011989	Agrobacterium vitis S4 chromosome 1, complete sequence	3726375	1120419	1127582	3726375	portal,tail,protease,head,capsid	Geobacillus_phage(33.33%)	10	NA	NA
WP_015915375.1|1120419_1121622_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	37.3	6.6e-57
WP_015915376.1|1121811_1122129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915377.1|1122177_1122747_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JAI0	uncultured_Caudovirales_phage	46.7	8.0e-29
WP_015915378.1|1122758_1124021_+|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	44.1	4.0e-81
WP_015915379.1|1124125_1124695_+|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_015915380.1|1124709_1125033_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_156597767.1|1125029_1125206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915381.1|1125186_1125585_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_015915382.1|1125574_1126819_-	MFS transporter	NA	NA	NA	NA	NA
WP_015915383.1|1127171_1127582_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
>prophage 4
NC_011989	Agrobacterium vitis S4 chromosome 1, complete sequence	3726375	1600132	1633484	3726375	portal,integrase,terminase,tail,protease,head,tRNA,capsid	Rhizobium_phage(27.78%)	41	1599728:1599746	1619403:1619421
1599728:1599746	attL	GGTGAGCCGGATGCGCGAC	NA	NA	NA	NA
WP_015915807.1|1600132_1601020_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	49.2	5.0e-70
WP_041696490.1|1601072_1601900_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_015915809.1|1601927_1602749_+	inositol monophosphatase family protein	NA	NA	NA	NA	NA
WP_015915810.1|1602822_1604028_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_015915811.1|1604285_1604621_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_041696492.1|1604722_1604923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015915812.1|1604938_1605175_-	BolA family transcriptional regulator	NA	NA	NA	NA	NA
WP_015915813.1|1605213_1607451_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.8	1.3e-162
WP_085946625.1|1607816_1608410_+	DnaJ domain-containing protein	NA	Q8QNB4	Ectocarpus_siliculosus_virus	47.5	9.6e-09
WP_139192370.1|1608509_1608713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139192369.1|1608812_1609625_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015915816.1|1609646_1610378_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_187152382.1|1611038_1612052_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_049777160.1|1612076_1613144_-|integrase	tyrosine-type recombinase/integrase	integrase	G8DH71	Emiliania_huxleyi_virus	40.3	4.3e-68
WP_015915819.1|1614154_1615162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015915820.1|1615575_1616190_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JND9	Staphylococcus_phage	27.3	1.4e-07
WP_041696500.1|1616277_1616529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915821.1|1616744_1617242_+	hypothetical protein	NA	R9TQJ7	Rhizobium_phage	59.0	2.5e-42
WP_041696502.1|1617238_1617475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915822.1|1617560_1618121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915823.1|1618117_1618411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041697883.1|1618410_1619691_+	helix-turn-helix domain-containing protein	NA	A0A291AUK7	Sinorhizobium_phage	32.5	4.6e-24
1619403:1619421	attR	GGTGAGCCGGATGCGCGAC	NA	NA	NA	NA
WP_015915825.1|1619677_1620334_+	transcriptional antiterminator	NA	NA	NA	NA	NA
WP_139192368.1|1620558_1620768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015915826.1|1621002_1621470_+|terminase	P27 family phage terminase small subunit	terminase	NA	NA	NA	NA
WP_139192375.1|1621456_1623268_+|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	49.4	2.1e-147
WP_015915828.1|1623280_1624588_+|portal	phage portal protein	portal	B4UTP1	Rhizobium_phage	61.7	2.7e-128
WP_015915829.1|1624562_1625159_+|head,protease	HK97 family phage prohead protease	head,protease	B4UTP2	Rhizobium_phage	49.4	2.4e-36
WP_041696504.1|1625200_1626472_+|capsid	phage major capsid protein	capsid	B4UTP3	Rhizobium_phage	55.3	4.9e-119
WP_041696506.1|1626532_1626814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015915831.1|1626810_1627359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041696508.1|1627358_1627556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041696509.1|1627530_1627893_+|head,tail	head-tail adaptor protein	head,tail	A0A141GEW5	Brucella_phage	46.3	5.5e-23
WP_015915832.1|1627889_1628351_+	HK97 gp10 family phage protein	NA	B4UTQ0	Rhizobium_phage	33.9	3.6e-11
WP_015915833.1|1628347_1628755_+	DUF3168 domain-containing protein	NA	A0A141GEW7	Brucella_phage	40.0	1.7e-17
WP_015915834.1|1628781_1629225_+	hypothetical protein	NA	A0A2D2W2I6	Sinorhizobium_phage	31.5	2.8e-13
WP_041697891.1|1629221_1629605_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_015915835.1|1629964_1630828_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.2	2.3e-96
WP_015915836.1|1630905_1631811_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_015915837.1|1631807_1632866_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.0	4.4e-97
WP_015915838.1|1632920_1633484_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	44.5	7.2e-38
>prophage 5
NC_011989	Agrobacterium vitis S4 chromosome 1, complete sequence	3726375	1879237	1922668	3726375	portal,plate,integrase,tail,terminase,head,capsid	Rhizobium_phage(45.45%)	47	1875820:1875835	1930559:1930574
1875820:1875835	attL	ATTTCCGCTTTTGAGG	NA	NA	NA	NA
WP_015916059.1|1879237_1880278_-|integrase	tyrosine-type recombinase/integrase	integrase	F8TUV0	EBPR_podovirus	43.7	4.8e-72
WP_139192391.1|1880497_1880767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696596.1|1880892_1881738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916061.1|1882220_1885514_-	error-prone DNA polymerase	NA	Q8W6C3	Saccharomonospora_phage	25.2	5.6e-82
WP_041696599.1|1885510_1887022_-	DNA polymerase Y family protein	NA	NA	NA	NA	NA
WP_015916063.1|1886942_1887695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071204222.1|1888269_1888746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916065.1|1889610_1890024_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_015916066.1|1890440_1891022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916067.1|1891840_1892251_+	Prophage antirepressor	NA	R9TP95	Rhizobium_phage	33.9	1.1e-14
WP_139192390.1|1893533_1894172_+	hypothetical protein	NA	R9TRT9	Rhizobium_phage	46.3	6.4e-43
WP_080516976.1|1894398_1894590_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
WP_015916069.1|1894754_1895384_+|tail	phage tail protein	tail	A0A0A8IL87	Aurantimonas_phage	47.3	5.9e-41
WP_015916070.1|1895628_1896231_+	hypothetical protein	NA	R9TNC8	Rhizobium_phage	62.7	2.9e-61
WP_015916071.1|1896227_1898243_+|terminase	phage terminase large subunit family protein	terminase	A0A068CDC0	Rhizobium_phage	77.0	0.0e+00
WP_015916072.1|1898239_1899877_+|portal	phage portal protein	portal	R9TN54	Rhizobium_phage	75.3	2.4e-235
WP_041696611.1|1899876_1900143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015916073.1|1900152_1901073_+	S49 family peptidase	NA	A0A068CE01	Rhizobium_phage	66.1	4.5e-114
WP_139192389.1|1901218_1901671_+	hypothetical protein	NA	A0A068C988	Rhizobium_phage	40.0	4.6e-11
WP_015916075.1|1901674_1902037_+|head	head decoration protein	head	NA	NA	NA	NA
WP_015916076.1|1902048_1903065_+|capsid	major capsid protein	capsid	A0A0A8ILA9	Aurantimonas_phage	41.5	4.1e-68
WP_015916077.1|1903142_1903622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015916078.1|1903625_1903997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041696613.1|1903999_1904785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015916079.1|1904781_1905324_+|plate	phage baseplate assembly protein V	plate	A0A1B2LRU5	Wolbachia_phage	28.7	3.7e-07
WP_015916080.1|1905320_1905716_+	GPW/gp25 family protein	NA	NA	NA	NA	NA
WP_015916081.1|1905719_1906577_+|plate	baseplate J/gp47 family protein	plate	K4HZB7	Acidithiobacillus_phage	37.2	5.1e-35
WP_015916082.1|1906573_1907707_+	phage protein gp27	NA	NA	NA	NA	NA
WP_015916083.1|1907719_1910929_+	DUF4815 domain-containing protein	NA	K4ICQ5	Acidithiobacillus_phage	36.1	1.9e-167
WP_015916084.1|1910938_1912096_+	hypothetical protein	NA	A0A222YWB9	Escherichia_phage	34.2	3.9e-14
WP_041696617.1|1912095_1912320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015916085.1|1912416_1913679_+|tail	phage tail sheath protein	tail	A0A0A8IL59	Aurantimonas_phage	35.6	1.5e-56
WP_015916086.1|1913705_1914239_+|tail	phage major tail tube protein	tail	NA	NA	NA	NA
WP_015916087.1|1914235_1914706_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_041696618.1|1914710_1916588_+|tail	phage tail tape measure protein	tail	A0A068C997	Rhizobium_phage	35.4	4.5e-68
WP_041696620.1|1916735_1916999_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_080516977.1|1917092_1917260_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_015916089.1|1917310_1917619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041696622.1|1917615_1917888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015916090.1|1917884_1918676_+	Prophage antirepressor protein	NA	R9TP95	Rhizobium_phage	54.3	1.3e-69
WP_015916091.1|1918766_1919702_+	Rha family transcriptional regulator	NA	S5MQL6	Escherichia_phage	43.9	3.6e-18
WP_015916092.1|1919784_1920204_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_041696624.1|1920200_1920434_+|tail	tail protein X	tail	NA	NA	NA	NA
WP_015916093.1|1920433_1921447_+	hypothetical protein	NA	A0A0A8ILC1	Aurantimonas_phage	34.2	1.7e-37
WP_041696625.1|1921511_1921757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015916094.1|1921743_1922322_+	lysozyme	NA	L7TM06	Rhizobium_phage	41.2	7.4e-30
WP_041696627.1|1922323_1922668_+	ammonia monooxygenase	NA	G8GWD9	Rhodobacter_phage	65.4	6.7e-39
1930559:1930574	attR	CCTCAAAAGCGGAAAT	NA	NA	NA	NA
>prophage 6
NC_011989	Agrobacterium vitis S4 chromosome 1, complete sequence	3726375	2198036	2210995	3726375	tRNA	uncultured_Mediterranean_phage(80.0%)	12	NA	NA
WP_015916331.1|2198036_2200607_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	49.8	5.6e-61
WP_015916332.1|2200816_2201188_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.9	1.4e-10
WP_015916333.1|2201397_2202264_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_041696707.1|2202379_2204023_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	S5VY01	Leptospira_phage	29.4	5.0e-07
WP_015916335.1|2204247_2204901_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1J0MC37	Streptomyces_phage	35.5	3.0e-11
WP_015916336.1|2204897_2205668_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	32.5	6.0e-27
WP_015916337.1|2205802_2207086_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.6	2.7e-96
WP_015916338.1|2207127_2207940_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.9	3.0e-53
WP_015916339.1|2207936_2208887_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_015916340.1|2208981_2209197_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	70.5	1.0e-08
WP_015916341.1|2209391_2210108_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.2	9.7e-40
WP_041696712.1|2210113_2210995_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.0	4.9e-33
>prophage 7
NC_011989	Agrobacterium vitis S4 chromosome 1, complete sequence	3726375	2493560	2528665	3726375	tail,protease,head,capsid,transposase	Ochrobactrum_phage(40.0%)	49	NA	NA
WP_015916573.1|2493560_2495816_-	hypothetical protein	NA	A0A291AUU8	Sinorhizobium_phage	49.6	5.1e-26
WP_015916574.1|2495824_2499160_-|tail	tail fiber protein	tail	G8GWG0	Rhodobacter_phage	45.0	1.0e-280
WP_015916575.1|2499156_2499576_-	C40 family peptidase	NA	M4SRS7	Rhodobacter_phage	48.9	2.5e-27
WP_041696831.1|2499747_2500263_-	hypothetical protein	NA	A0A1B0T6D7	Thiobacimonas_phage	47.7	1.1e-32
WP_015916576.1|2500259_2500682_-	hypothetical protein	NA	A0A1B0T6E0	Thiobacimonas_phage	61.4	5.0e-36
WP_015916577.1|2500678_2504485_-|tail	phage tail length tape measure family protein	tail	V9QJ75	Rhizobium_phage	51.9	5.0e-34
WP_041696833.1|2504481_2504787_-	DUF1799 domain-containing protein	NA	G8GWF5	Rhodobacter_phage	45.7	2.1e-12
WP_041696835.1|2504837_2505290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139192274.1|2505322_2506252_-	hypothetical protein	NA	G8GWF3	Rhodobacter_phage	45.3	1.7e-73
WP_156753170.1|2506251_2506422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916581.1|2506418_2506835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916582.1|2506831_2507407_-	phage virion morphogenesis protein	NA	A0A2K9VH22	Faecalibacterium_phage	32.8	3.8e-10
WP_015916583.1|2507408_2507846_-	DUF1320 domain-containing protein	NA	A0A1B0T6F3	Thiobacimonas_phage	37.9	4.1e-17
WP_015916584.1|2507857_2508199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916585.1|2508306_2509203_-|head	Mu-like prophage major head subunit gpT family protein	head	M4SRT6	Rhodobacter_phage	53.0	2.1e-92
WP_015916586.1|2509215_2509623_-	hypothetical protein	NA	A0A1B0T6E4	Thiobacimonas_phage	54.8	1.6e-26
WP_049777203.1|2509619_2510702_-|protease	phage protease	protease	A0A219VH76	Ochrobactrum_phage	29.7	4.0e-21
WP_015916588.1|2511067_2512363_-|capsid	minor capsid protein	capsid	A0A219VH74	Ochrobactrum_phage	35.4	1.5e-54
WP_015916589.1|2512359_2513913_-	DUF935 domain-containing protein	NA	A0A1B0T6F2	Thiobacimonas_phage	44.0	1.6e-108
WP_015916590.1|2513912_2515556_-	hypothetical protein	NA	M4SRU6	Rhodobacter_phage	64.6	4.3e-200
WP_015916591.1|2515552_2516137_-	DUF3486 family protein	NA	M4SNU5	Rhodobacter_phage	47.9	6.1e-40
WP_015916592.1|2516139_2516457_-	hypothetical protein	NA	A0A219VHE1	Ochrobactrum_phage	48.5	1.3e-17
WP_015916593.1|2516437_2516821_-	DUF2730 family protein	NA	A0A219VHD8	Ochrobactrum_phage	41.2	2.9e-14
WP_041696838.1|2516817_2517036_-	TraR/DksA C4-type zinc finger protein	NA	B5TA71	Burkholderia_phage	41.8	3.9e-08
WP_080516988.1|2517025_2517286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696840.1|2517230_2517584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696842.1|2517580_2517853_-	hypothetical protein	NA	A0A219VHD7	Ochrobactrum_phage	53.4	1.3e-13
WP_156753171.1|2517852_2518029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916596.1|2518025_2518532_-	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_015916597.1|2518633_2518993_-	hypothetical protein	NA	M4SNV1	Rhodobacter_phage	42.4	1.9e-12
WP_041696845.1|2518985_2519177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041698105.1|2519179_2519410_-	hypothetical protein	NA	A0A219VHD0	Ochrobactrum_phage	47.5	1.6e-07
WP_041696847.1|2519433_2519871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156753172.1|2519870_2520041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916600.1|2520040_2520688_-	regulatory protein GemA	NA	A0A219VHC6	Ochrobactrum_phage	49.8	2.6e-44
WP_015916601.1|2520684_2520975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696849.1|2520974_2521181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696852.1|2521177_2521489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696854.1|2521485_2521920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916602.1|2521931_2522585_-	DUF3164 family protein	NA	M4STB6	Rhodobacter_phage	55.7	1.1e-61
WP_041696856.1|2522589_2522877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696860.1|2523151_2523433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916603.1|2523429_2524461_-	AAA family ATPase	NA	A0A219VHC7	Ochrobactrum_phage	52.6	2.6e-94
WP_015916604.1|2524498_2526571_-|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A219VHD4	Ochrobactrum_phage	63.4	1.6e-175
WP_041696862.1|2526567_2526771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916605.1|2526770_2527232_-	hypothetical protein	NA	A0A219VHC5	Ochrobactrum_phage	53.6	1.8e-42
WP_015916606.1|2527228_2528056_-	ParB N-terminal domain-containing protein	NA	A0A219VHB6	Ochrobactrum_phage	46.9	3.0e-53
WP_041696864.1|2528048_2528315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049777303.1|2528314_2528665_-	hypothetical protein	NA	A0A219VHC3	Ochrobactrum_phage	42.2	1.5e-17
>prophage 8
NC_011989	Agrobacterium vitis S4 chromosome 1, complete sequence	3726375	2534871	2555780	3726375	terminase,transposase	Ochrobactrum_phage(50.0%)	31	NA	NA
WP_015915598.1|2534871_2535666_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	34.9	7.0e-31
WP_015916611.1|2536850_2538404_-	DUF935 domain-containing protein	NA	A0A1B0T6F2	Thiobacimonas_phage	44.2	4.6e-111
WP_015916612.1|2538403_2539762_-|terminase	terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	60.2	1.7e-149
WP_015916613.1|2539758_2540358_-	DUF3486 family protein	NA	M4SNU5	Rhodobacter_phage	53.8	4.8e-48
WP_041696869.1|2540360_2540678_-	hypothetical protein	NA	A0A219VHE1	Ochrobactrum_phage	45.6	4.3e-16
WP_015916614.1|2540658_2541042_-	DUF2730 family protein	NA	A0A219VHD8	Ochrobactrum_phage	42.0	2.2e-14
WP_015916615.1|2541038_2541257_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA	NA
WP_080516990.1|2541246_2541504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916616.1|2541451_2541805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916617.1|2541801_2542074_-	hypothetical protein	NA	A0A219VHD7	Ochrobactrum_phage	51.3	1.0e-13
WP_156753215.1|2542073_2542250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080517022.1|2542246_2542753_-	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_049777210.1|2542853_2543255_-	hypothetical protein	NA	M4SNV1	Rhodobacter_phage	43.4	1.6e-15
WP_015916619.1|2543205_2543859_-	regulatory protein GemA	NA	M4STB3	Rhodobacter_phage	48.3	8.3e-46
WP_041696873.1|2543855_2544092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916620.1|2544103_2544757_-	DUF3164 family protein	NA	M4STB6	Rhodobacter_phage	65.2	1.1e-71
WP_041696875.1|2544761_2545043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696877.1|2545039_2545369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041696878.1|2545365_2545650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916622.1|2545646_2546690_-	AAA family ATPase	NA	A0A219VHC7	Ochrobactrum_phage	52.4	8.2e-96
WP_015916623.1|2546727_2548794_-|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A219VHD4	Ochrobactrum_phage	62.5	1.1e-176
WP_015916624.1|2548790_2549255_-	hypothetical protein	NA	A0A219VHC5	Ochrobactrum_phage	55.8	3.2e-44
WP_187152358.1|2549251_2549623_-	hypothetical protein	NA	A0A219VHB6	Ochrobactrum_phage	43.9	1.9e-15
WP_187152359.1|2549667_2550108_-	ParB/RepB/Spo0J family partition protein	NA	A0A219VHB6	Ochrobactrum_phage	66.0	2.9e-42
WP_015916625.1|2550107_2550458_-	hypothetical protein	NA	A0A219VHC3	Ochrobactrum_phage	43.1	7.4e-17
WP_139192495.1|2550710_2550959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041696880.1|2550908_2551145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015916627.1|2551298_2551637_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_139192501.1|2551772_2552465_+	helix-turn-helix domain-containing protein	NA	R9U2Q5	Rhizobium_phage	56.8	1.0e-70
WP_015916629.1|2552585_2553059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015916630.1|2553263_2555780_-	Hsp70 family protein	NA	G8DDB7	Micromonas_pusilla_virus	30.3	4.2e-29
>prophage 1
NC_011988	Agrobacterium vitis S4 chromosome 2, complete sequence	1283187	1167799	1206354	1283187	tail,portal,integrase,protease,terminase,head,capsid	Sinorhizobium_phage(29.63%)	56	1162936:1162952	1178509:1178525
1162936:1162952	attL	CCATGTCGGACATTGCT	NA	NA	NA	NA
WP_071207950.1|1167799_1168843_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A291AUF0	Sinorhizobium_phage	38.0	1.1e-52
WP_012654387.1|1168846_1169101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041698674.1|1169163_1169670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041698677.1|1169681_1170140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012654388.1|1170140_1170488_-	HNH endonuclease	NA	A0A291AUJ4	Sinorhizobium_phage	72.6	1.0e-39
WP_041698680.1|1170480_1170804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012654389.1|1170803_1171625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012654390.1|1171621_1172365_-	hypothetical protein	NA	B4UTT6	Rhizobium_phage	53.4	3.5e-48
WP_012654391.1|1172346_1172892_-	hypothetical protein	NA	A0A068C9C1	Rhizobium_phage	33.7	1.2e-16
WP_012654392.1|1172884_1174021_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	30.7	8.5e-38
WP_041698684.1|1174013_1174220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012654393.1|1174221_1174587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156753187.1|1174583_1174745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012654394.1|1174737_1175061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156753186.1|1175057_1175231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012654395.1|1175227_1175548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139192347.1|1175544_1175745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156753185.1|1175752_1175911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012654396.1|1175979_1176852_-	ParB N-terminal domain-containing protein	NA	A0A0U2C144	Paracoccus_phage	47.7	4.4e-34
WP_012654397.1|1176916_1177267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012654398.1|1177458_1178076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012654399.1|1178082_1178481_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012654400.1|1179027_1179360_-	helix-turn-helix transcriptional regulator	NA	A0A141GF24	Brucella_phage	42.4	7.7e-08
1178509:1178525	attR	CCATGTCGGACATTGCT	NA	NA	NA	NA
WP_012654401.1|1179432_1179627_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012654403.1|1180096_1180555_+	hypothetical protein	NA	A0A291AUS4	Sinorhizobium_phage	51.0	3.5e-27
WP_041698695.1|1180558_1180744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139192348.1|1180736_1180970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041698697.1|1180966_1181155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012654404.1|1181420_1183196_+	hypothetical protein	NA	A0A291AUK6	Sinorhizobium_phage	57.2	2.2e-141
WP_041698702.1|1183195_1183483_+	hypothetical protein	NA	A0A1V0EES3	Caulobacter_phage	46.6	2.8e-06
WP_071207954.1|1183475_1183769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012654406.1|1183765_1184938_+	DNA cytosine methyltransferase	NA	Q6JIG4	Burkholderia_virus	31.7	3.8e-33
WP_012654407.1|1184934_1186230_+	helix-turn-helix domain-containing protein	NA	A0A068CE61	Rhizobium_phage	33.9	1.3e-53
WP_049777372.1|1186216_1186840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_187152407.1|1187087_1187486_+	HNH endonuclease	NA	C4ML58	Xanthomonas_virus	46.8	1.1e-13
WP_012654409.1|1187622_1188264_+|terminase	P27 family phage terminase small subunit	terminase	NA	NA	NA	NA
WP_012654410.1|1188274_1190017_+|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	33.7	1.6e-80
WP_012654411.1|1190016_1191261_+|portal	phage portal protein	portal	A0A141GEV9	Brucella_phage	47.9	4.2e-91
WP_012654412.1|1191238_1192093_+|protease	Clp protease ClpP	protease	A0A141GEW1	Brucella_phage	45.2	3.5e-60
WP_139192525.1|1192243_1193518_+|capsid	phage major capsid protein	capsid	A0A141GEW2	Brucella_phage	40.5	1.6e-80
WP_012654414.1|1193570_1194008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012654415.1|1194070_1194667_+|head,tail	phage head-tail connector protein	head,tail	A0A141GEW4	Brucella_phage	39.5	2.9e-29
WP_012654416.1|1194666_1194987_+|head	phage head closure protein	head	C7BGH2	Burkholderia_phage	35.0	7.0e-06
WP_012654417.1|1194990_1195437_+	hypothetical protein	NA	A0A0U2C0P4	Paracoccus_phage	36.1	8.8e-15
WP_012654418.1|1195440_1195836_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_012654419.1|1195853_1196540_+	hypothetical protein	NA	A0A0H4INV0	Stenotrophomonas_phage	40.0	2.7e-07
WP_012654420.1|1196547_1196931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012654421.1|1196993_1197245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049777373.1|1197244_1199635_+|tail	phage tail tape measure protein	tail	I3NL90	Bifidobacterium_phage	30.1	3.3e-31
WP_012654423.1|1199634_1200354_+	hypothetical protein	NA	A0A291AUU7	Sinorhizobium_phage	45.0	3.4e-48
WP_012654424.1|1200356_1200938_+	hypothetical protein	NA	A0A291AUU9	Sinorhizobium_phage	52.3	6.2e-61
WP_041698705.1|1200934_1201348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012654426.1|1201344_1203510_+	hypothetical protein	NA	A0A291AUU6	Sinorhizobium_phage	46.8	1.0e-164
WP_041698707.1|1203560_1205477_+	hypothetical protein	NA	A0A291AUU8	Sinorhizobium_phage	45.0	4.3e-34
WP_139192505.1|1205494_1205686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012654428.1|1205745_1206354_+	hypothetical protein	NA	R9U4A9	Rhizobium_phage	45.3	3.0e-42
>prophage 1
NC_011986	Agrobacterium vitis S4 plasmid pAtS4a, complete sequence	78730	29462	38681	78730	transposase	Acidithiobacillus_phage(33.33%)	10	NA	NA
WP_012653034.1|29462_31016_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	42.4	1.6e-103
WP_012653035.1|31028_31805_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.1	1.1e-60
WP_085946666.1|32042_33273_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	66.2	6.3e-103
WP_080517094.1|33596_33902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012653038.1|33820_35170_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	24.7	2.9e-16
WP_012653039.1|35255_35540_-	copper-binding protein	NA	NA	NA	NA	NA
WP_012653040.1|35562_36042_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_012653041.1|36181_36451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012653042.1|36643_37321_+	response regulator	NA	W8CYM9	Bacillus_phage	32.7	7.6e-26
WP_012653043.1|37307_38681_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	23.2	1.9e-15
>prophage 1
NC_011984	Agrobacterium vitis S4 plasmid pAtS4c, complete sequence	211620	7499	79828	211620	integrase,transposase	uncultured_Caudovirales_phage(27.27%)	51	12849:12908	55420:56895
WP_012650478.1|7499_8633_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_041699298.1|8757_9711_+	DUF1403 family protein	NA	NA	NA	NA	NA
WP_139191523.1|10411_10687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012650483.1|11139_11832_+	DUF72 domain-containing protein	NA	D2XAQ3	Marseillevirus	26.0	9.2e-11
WP_080517069.1|12116_12749_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
12849:12908	attL	GTGTCCGTCGTCGAATGATTTGAGACTTCCTCGGCTTTGGAAGAATGGAGTTTCCGGCTC	NA	NA	NA	NA
WP_081364425.1|14325_15030_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_049777436.1|14983_15280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012650487.1|18103_18475_-	response regulator	NA	NA	NA	NA	NA
WP_139192311.1|18706_19339_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_148213982.1|21944_22205_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012650491.1|23097_24783_+	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_012650492.1|24775_25312_+	NUDIX hydrolase	NA	A0A2H4IB87	Erwinia_phage	27.9	7.6e-05
WP_041699307.1|25406_26123_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_187152414.1|26162_28283_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_012650495.1|28638_29355_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_012650496.1|29501_29999_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_012650497.1|30062_30977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071206036.1|30994_31504_-	response regulator	NA	NA	NA	NA	NA
WP_012650499.1|31974_32436_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_139192543.1|33020_34187_+	PHB depolymerase family esterase	NA	NA	NA	NA	NA
WP_012650503.1|35625_36870_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_012650504.1|36862_37198_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012650505.1|37428_39786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139191523.1|41030_41306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_187152415.1|42168_43692_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	59.0	1.3e-09
WP_012650490.1|43936_44251_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_148213984.1|44201_44717_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_012650509.1|45004_45976_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_148213984.1|46631_47147_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_012650490.1|47097_47412_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049777466.1|48888_50595_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_187152416.1|50721_52497_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.6	3.0e-13
WP_012650515.1|55854_58425_-	GAF domain-containing protein	NA	B5LWN8	Feldmannia_species_virus	29.1	2.5e-21
55420:56895	attR	GAGCCGGAAACTCCATTCTTCCAAAGCCGAGGAAGTCTCAAATCATTCGACGACGGACACCCGCTGCGTAATCATTGGAGGCTTGTTCGGAGGTGAGGCTGAAACACATGGATCCTCGCATGAGCCAAAAACCCTATCTGACCATTTCTGGTTACAATCCGGCCGCCTTGGTGAGATTGGCGCTGAAGCCATGGCGTTCCGCCACCTCTTTTACAACTACGCTCGGCCGCAGACCCTCTCACACGATACGAGCTTTGAACGAATCCGGCCATTTGCGATGCGCCGAGTGTCAAGCCGACCATCAACAAGCCGGGTCGCAAGATCTACCGGCACGATCGTTCCGCACTGGCGGCGCCAGATCGTTCGAGGGAACGGAGTGGTTCCCTTGGGCTGCGGCAGGCCAGTTAGCACCAGTGATGCGACAATCCGCCGAATTCATGCGACGGGTTTAGTGAGCACCTGTTGCACGGCGCGAGCAAGGTGATCGCGCTCGTAAGGTTTTTGGATAATGACCTCGCTCCCCTTACGCCCTGCGATCGCCAACTCATCGCCATAGCCCGTCGCGAAAATGAAAGGCGTGCCGGCTTCCCCAAGCTTCGTCGCGAGATCGAAACTCGTTCCGCGACCGACGTTGATGTCCAGCATCGCGAACTGAAAGCTATGTTTTGCGAGTAGCTGCTCAGCTTCGGTAATCGTCGAGGCGAGGGCCACGTGAACGGCGCCCAGTTCGTGCAGCATGTCCTCTGCCTCTAGCGCAATTAGCATATTGTCCTCGACCAGCAGGACATGCGTTCCTTGAAGGAGTCGGGCAGGAGTAACGTCGGTCTTCTTGGTGGCGTCATTGTTGAATGTGGTCGGAGCGGGTGTCTCGTCCTCGTCCGCGATGAAGACATAATGATGCGGGATGAAGAAATCGGCTTCAAGTCCTGCCAACAGGAAGCGGAGCTCCGCTGTGCCCTGTAGATCGAACGGGATTGTTCGTTCGACAATGACAGATCCGAAGCCGCGACGTGTCGGGGCAACCACGGCCGGGCCGCCGATTTCCTTCCACTTGATATAGACGCCTTCGCCATCGACTGCTTCGACGGTCACCTCTACACGACCTGCGGCGGAAAGCGCTCCATGCTTGCAACTGTTGGTGACGAGTTCGTGCACGACCAGTGCTACGGTGGAGATCGCCTGCGCCTGGAGCAGAACATTAGGGCCCTTCAAGCTGAGGCGGCCCCTCGCATTGTCATGTGCAGCAATTTCATCCTCGAACAGCCCGGCCAGCGGAGCAGGGCCCCAGCTCTGACGCGTAATCCTGTCATGCGCTCTCGCCAGCGCCTGTACCCGGCCACTGAGCGAGTCGACATAGCTGGTGACATCGACGGCAGCTTGGCTCGTCTTTGTCACCAGGCTGCGGATCAGAGCGAGGATGTTGCGAACGCGGTGATTGAGCTCTGCGATGAGCACCTCCTGACGTTCGGATGCACG	NA	NA	NA	NA
WP_139191369.1|58447_59308_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012650517.1|60361_62647_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.6	5.3e-15
WP_071204112.1|64084_64909_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_012650518.1|64854_65088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015914915.1|65068_66728_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	39.9	1.5e-96
WP_012650519.1|66773_67127_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	57.8	7.4e-33
WP_015914914.1|67123_67576_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_012650521.1|67959_69096_-	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	31.1	1.1e-21
WP_012650522.1|69095_69665_-	chemotaxis protein CheB	NA	NA	NA	NA	NA
WP_012650523.1|69661_70495_-	chemotaxis protein CheR	NA	NA	NA	NA	NA
WP_012650524.1|70491_73929_-	response regulator	NA	A0A1V0SGX0	Hokovirus	28.1	5.0e-33
WP_049777445.1|74211_74586_+	YsnF/AvaK domain-containing protein	NA	NA	NA	NA	NA
WP_012650526.1|74602_75058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012650527.1|75090_75744_+	DUF433 domain-containing protein	NA	NA	NA	NA	NA
WP_012650528.1|75740_76172_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_012650529.1|76206_77067_-	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_080517071.1|78645_78819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085946654.1|79067_79828_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.0	8.0e-24
>prophage 1
NC_011982	Agrobacterium vitis S4 plasmid pTiS4, complete sequence	258824	7356	81684	258824	transposase,integrase	Escherichia_phage(20.0%)	46	77706:77765	82400:83147
WP_012648915.1|7356_8493_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_012648916.1|9561_10257_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_041699446.1|10346_10670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012648919.1|11907_12624_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_139191542.1|12778_13006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012648921.1|13034_13523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041699447.1|13519_13708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012648922.1|13817_14705_+	Ku protein	NA	A0A249XRB2	Mycobacterium_phage	27.3	5.1e-14
WP_012648923.1|14708_15530_+	Ku protein	NA	NA	NA	NA	NA
WP_012648924.1|15593_18275_-	DNA ligase D	NA	A0A1X9SH33	Bradyrhizobium_phage	41.6	6.7e-25
WP_174083776.1|18617_19681_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_012648926.1|19975_20953_+	TIGR03885 family FMN-dependent LLM class oxidoreductase	NA	NA	NA	NA	NA
WP_012648927.1|21012_22674_+	alpha-amylase family protein	NA	NA	NA	NA	NA
WP_012648935.1|24041_24758_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_012648929.1|24954_26739_+	PAS domain-containing methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.1	1.9e-07
WP_012648930.1|27092_27371_-	HU family DNA-binding protein	NA	B5TA87	Burkholderia_phage	42.5	2.4e-10
WP_012648931.1|28127_28448_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162292250.1|32037_32232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012648935.1|33342_34059_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_041699461.1|34142_34763_-	BA14K family protein	NA	NA	NA	NA	NA
WP_012648937.1|35379_35595_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_012648938.1|35599_35896_-	TraC family protein	NA	NA	NA	NA	NA
WP_012648940.1|44011_44956_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	33.3	1.1e-19
WP_041699550.1|44952_45375_-	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	51.2	2.9e-28
WP_041699462.1|48130_48883_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	43.8	1.2e-40
WP_041699553.1|49975_51226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041699465.1|51394_51721_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_041699467.1|51717_52077_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_041699469.1|52836_53013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041699470.1|53230_54193_+	DUF3991 and TOPRIM domain-containing protein	NA	NA	NA	NA	NA
WP_012648950.1|54335_54938_+	DUF1419 domain-containing protein	NA	NA	NA	NA	NA
WP_174083776.1|56620_57683_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_012648953.1|61658_64496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041699472.1|64492_65242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012648955.1|65581_66406_-	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA	NA
WP_012648956.1|68594_69068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012648957.1|69064_69952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012648959.1|70698_71298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012648960.1|71613_72540_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	48.3	1.6e-74
WP_174083776.1|73594_74658_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_080517078.1|77553_77721_+	DUF736 family protein	NA	NA	NA	NA	NA
77706:77765	attL	CATCGATTATGCGTAGCGCGTGATTATGCGGAGTCTTATGGCGGCGGCCCCAGTATTCCG	NA	NA	NA	NA
WP_012648963.1|77848_78151_-	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_143050364.1|78116_78455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012648964.1|78539_79766_+|integrase	tyrosine-type recombinase/integrase	integrase	A7XX23	Thermus_virus	29.1	6.0e-13
WP_041699479.1|79759_80680_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012648966.1|80676_81684_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	29.5	9.6e-09
82400:83147	attR	CGGAATACTGGGGCCGCCGCCATAAGACTCCGCATAATCACGCGCTACGCATAATCGATGTTATGTGGTGCACCGCATAACACGGAAATAGGCGCCGCCTGGTCCAAGCAATCTAACGAGGGTCGCAATTACCTCGGTCTCAAGCTCGACGATCCGAGCTTCACCGCTCCGATCTACGCCAATCTGGTCGAGGACGAGGACGGCCAGAATTACAGCCTCATCTGGTCTCGCCCGAGCCGTCGCGGTGCCGAATAAGCCCCGGATATGACGCCCCGCACACTGCGGGGCGTCGCCAGCCTAGGCCACTCGGCAGCTTAAAACCACAGATTGACAGGTAGTTCCTCATGTGAGGCCGCGATGGACACGGCCCGAACAACCGAAAAGGATTACGACAATGGCAACCATCGGCGAATTCACCGCTTCCGGCAACGGTTTCTCCGGCACCATCAAGACCCTTAACCTCAACGTCAAGGCAACCATCCGCGCCGTCGAGCGCACTTCCGAAAAGGGCCCTGACTACCGCATCCTCGCGGGAGCCACGGATTCGGCGCAGCCTGGAAAAAGACCTCGAACGAAGGCCGCGACTACCTCTCGGTCAAGCTCGATGACCCAAGCTTCCCGGCCCCGATCTACGCAACGCTGATCGAGGTCGAAGGCGAGGAAGGCCTCTCCCTCATCTGGTCCCGGTCGAACCGGGACTAAGACTGGAGGCCCCGCCGCGAGGCGGGGCTCTCCACTACCTGGATCA	NA	NA	NA	NA
>prophage 2
NC_011982	Agrobacterium vitis S4 plasmid pTiS4, complete sequence	258824	145480	184009	258824	transposase	Stx2-converting_phage(50.0%)	33	NA	NA
WP_012649016.1|145480_146581_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_041699590.1|146743_147133_+|transposase	IS5/IS1182 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	38.4	2.6e-10
WP_158212759.1|147692_148139_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012649017.1|148204_150673_-	virA/G regulated protein	NA	NA	NA	NA	NA
WP_041699501.1|150780_152769_-	type IV secretion system ATPase VirD4	NA	NA	NA	NA	NA
WP_139191409.1|152829_155160_-	virA/G regulated protein	NA	NA	NA	NA	NA
WP_012649020.1|155515_156727_-	T-DNA border endonuclease VirD2	NA	NA	NA	NA	NA
WP_012649021.1|156753_157200_-	T-DNA border endonuclease subunit VirD1	NA	NA	NA	NA	NA
WP_012649022.1|157456_158152_+	conjugal transfer ATPase VirC1	NA	A0A0A8IL09	Aurantimonas_phage	29.9	1.6e-10
WP_041699509.1|158154_158763_+	conjugal transfer protein VirC2	NA	NA	NA	NA	NA
WP_012649024.1|158884_159610_-	response regulator	NA	NA	NA	NA	NA
WP_012649025.1|159840_160875_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA	NA
WP_012649026.1|160908_162030_-	type IV secretion system protein VirB10	NA	NA	NA	NA	NA
WP_012649027.1|162029_162908_-	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
WP_012649028.1|162904_163618_-	type IV secretion system protein VirB8	NA	NA	NA	NA	NA
WP_012649104.1|163604_163772_-	type IV secretion system lipoprotein VirB7	NA	NA	NA	NA	NA
WP_012649029.1|163799_164687_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_012649030.1|164746_165415_-	pilin minor subunit VirB5	NA	NA	NA	NA	NA
WP_012649031.1|165442_167812_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_012649032.1|167811_168138_-	type IV secretion system protein VirB3	NA	NA	NA	NA	NA
WP_012649033.1|168134_168500_-	pilin major subunit VirB2	NA	NA	NA	NA	NA
WP_012649034.1|168515_169232_-	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA	NA
WP_012649035.1|170523_170877_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_012649036.1|170938_172600_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	37.4	7.7e-72
WP_041699516.1|174076_174424_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	54.9	7.8e-27
WP_012649039.1|174420_174783_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_080517075.1|174872_175073_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012649040.1|175274_177296_-	virA/G regulated protein	NA	NA	NA	NA	NA
WP_012649041.1|177362_179033_-	type IV secretion system single-stranded DNA binding effector VirE2	NA	NA	NA	NA	NA
WP_012649042.1|179046_179238_-	type IV secretion system effector chaperone VirE1	NA	NA	NA	NA	NA
WP_041699590.1|180144_180534_-|transposase	IS5/IS1182 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	38.4	2.6e-10
WP_012649035.1|181932_182286_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_012649036.1|182347_184009_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	37.4	7.7e-72
