The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008825	Methylibium petroleiphilum PM1, complete sequence	4044195	658137	667484	4044195		Enterobacteria_phage(28.57%)	9	NA	NA
WP_011828223.1|658137_658998_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.0	1.0e-06
WP_011828224.1|659005_659815_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011828225.1|659895_660450_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	46.7	1.2e-40
WP_011828226.1|660446_661331_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	58.8	3.7e-97
WP_011828227.1|661358_662255_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	31.1	1.0e-17
WP_011828228.1|662251_663325_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	49.1	2.3e-85
WP_041929512.1|663321_664791_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	26.9	1.5e-42
WP_011828230.1|664877_665972_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_011828231.1|665999_667484_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.6	5.1e-51
>prophage 2
NC_008825	Methylibium petroleiphilum PM1, complete sequence	4044195	3145623	3187533	4044195	integrase,transposase	Burkholderia_phage(62.5%)	29	3145554:3145613	3176497:3177714
3145554:3145613	attL	CTAGGGAAGCACTGATTTATCCGTGCAGGCCACGATGGCGTGCGGCGAATTCAGCGGCGA	NA	NA	NA	NA
WP_011830032.1|3145623_3146637_+|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	56.7	6.1e-96
WP_011830547.1|3146756_3148781_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	26.1	2.2e-44
WP_041929710.1|3148804_3150031_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011830549.1|3150203_3153893_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_011830550.1|3154090_3156616_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_148210964.1|3156666_3159219_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_158304624.1|3159305_3161081_-	HDOD domain-containing protein	NA	NA	NA	NA	NA
WP_041929711.1|3161208_3162078_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011830554.1|3162293_3162695_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011830555.1|3162744_3163953_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011830556.1|3164088_3164643_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_041929712.1|3165169_3165886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041929713.1|3165944_3166610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011830560.1|3166712_3167585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011830561.1|3167769_3168696_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_011830562.1|3168767_3169193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_193373372.1|3169443_3170937_+	recombinase family protein	NA	E5DV73	Deep-sea_thermophilic_phage	24.6	2.2e-09
WP_011830564.1|3170933_3171833_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_011830565.1|3171829_3172708_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_158304625.1|3172733_3173144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011830567.1|3173118_3174183_-	NERD domain-containing protein	NA	NA	NA	NA	NA
WP_011830568.1|3174281_3175238_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011830032.1|3175472_3176486_-|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	56.7	6.1e-96
WP_011830569.1|3176809_3177277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011830032.1|3177424_3178438_+|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	56.7	6.1e-96
3176497:3177714	attR	TCGCCGCTGAATTCGCCGCACGCCATCGTGGCCTGCACGGATAAATCAGTGCTTCCCTAGGGCGATGCCATCCCCTTGCAACGCAATCATGTATGAAGTGCAAGCTTGACTGCCTTGAGGACTCTTAACGTTGGGAACTGATGGCCGTATTCCCGCGACCAGCCATCTAGTAGCCATCGGTCTCGGATACCTACTCAGGATCACCAATCGGCGCTGGCCAATTCTGCGCGCGCGACTCGCAAGCCAATCCGGCCACCGGCACCAGCAACTGCTTTCCCACATGCAGCCGCAAGCTCAGCCAAACAATGCTGGGCTAGTCGTCGATGTCGTCGAAGATGCTGCGAGTACCGTGCTTCTCTTCCTGGACTCCGACGCTCCCCAGGGCGCGGGCACTGATCTTCGGCTCTGGTGGTTCTGCCTCCGAAATCCAGTCGTTCGCAGCCTTCTTCTCTCGCGTGATGATTCTCAACGCATCTTCGTCGCCACCAAACTGATCCTCCAGCGTGTTTAAAGACTCAAGGATGCCGTCTAGGTGCTCCTCCGGTGACTCTGACGAGTCATGACTGTCCTGGGCTTCCTTTCGCACCTCAGAAAACCTCGGCAGCAGAACGTCGCGCACTTGTAGTCTTAGGGTCTCAAATTCTTCGCCGACAAACATGCTCCGAATATCACTGTCTTTGAGCGCGTATAGGTCGTCCCCTTCAATAGCATAGGCGGAAACCTTGTCAACGAACTTCTTCCGATACTCTTCCGGCAGCAACCCATAGCCGTGGAGTCGCACGGCGAGATCAACCTCAGGTACAACACTGAGACGAAGCCCAGGGGTCGCAACTCGTTCAAGTAGCGTTGGCTCCTGCGCTAGGGAAGCACTGATTTATCCGTGCAGGCCACGATGGCGTGCGGCGAATTCAGCGGCGATGATGCTGCCATGAAGCAGACGAGTTTTGCCACTGCCGAGTACGCCGGCAAGAAGCGCCAGACGCGCCGGGAGCGCTTCCTGGCCGAGATGAACGTGGTGGTTCCGTGGGCGCGGCTTGAGGCGCTGATCGAGCCGCACTACCCGAAGAGCGGCAAGGTGGGCCGACCGCCGATTGGCGTGCCGCGGATGCTGCGCATGTACTTCCTGCAGCAGTGGTACACGCTGGCCGACGAGGCACTGGAAGACGCGCTGTACGACAGCCAGGCCATGCGCGAGTTCATCGGCATCGACCTTGGGCG	NA	NA	NA	NA
WP_011830032.1|3179664_3180678_+|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	56.7	6.1e-96
WP_011830572.1|3181538_3183365_-	ATP-binding protein	NA	E5E3R2	Burkholderia_phage	24.3	3.6e-14
WP_011829064.1|3185203_3186037_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	36.8	1.3e-32
WP_036236417.1|3186033_3187533_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_008825	Methylibium petroleiphilum PM1, complete sequence	4044195	3666165	3675761	4044195		Acinetobacter_phage(37.5%)	9	NA	NA
WP_011831030.1|3666165_3666744_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.3	1.4e-12
WP_011831031.1|3666761_3667145_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_011831019.1|3667371_3668562_-	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	28.5	6.9e-14
WP_148211082.1|3669115_3669832_-	uracil-DNA glycosylase	NA	A0A1L5JKJ8	Bubaline_alphaherpesvirus	52.3	5.2e-41
WP_011831033.1|3669828_3670632_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.6	2.0e-62
WP_011831034.1|3670628_3671663_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	45.4	5.1e-74
WP_011831035.1|3671663_3672233_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	60.7	2.2e-63
WP_011831036.1|3672234_3673710_-	anthranilate synthase component I	NA	S4VNU7	Pandoravirus	31.9	1.9e-45
WP_011831037.1|3674186_3675761_+	SGNH/GDSL hydrolase family protein	NA	A0A2K9L9B3	Tupanvirus	35.1	5.5e-11
>prophage 1
NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	599444	476023	557986	599444	transposase	Acinetobacter_phage(30.0%)	58	NA	NA
WP_011831851.1|476023_477115_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011831852.1|477373_478678_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	28.1	7.8e-11
WP_011831853.1|480092_481097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011831855.1|481667_482915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011831856.1|482951_483413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011831857.1|483434_483884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011831858.1|483984_484557_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_158304652.1|484838_487130_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_112185765.1|487204_487876_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011831861.1|487995_488406_+	cobalamin B12-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011831862.1|488427_489861_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_011831863.1|489877_490861_+	methylmalonyl Co-A mutase-associated GTPase MeaB	NA	NA	NA	NA	NA
WP_011831864.1|490847_492536_+	methylmalonyl-CoA mutase family protein	NA	NA	NA	NA	NA
WP_128003303.1|492564_492819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011831866.1|492849_493431_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_011831867.1|493456_495217_+	thiamine pyrophosphate-binding protein	NA	E5EQ70	Micromonas_sp._RCC1109_virus	25.9	1.2e-27
WP_011831868.1|495213_496236_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_011831869.1|496270_496828_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_011831870.1|496879_497737_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011831871.1|497798_498257_-	transporter	NA	NA	NA	NA	NA
WP_085984391.1|498323_499516_-|transposase	IS3-like element ISMpe1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.8	9.5e-56
WP_049820972.1|499576_499996_-	transporter	NA	NA	NA	NA	NA
WP_011831874.1|500444_501209_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_011831875.1|501307_502321_-	oxidoreductase	NA	NA	NA	NA	NA
WP_011831876.1|502406_503819_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_011831877.1|505221_506319_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_148211123.1|506318_506759_+	HIT family protein	NA	NA	NA	NA	NA
WP_049820974.1|506781_509313_+	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	35.7	2.2e-70
WP_011831880.1|509372_510266_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	30.2	1.3e-30
WP_041930431.1|510285_510918_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_011831882.1|511020_512277_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_011831883.1|512292_513096_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	2.9e-08
WP_011831884.1|513127_514450_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_041930432.1|515611_516541_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_085984391.1|520303_521496_-|transposase	IS3-like element ISMpe1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.8	9.5e-56
WP_158304635.1|521524_521665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041930433.1|522630_522855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011831891.1|523103_523481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011831892.1|523736_525071_-	4-hydroxybutyrate CoA-transferase	NA	NA	NA	NA	NA
WP_112187985.1|525790_527455_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011831894.1|527506_527992_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_011831896.1|529942_532360_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_011831897.1|532416_533784_+	DUF1329 domain-containing protein	NA	NA	NA	NA	NA
WP_041930435.1|533786_534827_+	photosystem II stability/assembly factor-like protein	NA	NA	NA	NA	NA
WP_085984391.1|536260_537452_+|transposase	IS3-like element ISMpe1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.8	9.5e-56
WP_041930437.1|538143_539523_+	DUF1329 domain-containing protein	NA	NA	NA	NA	NA
WP_148211124.1|539834_540395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011831901.1|540606_541986_-	DUF1329 domain-containing protein	NA	NA	NA	NA	NA
WP_011831902.1|542128_543979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041930435.1|544004_545045_-	photosystem II stability/assembly factor-like protein	NA	NA	NA	NA	NA
WP_011831904.1|545047_546415_-	DUF1329 domain-containing protein	NA	NA	NA	NA	NA
WP_011831905.1|546473_548894_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_083768024.1|549639_551193_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_112187925.1|552730_555424_-	ATP-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_193373406.1|555561_555735_-	rubredoxin	NA	NA	NA	NA	NA
WP_011831913.1|555734_555926_-	rubredoxin	NA	NA	NA	NA	NA
WP_158304653.1|555985_556810_-	alpha/beta hydrolase fold domain-containing protein	NA	A0A167RJ59	Powai_lake_megavirus	37.3	2.2e-35
WP_011827983.1|557026_557986_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	63.1	4.5e-109
