assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000016165.1_ASM1616v1	NC_009253	Desulfotomaculum reducens MI-1, complete genome	1	586379-587743	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	Type I-A,Type I-B, Type I-B?	GTTATCAGCCTACCTATAAGGAATTGAAAC,GTTATCAGCCTACCTATAAGGAATTGAAAC,NNNNNNNNNNGTTATCAGCCTACCTATAAGGAATTGAAAC	30,30,40	0	0	NA	NA	NA:NA:NA	20,20,20	20	TypeI-B,TypeI-A,TypeI-B?	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	NA|194aa|up_7|NC_009253.1_573772_574354_+,NA|66aa|down_4|NC_009253.1_591633_591831_+	NA|366aa|up_9|NC_009253.1_568330_569428_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|739aa|up_8|NC_009253.1_569452_571669_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|194aa|up_7|NC_009253.1_573772_574354_+	NA	NA|267aa|up_6|NC_009253.1_575896_576697_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|412aa|up_5|NC_009253.1_577858_579094_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas6|253aa|up_4|NC_009253.1_579303_580062_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas8b1|679aa|up_3|NC_009253.1_580077_582114_+	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7b|330aa|up_2|NC_009253.1_582113_583103_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|243aa|up_1|NC_009253.1_583104_583833_+	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|784aa|up_0|NC_009253.1_583829_586181_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|165aa|down_0|NC_009253.1_587836_588331_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|331aa|down_1|NC_009253.1_588349_589342_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|88aa|down_2|NC_009253.1_589366_589630_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|181aa|down_3|NC_009253.1_590920_591463_+	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|66aa|down_4|NC_009253.1_591633_591831_+	NA	NA|73aa|down_5|NC_009253.1_591880_592099_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|67aa|down_6|NC_009253.1_592245_592446_+	pfam08291, Peptidase_M15_3, Peptidase M15	NA|80aa|down_7|NC_009253.1_592708_592948_+	pfam13192, Thioredoxin_3, Thioredoxin domain	NA|87aa|down_8|NC_009253.1_592971_593232_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|319aa|down_9|NC_009253.1_593434_594391_+	COG0701, COG0701, Predicted permeases [General function prediction only]
GCF_000016165.1_ASM1616v1	NC_009253	Desulfotomaculum reducens MI-1, complete genome	2	1079904-1083390	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	 Type I-U?,Type I-C,Type I-U	GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC,GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC,GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC	32,32,32	1	10	1082924-1082961|1082924-1082961|1082924-1082961|1082924-1082961|1082924-1082961|1082924-1082961|1082924-1082961|1082924-1082961|1082924-1082961|1082924-1082961	NC_009253.1_196397-196360|NC_009253.1_572802-572765|NC_009253.1_671723-671686|NC_009253.1_839746-839709|NC_009253.1_2851123-2851086|NC_009253.1_3410181-3410144|NC_009253.1_3520134-3520097|NC_009253.1_326577-326614|NC_009253.1_1106496-1106533|NC_009253.1_1518654-1518691	I-C:I-C:I-C	52,52,52	52	TypeI-U,TypeI-C,TypeI-U?	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	NA,NA|194aa|down_2|NC_009253.1_1085974_1086556_-,NA|124aa|down_3|NC_009253.1_1088819_1089191_+	NA|2641aa|up_9|NC_009253.1_1059964_1067887_+	pfam18276, TcA_TcB_BD, Tc toxin complex TcA C-terminal TcB-binding domain	NA|716aa|up_8|NC_009253.1_1067916_1070064_+	pfam13403, Hint_2, Hint domain	NA|509aa|up_7|NC_009253.1_1070286_1071813_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	cas3|732aa|up_6|NC_009253.1_1072165_1074361_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|222aa|up_5|NC_009253.1_1074378_1075044_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|608aa|up_4|NC_009253.1_1075040_1076864_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|289aa|up_3|NC_009253.1_1076847_1077714_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|220aa|up_2|NC_009253.1_1077715_1078375_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|NC_009253.1_1078391_1079423_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_009253.1_1079443_1079734_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|267aa|down_0|NC_009253.1_1083631_1084432_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|460aa|down_1|NC_009253.1_1084431_1085811_-	pfam00665, rve, Integrase core domain	NA|194aa|down_2|NC_009253.1_1085974_1086556_-	NA	NA|124aa|down_3|NC_009253.1_1088819_1089191_+	NA	NA|284aa|down_4|NC_009253.1_1089190_1090042_+	cd04599, CBS_pair_GGDEF_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	NA|168aa|down_5|NC_009253.1_1090233_1090737_+	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only]	NA|292aa|down_6|NC_009253.1_1090783_1091659_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|388aa|down_7|NC_009253.1_1091669_1092833_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|178aa|down_8|NC_009253.1_1092834_1093368_+	PRK13947, PRK13947, shikimate kinase; Provisional	NA|360aa|down_9|NC_009253.1_1093348_1094428_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed
GCF_000016165.1_ASM1616v1	NC_009253	Desulfotomaculum reducens MI-1, complete genome	3	1086730-1086828	3	CRISPRCasFinder	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	 Type I-U?,Type I-C,Type I-U	CGTCGCCCCTCACGCAGGGGCGTGGATTGAAAC	33	0	0	NA	NA	I-C	1	1	TypeI-U,TypeI-C,TypeI-U?	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	NA|194aa|up_0|NC_009253.1_1085974_1086556_-,NA|124aa|down_0|NC_009253.1_1088819_1089191_+	cas3|732aa|up_9|NC_009253.1_1072165_1074361_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|222aa|up_8|NC_009253.1_1074378_1075044_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|608aa|up_7|NC_009253.1_1075040_1076864_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|289aa|up_6|NC_009253.1_1076847_1077714_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|220aa|up_5|NC_009253.1_1077715_1078375_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_4|NC_009253.1_1078391_1079423_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_3|NC_009253.1_1079443_1079734_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|267aa|up_2|NC_009253.1_1083631_1084432_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|460aa|up_1|NC_009253.1_1084431_1085811_-	pfam00665, rve, Integrase core domain	NA|194aa|up_0|NC_009253.1_1085974_1086556_-	NA	NA|124aa|down_0|NC_009253.1_1088819_1089191_+	NA	NA|284aa|down_1|NC_009253.1_1089190_1090042_+	cd04599, CBS_pair_GGDEF_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	NA|168aa|down_2|NC_009253.1_1090233_1090737_+	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only]	NA|292aa|down_3|NC_009253.1_1090783_1091659_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|388aa|down_4|NC_009253.1_1091669_1092833_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|178aa|down_5|NC_009253.1_1092834_1093368_+	PRK13947, PRK13947, shikimate kinase; Provisional	NA|360aa|down_6|NC_009253.1_1093348_1094428_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|555aa|down_7|NC_009253.1_1094472_1096137_+	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|402aa|down_8|NC_009253.1_1096302_1097508_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|163aa|down_9|NC_009253.1_1097545_1098034_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G
GCF_000016165.1_ASM1616v1	NC_009253	Desulfotomaculum reducens MI-1, complete genome	4	1764821-1766001	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,cas6	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	Type III-C,Type III-B,Type III-D,Type III-A	GTCAAAACACAAAATAATTCCCTTTGGGAATTGAAAC,GTCAAAACACAAAATAATTCCCTTTGGGAATTGAAAC,GTCAAAACACAAAATAATTCCCTTTGGGAATTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	15,15,15	15	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	NA|74aa|up_1|NC_009253.1_1763234_1763456_-,NA	NA|177aa|up_9|NC_009253.1_1754661_1755192_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|65aa|up_8|NC_009253.1_1755208_1755403_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|119aa|up_7|NC_009253.1_1755439_1755796_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|445aa|up_6|NC_009253.1_1755991_1757326_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|218aa|up_5|NC_009253.1_1757341_1757995_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|268aa|up_4|NC_009253.1_1757994_1758798_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|341aa|up_3|NC_009253.1_1759271_1760294_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|807aa|up_2|NC_009253.1_1760323_1762744_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|74aa|up_1|NC_009253.1_1763234_1763456_-	NA	WYL|154aa|up_0|NC_009253.1_1763558_1764020_-	pfam13280, WYL, WYL domain	NA|412aa|down_0|NC_009253.1_1766726_1767962_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas1|545aa|down_1|NC_009253.1_1768843_1770478_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|93aa|down_2|NC_009253.1_1770482_1770761_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas10|781aa|down_3|NC_009253.1_1771039_1773382_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|179aa|down_4|NC_009253.1_1773354_1773891_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|216aa|down_5|NC_009253.1_1773912_1774560_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|310aa|down_6|NC_009253.1_1774575_1775505_+	TIGR01903, Hypothetical_protein	csx1|420aa|down_7|NC_009253.1_1775509_1776769_+	cd09702, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas6|266aa|down_8|NC_009253.1_1776785_1777583_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|91aa|down_9|NC_009253.1_1777778_1778051_+	PRK14126, PRK14126, cell division protein ZapA; Provisional
GCF_000016165.1_ASM1616v1	NC_009253	Desulfotomaculum reducens MI-1, complete genome	5	1768139-1768717	4,5,4	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,cas6	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	Type III-C,Type III-B,Type III-D,Type III-A	GTCAAAACACAAAATAATTCCCTTTGGGAATTGAAAC,GTCAAAACACAAAATAATTCCCTTTGGGAATTGAAAC,GTCAAAACACAAAATAATTCCCTTTGGGAATTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	4,7,7	7	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	DinG,cas3,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas8c,cas7,RT,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,DEDDh	NA|74aa|up_2|NC_009253.1_1763234_1763456_-,NA	NA|65aa|up_9|NC_009253.1_1755208_1755403_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|119aa|up_8|NC_009253.1_1755439_1755796_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|445aa|up_7|NC_009253.1_1755991_1757326_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|218aa|up_6|NC_009253.1_1757341_1757995_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|268aa|up_5|NC_009253.1_1757994_1758798_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|341aa|up_4|NC_009253.1_1759271_1760294_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|807aa|up_3|NC_009253.1_1760323_1762744_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|74aa|up_2|NC_009253.1_1763234_1763456_-	NA	WYL|154aa|up_1|NC_009253.1_1763558_1764020_-	pfam13280, WYL, WYL domain	NA|412aa|up_0|NC_009253.1_1766726_1767962_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas1|545aa|down_0|NC_009253.1_1768843_1770478_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|93aa|down_1|NC_009253.1_1770482_1770761_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas10|781aa|down_2|NC_009253.1_1771039_1773382_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|179aa|down_3|NC_009253.1_1773354_1773891_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|216aa|down_4|NC_009253.1_1773912_1774560_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|310aa|down_5|NC_009253.1_1774575_1775505_+	TIGR01903, Hypothetical_protein	csx1|420aa|down_6|NC_009253.1_1775509_1776769_+	cd09702, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas6|266aa|down_7|NC_009253.1_1776785_1777583_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|91aa|down_8|NC_009253.1_1777778_1778051_+	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|570aa|down_9|NC_009253.1_1778178_1779888_+	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX
