assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000016065.1_ASM1606v1	NC_009092	Shewanella loihica PV-4, complete sequence	1	3246837-3246988	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,WYL,DinG,TnsE_C	Orphan	CAAATACCCAAGCAGCAAAACGCTACAACCCGAAAGCATTCCCACATTCC	50	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,WYL,DinG,TnsE_C	NA|72aa|up_9|NC_009092.1_3235588_3235804_-,NA|57aa|up_7|NC_009092.1_3237540_3237711_+,NA|253aa|up_1|NC_009092.1_3244645_3245404_-,NA|255aa|up_0|NC_009092.1_3245454_3246219_-,NA	NA|72aa|up_9|NC_009092.1_3235588_3235804_-	NA	NA|476aa|up_8|NC_009092.1_3235810_3237238_+	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA|57aa|up_7|NC_009092.1_3237540_3237711_+	NA	NA|178aa|up_6|NC_009092.1_3237799_3238333_-	pfam07437, YfaZ, YfaZ precursor	NA|163aa|up_5|NC_009092.1_3238631_3239120_+	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|607aa|up_4|NC_009092.1_3240012_3241833_-	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain	NA|294aa|up_3|NC_009092.1_3242066_3242948_+	pfam01752, Peptidase_M9, Collagenase	NA|289aa|up_2|NC_009092.1_3242972_3243839_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|253aa|up_1|NC_009092.1_3244645_3245404_-	NA	NA|255aa|up_0|NC_009092.1_3245454_3246219_-	NA	NA|324aa|down_0|NC_009092.1_3247140_3248112_-	TIGR02136, ptsS_2, phosphate binding protein	NA|431aa|down_1|NC_009092.1_3248435_3249728_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|down_2|NC_009092.1_3250044_3250734_-	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB	NA|317aa|down_3|NC_009092.1_3250921_3251872_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|304aa|down_4|NC_009092.1_3252173_3253085_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|599aa|down_5|NC_009092.1_3253245_3255042_-	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|719aa|down_6|NC_009092.1_3255169_3257326_+	sd00006, TPR, Tetratricopeptide repeat	NA|519aa|down_7|NC_009092.1_3257517_3259074_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|451aa|down_8|NC_009092.1_3259148_3260501_+	pfam11892, DUF3412, Domain of unknown function (DUF3412)	NA|257aa|down_9|NC_009092.1_3260519_3261290_+	PRK09482, PRK09482, flap endonuclease-like protein; Provisional
GCF_000016065.1_ASM1606v1	NC_009092	Shewanella loihica PV-4, complete sequence	2	3656974-3657065	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,WYL,DinG,TnsE_C	Orphan	AGCGCCCTGCCTCCGCGCGACTAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,WYL,DinG,TnsE_C	NA,NA	NA|274aa|up_9|NC_009092.1_3645606_3646428_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|170aa|up_8|NC_009092.1_3646824_3647334_+	pfam04170, NlpE, NlpE N-terminal domain	NA|198aa|up_7|NC_009092.1_3647349_3647943_-	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|223aa|up_6|NC_009092.1_3648125_3648794_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|179aa|up_5|NC_009092.1_3648927_3649464_+	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|106aa|up_4|NC_009092.1_3649583_3649901_+	pfam11342, DUF3144, Protein of unknown function (DUF3144)	NA|205aa|up_3|NC_009092.1_3650009_3650624_-	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|517aa|up_2|NC_009092.1_3650645_3652196_-	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]	NA|503aa|up_1|NC_009092.1_3652392_3653901_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|712aa|up_0|NC_009092.1_3653957_3656093_-	TIGR03705, poly_P_kin, polyphosphate kinase 1	NA|859aa|down_0|NC_009092.1_3657177_3659754_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|483aa|down_1|NC_009092.1_3660366_3661815_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|481aa|down_2|NC_009092.1_3661996_3663439_+	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|532aa|down_3|NC_009092.1_3663755_3665351_+	PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated	NA|171aa|down_4|NC_009092.1_3665500_3666013_-	PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional	NA|327aa|down_5|NC_009092.1_3666371_3667352_+	pfam14321, DUF4382, Domain of unknown function (DUF4382)	NA|621aa|down_6|NC_009092.1_3667413_3669276_-	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|437aa|down_7|NC_009092.1_3669385_3670696_-	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|108aa|down_8|NC_009092.1_3670883_3671207_+	pfam11169, DUF2956, Protein of unknown function (DUF2956)	NA|105aa|down_9|NC_009092.1_3671270_3671585_-	pfam09904, HTH_43, Winged helix-turn helix
