assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000015545.1_ASM1554v1	NC_008782	Acidovorax sp. JS42, complete sequence	1	499288-499678	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,PD-DExK,csa3,RT,DinG,DEDDh,Cas9_archaeal	Type I-F	TTTCTGAGCTGCCTATGCGGCAGTGAAC,TTTCTGAGCTGCCTATGCGGCAGTGAAC,TTTCTGAGCTGCCTATGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	5,6,6	6	TypeI-F	WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,PD-DExK,csa3,RT,DinG,DEDDh,Cas9_archaeal,cas4	NA,NA	NA|273aa|up_9|NC_008782.1_487960_488779_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|249aa|up_8|NC_008782.1_489126_489873_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|651aa|up_7|NC_008782.1_490219_492172_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|331aa|up_6|NC_008782.1_492375_493368_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|200aa|up_5|NC_008782.1_493584_494184_+	TIGR04177, conserved_hypothetical_protein_partial, exosortase H, IPTLxxWG-CTERM-specific	NA|347aa|up_4|NC_008782.1_494886_495927_-	PRK11768, PRK11768, serine/threonine protein kinase	NA|480aa|up_3|NC_008782.1_495962_497402_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|253aa|up_2|NC_008782.1_497445_498204_-	cd00838, MPP_superfamily, metallophosphatase superfamily, metallophosphatase domain	NA|139aa|up_1|NC_008782.1_498334_498751_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|152aa|up_0|NC_008782.1_498812_499268_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	cas6f|192aa|down_0|NC_008782.1_504021_504597_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|342aa|down_1|NC_008782.1_504610_505636_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|361aa|down_2|NC_008782.1_505692_506775_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|465aa|down_3|NC_008782.1_506771_508166_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1179aa|down_4|NC_008782.1_508221_511758_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|335aa|down_5|NC_008782.1_511754_512759_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|394aa|down_6|NC_008782.1_512794_513976_-	cd06819, PLPDE_III_LS_D-TA, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase	NA|215aa|down_7|NC_008782.1_513959_514604_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|155aa|down_8|NC_008782.1_514626_515091_-	PRK11667, PRK11667, hypothetical protein; Provisional	NA|205aa|down_9|NC_008782.1_515117_515732_-	pfam13590, DUF4136, Domain of unknown function (DUF4136)
GCF_000015545.1_ASM1554v1	NC_008782	Acidovorax sp. JS42, complete sequence	2	499830-503883	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,PD-DExK,csa3,RT,DinG,DEDDh,Cas9_archaeal	Type I-F	TTTCTGAGCTGCCTATGCGGCAGTGAAC,TTTCTGAGCTGCCTATGCGGCAGTGAAC,TTTCTGAGCTGCCTATGCGGCAGTGAAC,TTTCTGAGCTGCCTATGCGGCAGTGAAC	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	23,67,67,23	67	TypeI-F	WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,PD-DExK,csa3,RT,DinG,DEDDh,Cas9_archaeal,cas4	NA,NA	NA|273aa|up_9|NC_008782.1_487960_488779_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|249aa|up_8|NC_008782.1_489126_489873_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|651aa|up_7|NC_008782.1_490219_492172_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|331aa|up_6|NC_008782.1_492375_493368_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|200aa|up_5|NC_008782.1_493584_494184_+	TIGR04177, conserved_hypothetical_protein_partial, exosortase H, IPTLxxWG-CTERM-specific	NA|347aa|up_4|NC_008782.1_494886_495927_-	PRK11768, PRK11768, serine/threonine protein kinase	NA|480aa|up_3|NC_008782.1_495962_497402_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|253aa|up_2|NC_008782.1_497445_498204_-	cd00838, MPP_superfamily, metallophosphatase superfamily, metallophosphatase domain	NA|139aa|up_1|NC_008782.1_498334_498751_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|152aa|up_0|NC_008782.1_498812_499268_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	cas6f|192aa|down_0|NC_008782.1_504021_504597_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|342aa|down_1|NC_008782.1_504610_505636_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|361aa|down_2|NC_008782.1_505692_506775_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|465aa|down_3|NC_008782.1_506771_508166_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1179aa|down_4|NC_008782.1_508221_511758_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|335aa|down_5|NC_008782.1_511754_512759_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|394aa|down_6|NC_008782.1_512794_513976_-	cd06819, PLPDE_III_LS_D-TA, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase	NA|215aa|down_7|NC_008782.1_513959_514604_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|155aa|down_8|NC_008782.1_514626_515091_-	PRK11667, PRK11667, hypothetical protein; Provisional	NA|205aa|down_9|NC_008782.1_515117_515732_-	pfam13590, DUF4136, Domain of unknown function (DUF4136)
GCF_000015545.1_ASM1554v1	NC_008782	Acidovorax sp. JS42, complete sequence	3	2141331-2141409	3	CRISPRCasFinder	no		WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,PD-DExK,csa3,RT,DinG,DEDDh,Cas9_archaeal	Orphan	GCTGCACTGCGGCGGCCACCTGCGC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,PD-DExK,csa3,RT,DinG,DEDDh,Cas9_archaeal,cas4	NA|80aa|up_2|NC_008782.1_2137612_2137852_+,NA|135aa|up_1|NC_008782.1_2137877_2138282_+,NA	NA|902aa|up_9|NC_008782.1_2129815_2132521_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|118aa|up_8|NC_008782.1_2132527_2132881_+	PRK09272, PRK09272, hypothetical protein; Provisional	NA|194aa|up_7|NC_008782.1_2132925_2133507_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|113aa|up_6|NC_008782.1_2134993_2135332_-	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2	NA|237aa|up_5|NC_008782.1_2135363_2136074_-	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|221aa|up_4|NC_008782.1_2136121_2136784_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|182aa|up_3|NC_008782.1_2136914_2137460_+	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|80aa|up_2|NC_008782.1_2137612_2137852_+	NA	NA|135aa|up_1|NC_008782.1_2137877_2138282_+	NA	NA|696aa|up_0|NC_008782.1_2138458_2140546_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|408aa|down_0|NC_008782.1_2141968_2143192_+	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|151aa|down_1|NC_008782.1_2143256_2143709_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|390aa|down_2|NC_008782.1_2143846_2145016_+	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|610aa|down_3|NC_008782.1_2145016_2146846_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|212aa|down_4|NC_008782.1_2147014_2147650_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|721aa|down_5|NC_008782.1_2147774_2149937_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|338aa|down_6|NC_008782.1_2149948_2150962_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|511aa|down_7|NC_008782.1_2150987_2152520_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|683aa|down_8|NC_008782.1_2152541_2154590_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|154aa|down_9|NC_008782.1_2154649_2155111_+	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
GCF_000015545.1_ASM1554v1	NC_008782	Acidovorax sp. JS42, complete sequence	4	3576431-3576532	4	CRISPRCasFinder	no	Cas9_archaeal	WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,PD-DExK,csa3,RT,DinG,DEDDh,Cas9_archaeal	 Type II-B,Type II-A, or Type II-C?	CCGGGCCGCACCCCAGCGATGGGTGGGACTGCAGTC	36	0	0	NA	NA	NA	1	1	TypeII-B,TypeII-A,orTypeII-C?	WYL,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,PD-DExK,csa3,RT,DinG,DEDDh,Cas9_archaeal,cas4	NA,NA|186aa|down_1|NC_008782.1_3578413_3578971_+	NA|409aa|up_9|NC_008782.1_3565485_3566712_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|130aa|up_8|NC_008782.1_3567121_3567511_+	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|222aa|up_7|NC_008782.1_3567510_3568176_+	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|211aa|up_6|NC_008782.1_3568236_3568869_-	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|777aa|up_5|NC_008782.1_3568930_3571261_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|318aa|up_4|NC_008782.1_3571553_3572507_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|78aa|up_3|NC_008782.1_3572740_3572974_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|57aa|up_2|NC_008782.1_3572994_3573165_+	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|404aa|up_1|NC_008782.1_3573303_3574515_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|426aa|up_0|NC_008782.1_3574647_3575925_-	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|83aa|down_0|NC_008782.1_3577956_3578205_+	pfam07866, DUF1653, Protein of unknown function (DUF1653)	NA|186aa|down_1|NC_008782.1_3578413_3578971_+	NA	NA|195aa|down_2|NC_008782.1_3579035_3579620_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|226aa|down_3|NC_008782.1_3579643_3580321_+	pfam04337, DUF480, Protein of unknown function, DUF480	NA|394aa|down_4|NC_008782.1_3580408_3581590_+	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|372aa|down_5|NC_008782.1_3581602_3582718_+	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|329aa|down_6|NC_008782.1_3583116_3584103_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|440aa|down_7|NC_008782.1_3584262_3585582_+	COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]	Cas9_archaeal|186aa|down_8|NC_008782.1_3585645_3586203_-	pfam14279, HNH_5, HNH endonuclease	NA|348aa|down_9|NC_008782.1_3586365_3587409_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
