The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008781	Polaromonas naphthalenivorans CJ2, complete genome	4410291	419900	443963	4410291	transposase	Bodo_saltans_virus(25.0%)	12	NA	NA
WP_086000529.1|419900_420855_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	21.9	1.1e-09
WP_011799836.1|421047_422730_-	phospholipase D family protein	NA	NA	NA	NA	NA
WP_011799837.1|422890_424816_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	6.2e-49
WP_041376462.1|431064_431376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798428.1|431573_433643_+	serine recombinase	NA	NA	NA	NA	NA
WP_011799840.1|434613_435651_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	34.6	1.0e-34
WP_011799842.1|436530_437613_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011799845.1|439114_439402_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011799846.1|439443_439854_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_011799847.1|439930_441178_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	41.7	2.0e-48
WP_011799848.1|441483_442551_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011799849.1|442922_443963_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_008781	Polaromonas naphthalenivorans CJ2, complete genome	4410291	1437746	1482787	4410291	tRNA,transposase,protease	Escherichia_phage(25.0%)	45	NA	NA
WP_011800757.1|1437746_1439624_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	49.9	7.4e-164
WP_011800758.1|1439758_1440211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011800759.1|1440338_1440929_-	DUF3455 domain-containing protein	NA	NA	NA	NA	NA
WP_011800760.1|1441307_1442366_+	porin	NA	NA	NA	NA	NA
WP_011800761.1|1442520_1443168_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	32.4	1.1e-18
WP_011800762.1|1443278_1444112_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_011800763.1|1444120_1444972_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011800764.1|1445049_1445877_-|protease	proteasome-type protease	protease	NA	NA	NA	NA
WP_011800765.1|1445916_1448529_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.1	3.0e-22
WP_011800766.1|1448697_1449588_-	DMT family transporter	NA	NA	NA	NA	NA
WP_011800767.1|1449678_1450593_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011800768.1|1450787_1451132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011800769.1|1451151_1451562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011800770.1|1452342_1453125_+	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
WP_011800771.1|1453156_1455391_-	FUSC family protein	NA	NA	NA	NA	NA
WP_011800772.1|1455775_1456588_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_041376581.1|1456625_1457414_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_011800774.1|1457410_1458148_-	3-oxoacyl-ACP reductase FabG	NA	M1NMS3	Moumouvirus	35.4	2.8e-05
WP_157040384.1|1458144_1458669_-	3-hydroxylacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_011800776.1|1458668_1459505_-	3-oxoacyl-ACP synthase	NA	NA	NA	NA	NA
WP_041376582.1|1459536_1460730_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA	NA
WP_011800778.1|1460763_1461486_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_011800779.1|1461482_1462286_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011800780.1|1462278_1464615_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_011800781.1|1464623_1465274_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
WP_011800782.1|1465277_1466258_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_011800783.1|1467914_1468595_-	membrane protein	NA	NA	NA	NA	NA
WP_011800784.1|1468591_1468888_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_011800785.1|1468972_1469965_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_041376586.1|1470134_1470962_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_011800787.1|1470971_1471751_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_011800788.1|1471831_1472431_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_086000537.1|1472427_1473021_-	DUF615 domain-containing protein	NA	NA	NA	NA	NA
WP_011800790.1|1473042_1474452_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_157040225.1|1474528_1475341_+	DUF4399 domain-containing protein	NA	NA	NA	NA	NA
WP_011800792.1|1475341_1475803_-|tRNA	aspartyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
WP_011484193.1|1475925_1476138_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_157040226.1|1476253_1476418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011800794.1|1476393_1476699_+	type II toxin-antitoxin system HigB family toxin	NA	A0A0P0ZE17	Stx2-converting_phage	44.4	1.2e-15
WP_157040385.1|1476719_1477079_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	65.2	3.6e-35
WP_011800796.1|1477184_1477403_-	cell division protein FtsK	NA	NA	NA	NA	NA
WP_011799840.1|1477519_1478557_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	34.6	1.0e-34
WP_011800797.1|1478822_1480103_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	44.9	2.7e-56
WP_011799848.1|1480307_1481375_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011799849.1|1481746_1482787_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_008781	Polaromonas naphthalenivorans CJ2, complete genome	4410291	1829251	1848971	4410291	tRNA,transposase	Klebsiella_phage(33.33%)	18	NA	NA
WP_011801124.1|1829251_1830034_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_011801125.1|1830083_1830713_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_011801126.1|1830751_1832269_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	43.5	5.4e-80
WP_011801127.1|1832363_1833089_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_011801128.1|1833127_1834420_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_011801129.1|1834429_1835353_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_011801130.1|1835731_1836601_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_011801131.1|1836597_1837065_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_011801132.1|1837086_1837689_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_011801133.1|1837707_1839207_+	ribonuclease G	NA	NA	NA	NA	NA
WP_011801134.1|1839226_1839976_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011801135.1|1839972_1841184_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_011801137.1|1841485_1842523_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	28.5	2.3e-29
WP_011801138.1|1842593_1843079_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_083758027.1|1843075_1844368_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_157040246.1|1844069_1845624_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	36.4	6.8e-46
WP_011799961.1|1846259_1847615_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_011801141.1|1847996_1848971_+|transposase	IS1595-like element ISPna2 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_008781	Polaromonas naphthalenivorans CJ2, complete genome	4410291	2398581	2407365	4410291	protease,portal,tail	Pseudomonas_phage(66.67%)	8	NA	NA
WP_157040266.1|2398581_2401284_-|tail	phage tail tape measure protein	tail	D9ZNE6	Clostridium_phage	31.1	5.5e-43
WP_011801635.1|2401431_2402190_-	hypothetical protein	NA	L7P7U8	Pseudomonas_phage	28.3	3.8e-10
WP_011801636.1|2402221_2402641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011801637.1|2402641_2402950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157040267.1|2402988_2403354_-	DUF2190 family protein	NA	A5LH31	Enterobacteria_phage	34.4	5.5e-07
WP_011801639.1|2403418_2405443_-|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	45.2	1.7e-118
WP_011801640.1|2405541_2407131_-|portal	phage portal protein	portal	A0A1W6JTB6	Pseudomonas_phage	42.7	3.4e-101
WP_011801641.1|2407140_2407365_-	hypothetical protein	NA	A0A0A0YRQ0	Pseudomonas_phage	62.3	8.6e-11
>prophage 6
NC_008781	Polaromonas naphthalenivorans CJ2, complete genome	4410291	2425319	2432182	4410291	integrase	Gordonia_phage(16.67%)	8	2419845:2419864	2437541:2437560
2419845:2419864	attL	GATCCGCGCCGAGGTCGCCA	NA	NA	NA	NA
WP_011801669.1|2425319_2426315_+|integrase	site-specific integrase	integrase	A0A160DEV1	Gordonia_phage	40.8	3.0e-07
WP_011801670.1|2426498_2427221_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	38.5	6.4e-39
WP_011801671.1|2427247_2427586_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_011801672.1|2427625_2429488_-	Fe-S protein assembly chaperone HscA	NA	F2Y2E1	Organic_Lake_phycodnavirus	39.7	4.1e-98
WP_011801673.1|2429519_2430038_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_011801674.1|2430135_2430459_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	58.9	2.9e-28
WP_011801675.1|2430495_2430897_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	77.6	8.9e-51
WP_011801676.1|2430964_2432182_-	IscS subfamily cysteine desulfurase	NA	A0A2K9L2Y3	Tupanvirus	20.9	5.7e-08
2437541:2437560	attR	GATCCGCGCCGAGGTCGCCA	NA	NA	NA	NA
>prophage 7
NC_008781	Polaromonas naphthalenivorans CJ2, complete genome	4410291	3446077	3533389	4410291	tail,plate,terminase,head,protease,capsid,integrase,tRNA,portal	Burkholderia_phage(31.58%)	96	3498566:3498582	3535508:3535524
WP_011802613.1|3446077_3447043_+|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.3	9.8e-11
WP_011802614.1|3447055_3448075_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_011802615.1|3448191_3449178_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_011802616.1|3449199_3450264_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_011802617.1|3450400_3450598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157040311.1|3450651_3451782_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_011802619.1|3451884_3453219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802620.1|3453254_3454007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041377367.1|3454055_3454637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802622.1|3454694_3454970_-	J domain-containing protein	NA	A0A1V0SIM1	Klosneuvirus	45.3	5.8e-09
WP_011802623.1|3455259_3455757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049763775.1|3455850_3456579_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	41.0	2.6e-32
WP_011802625.1|3456799_3458056_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_049763704.1|3458090_3459065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802627.1|3459111_3460854_+	single-stranded-DNA-specific exonuclease RecJ	NA	A0A0R6PDC6	Moraxella_phage	30.4	5.1e-26
WP_011802628.1|3461142_3462267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802629.1|3462299_3462698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802630.1|3462747_3465753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802631.1|3465900_3467301_-	Fic family protein	NA	NA	NA	NA	NA
WP_011802632.1|3467480_3469133_-	exonuclease	NA	NA	NA	NA	NA
WP_049763705.1|3469135_3470395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802634.1|3470541_3470772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802635.1|3470807_3471476_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_011802636.1|3471578_3471770_+	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_011802637.1|3471911_3473015_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.7	1.2e-25
WP_011802638.1|3473085_3474375_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_011802639.1|3474401_3475316_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011802640.1|3475318_3476203_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011802641.1|3476199_3476910_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011802642.1|3476918_3477674_+	Asp/Glu racemase	NA	NA	NA	NA	NA
WP_011802643.1|3477742_3478606_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_011802644.1|3478602_3479508_+	DMT family transporter	NA	NA	NA	NA	NA
WP_011802645.1|3479518_3480154_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_011802646.1|3480187_3480856_+|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_011802647.1|3480891_3482211_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011802648.1|3482290_3482476_-	CsbD family protein	NA	NA	NA	NA	NA
WP_011802649.1|3482573_3483314_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.1	9.8e-27
WP_011802650.1|3483310_3485353_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_011802651.1|3485534_3487175_+	acyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	25.9	5.0e-31
WP_011802652.1|3487297_3488983_+	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA	NA
WP_011802653.1|3489027_3489504_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_011802654.1|3489540_3491322_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_041377372.1|3491403_3491709_+	DUF485 domain-containing protein	NA	NA	NA	NA	NA
WP_011802656.1|3491705_3493382_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_041376758.1|3493789_3493993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802657.1|3494948_3495995_-|portal	phage portal protein	portal	E5E3X1	Burkholderia_phage	68.2	5.3e-135
WP_011802658.1|3495994_3497785_-|terminase	terminase ATPase subunit family protein	terminase	E5FFI8	Burkholderia_phage	67.3	1.0e-231
WP_041377374.1|3497919_3498771_+|capsid	GPO family capsid scaffolding protein	capsid	E5FFI7	Burkholderia_phage	46.6	2.9e-59
3498566:3498582	attL	CCGACGGCATGGGCCAG	NA	NA	NA	NA
WP_011802660.1|3498820_3499828_+|capsid	phage major capsid protein, P2 family	capsid	E5FFI6	Burkholderia_phage	59.1	6.2e-109
WP_011802661.1|3499833_3500616_+|terminase	phage small terminase subunit	terminase	A0A077K804	Ralstonia_phage	48.7	1.4e-44
WP_011802662.1|3500646_3501111_+|head	head completion/stabilization protein	head	E5E3S2	Burkholderia_phage	50.6	2.8e-32
WP_011802663.1|3501110_3501317_+|tail	tail protein	tail	E5E3S0	Burkholderia_phage	58.6	3.8e-13
WP_011802664.1|3501320_3501539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802665.1|3501535_3502048_+	glycoside hydrolase family protein	NA	I6NW41	Burkholderia_virus	59.2	4.1e-48
WP_011802666.1|3502044_3502551_+	phage protein	NA	NA	NA	NA	NA
WP_011802667.1|3502552_3502981_+|tail	phage tail protein	tail	A0A2H4J906	uncultured_Caudovirales_phage	47.8	4.6e-29
WP_011802668.1|3502984_3503452_+	phage virion morphogenesis protein	NA	K4NZQ8	Burkholderia_phage	53.2	1.9e-36
WP_011802669.1|3503524_3504178_+|plate	phage baseplate assembly protein V	plate	A0A2H4JFJ8	uncultured_Caudovirales_phage	42.7	1.4e-37
WP_041377376.1|3504183_3504546_+|plate	baseplate assembly protein	plate	A0A2H4JE52	uncultured_Caudovirales_phage	59.8	1.4e-31
WP_011802671.1|3504542_3505430_+|plate	baseplate assembly protein	plate	A0A193GYM8	Enterobacter_phage	54.1	2.5e-77
WP_011802672.1|3505422_3506100_+|tail	phage tail protein I	tail	D5LGZ2	Escherichia_phage	46.0	1.5e-37
WP_011802673.1|3506106_3507903_+	hypothetical protein	NA	D4P7M1	Rhodococcus_phage	28.6	3.4e-25
WP_011802674.1|3507907_3508645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802675.1|3508783_3510235_+|tail	tail protein	tail	A0A193GYM0	Enterobacter_phage	51.4	1.5e-124
WP_011802676.1|3510240_3510531_+	hypothetical protein	NA	A0A193GYZ3	Enterobacter_phage	58.9	1.3e-19
WP_011802677.1|3510543_3511719_+|tail	phage tail sheath protein	tail	A0A2H4JCP8	uncultured_Caudovirales_phage	67.8	4.2e-149
WP_011802678.1|3511744_3512257_+|tail	phage major tail tube protein	tail	E5FFG8	Burkholderia_phage	57.4	3.2e-53
WP_011802679.1|3512318_3512561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802680.1|3512592_3512949_+|tail	phage tail assembly protein	tail	A4PE51	Ralstonia_virus	56.7	2.8e-11
WP_011802681.1|3512957_3513074_+|tail	GpE family phage tail protein	tail	E5E3Q0	Burkholderia_phage	68.6	3.9e-07
WP_011802682.1|3513108_3515700_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	40.4	1.3e-118
WP_011802683.1|3515720_3516170_+|tail	phage tail protein	tail	A0A2H4JG54	uncultured_Caudovirales_phage	56.4	9.4e-41
WP_011802684.1|3516175_3517210_+	phage late control D family protein	NA	E5E3U4	Burkholderia_phage	51.6	1.8e-82
WP_011802685.1|3517326_3517707_-	transcriptional regulator	NA	E5E3P4	Burkholderia_phage	34.2	3.6e-09
WP_041376760.1|3517791_3517989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041376761.1|3518051_3518246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041376762.1|3518285_3518477_+	hypothetical protein	NA	E5E3T9	Burkholderia_phage	56.1	8.1e-10
WP_011802687.1|3518383_3518809_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_157040312.1|3518568_3521694_+	bifunctional DNA primase/helicase	NA	A0A077K8T2	Ralstonia_phage	46.9	2.6e-246
WP_011802689.1|3521741_3522446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802690.1|3522467_3523019_+	hypothetical protein	NA	A0A0N7KZV8	Escherichia_phage	55.5	4.1e-30
WP_011802691.1|3523121_3523514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802692.1|3523535_3523949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011802693.1|3524304_3524925_+	DUF1484 family protein	NA	NA	NA	NA	NA
WP_011802694.1|3524921_3525419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802695.1|3525415_3526450_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011802696.1|3526464_3527712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802697.1|3527711_3527978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041376765.1|3528048_3528270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802698.1|3528269_3528686_+	DUF2528 family protein	NA	NA	NA	NA	NA
WP_011802699.1|3528682_3529627_+	phage Gp37/Gp68 family protein	NA	Q8W6R4	Burkholderia_virus	60.2	2.7e-106
WP_011802700.1|3529623_3529881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041376766.1|3529877_3530360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011802701.1|3530356_3530581_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_011802702.1|3530588_3531785_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A077KET4	Ralstonia_phage	47.1	1.2e-90
WP_011802703.1|3532054_3533389_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.8	9.8e-94
3535508:3535524	attR	CTGGCCCATGCCGTCGG	NA	NA	NA	NA
>prophage 8
NC_008781	Polaromonas naphthalenivorans CJ2, complete genome	4410291	3881982	3890048	4410291		Acinetobacter_phage(50.0%)	8	NA	NA
WP_011799636.1|3881982_3883173_-	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	28.3	7.6e-13
WP_011803010.1|3883840_3884578_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	48.1	3.7e-50
WP_011803011.1|3884592_3885384_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	52.5	3.0e-66
WP_041376800.1|3885439_3886486_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	47.3	4.5e-78
WP_011803013.1|3886535_3887585_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_011803014.1|3887642_3888227_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	59.8	2.7e-64
WP_011803015.1|3888230_3888545_-	chorismate mutase	NA	NA	NA	NA	NA
WP_011803016.1|3888548_3890048_-	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	28.8	3.7e-33
>prophage 1
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	0	3492	353291	transposase	Klebsiella_phage(33.33%)	3	NA	NA
WP_011797793.1|482_1040_-	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	58.8	7.0e-54
WP_011797795.1|1476_2436_-|transposase	IS5-like element ISPna4 family transposase	transposase	Q1MVF0	Enterobacteria_phage	42.8	6.0e-61
WP_011797796.1|2736_3492_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	45.3	3.1e-52
>prophage 2
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	8207	8825	353291		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_041377518.1|8207_8825_+	hypothetical protein	NA	A0A2H4JFQ3	uncultured_Caudovirales_phage	34.1	2.8e-27
>prophage 3
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	14027	22142	353291		Brucella_phage(20.0%)	11	NA	NA
WP_011494290.1|14027_14369_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	50.0	2.7e-16
WP_011494291.1|14358_14679_+	addiction module antidote protein	NA	NA	NA	NA	NA
WP_139174265.1|14749_14908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797806.1|15182_15839_-	OmpW family protein	NA	NA	NA	NA	NA
WP_011797807.1|15985_16846_-	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA	A0A286MQ79	Mycobacterium_phage	30.1	3.2e-05
WP_011797808.1|16916_17957_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	35.4	1.5e-44
WP_011797809.1|17974_18889_-	acetaldehyde dehydrogenase (acetylating)	NA	G8DDL4	Micromonas_pusilla_virus	36.4	1.9e-35
WP_011797810.1|18909_19692_-	2-oxopent-4-enoate hydratase	NA	NA	NA	NA	NA
WP_011797811.1|19779_20391_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_011797812.1|20422_21301_-	biphenyl-2,3-diol 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_011797813.1|21311_22142_-	cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	27.0	1.9e-07
>prophage 4
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	28649	39289	353291		Yersinia_phage(25.0%)	10	NA	NA
WP_011797822.1|28649_29477_+	DUF945 domain-containing protein	NA	A0A2C9CYF8	Yersinia_phage	39.8	6.2e-46
WP_011797823.1|30594_31101_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_011797824.1|31718_33758_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	27.6	1.3e-23
WP_011797825.1|34522_34831_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_011797826.1|34877_35174_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011797827.1|35616_35967_+	DUF2958 domain-containing protein	NA	A0A1W6DX76	Sphingobium_phage	54.1	9.6e-25
WP_011797828.1|36328_37126_+	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
WP_011797829.1|37210_37513_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011797830.1|37548_38400_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_011797831.1|38650_39289_+	AAA family ATPase	NA	A0A2H4JGZ2	uncultured_Caudovirales_phage	40.5	1.2e-33
>prophage 5
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	46176	56727	353291		Ostreococcus_tauri_virus(33.33%)	6	NA	NA
WP_007182750.1|46176_47925_+	ubiquinone biosynthesis protein UbiB	NA	A9YVW0	Ostreococcus_tauri_virus	27.4	4.5e-38
WP_007182749.1|47921_50582_+	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA	NA
WP_007182748.1|50578_51550_+	patatin	NA	A0A1X7QFZ0	Faustovirus	27.2	1.2e-05
WP_007182747.1|51542_52352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011797838.1|52348_53449_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011797839.1|53445_56727_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.0	4.3e-50
>prophage 6
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	61876	65158	353291		Catovirus(100.0%)	2	NA	NA
WP_011797843.1|61876_63517_+	FAD-binding protein	NA	A0A1V0S9M4	Catovirus	28.7	1.5e-48
WP_011797844.1|63520_65158_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.7	5.2e-12
>prophage 7
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	113837	115505	353291		Pseudomonas_phage(100.0%)	1	NA	NA
WP_011797897.1|113837_115505_-	AAA family ATPase	NA	A0A0K0LA94	Pseudomonas_phage	33.3	1.2e-43
>prophage 8
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	122118	199906	353291	transposase,integrase	Acidithiobacillus_phage(14.29%)	47	116794:116813	192458:192477
116794:116813	attL	GCGACCTAATTAGGTCGCTT	NA	NA	NA	NA
WP_011797904.1|122118_122787_-	AAA family ATPase	NA	A0A222YXS3	Escherichia_phage	32.1	1.3e-17
WP_157040459.1|123119_123305_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049763799.1|123238_123613_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
WP_011797906.1|123667_123868_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.6	2.9e-10
WP_011797907.1|124071_125946_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	25.9	1.1e-05
WP_011797908.1|126242_126839_-	hypothetical protein	NA	S5WA20	Leptospira_phage	32.0	7.7e-06
WP_011797909.1|126974_128513_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_011797910.1|128724_129060_+	DUF4258 domain-containing protein	NA	NA	NA	NA	NA
WP_011797911.1|129167_129890_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_157040460.1|129890_130607_+	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_011797913.1|130613_132041_+	protein kinase	NA	NA	NA	NA	NA
WP_157040461.1|131901_135375_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_011797915.1|135361_136801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157040462.1|136825_139267_+	AAA domain-containing protein	NA	NA	NA	NA	NA
WP_011797917.1|139263_141159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011797918.1|141165_143667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797919.1|143663_145226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797920.1|145573_149353_-	helicase SNF2	NA	A0A1B1ISM1	uncultured_Mediterranean_phage	26.9	2.7e-24
WP_041377541.1|149349_151170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797922.1|151157_151865_-	OmpA family protein	NA	NA	NA	NA	NA
WP_011797923.1|151861_154312_-	anti-phage defense ZorAB system ZorA	NA	NA	NA	NA	NA
WP_041377542.1|154416_154617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797925.1|156790_158065_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_157040486.1|158351_158705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011797927.1|158707_161203_+	Hsp70 family protein	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	28.8	7.6e-31
WP_011797928.1|161206_162655_+	AAA family ATPase	NA	A0A0K1L651	Scale_drop_disease_virus	28.0	3.0e-11
WP_011797929.1|162713_164369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157040463.1|164825_166365_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	37.0	1.9e-48
WP_157040464.1|166413_166719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797930.1|166678_168343_-	ATP-dependent helicase	NA	A0A1V0SAV1	Catovirus	23.9	8.1e-13
WP_011797931.1|168339_170277_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011797932.1|170792_172820_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_011797933.1|172816_174127_-	BREX system ATP-binding protein BrxD	NA	NA	NA	NA	NA
WP_011797934.1|174123_176850_-	BREX-2 system phosphatase PglZ	NA	NA	NA	NA	NA
WP_083758101.1|177214_177289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797936.1|180692_181241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157040465.1|181244_182441_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011797938.1|182343_186045_-	BREX-2 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA	NA
WP_011797939.1|186127_187297_-	ATPase	NA	NA	NA	NA	NA
WP_011797940.1|187487_191771_-	BREX system serine/threonine kinase PglW	NA	A0A2H4UVE2	Bodo_saltans_virus	23.7	9.4e-05
WP_011797941.1|191767_191989_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011797943.1|193001_193505_+	hypothetical protein	NA	NA	NA	NA	NA
192458:192477	attR	AAGCGACCTAATTAGGTCGC	NA	NA	NA	NA
WP_011797944.1|193642_194374_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	60.7	1.0e-76
WP_011797945.1|194415_195954_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	57.4	4.8e-161
WP_041377544.1|196613_197126_+	DUF2591 domain-containing protein	NA	F8TVJ2	EBPR_siphovirus	37.5	2.1e-12
WP_011797947.1|197438_197918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011797948.1|198154_199906_+	PRTRC system ParB family protein	NA	I3NLC2	Bifidobacterium_phage	30.2	2.6e-09
>prophage 9
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	206035	213877	353291		Agrobacterium_phage(50.0%)	4	NA	NA
WP_011797956.1|206035_210985_+	N-6 DNA methylase	NA	A0A223W0B5	Agrobacterium_phage	33.1	4.6e-221
WP_011797957.1|211148_211691_+	YcbK family protein	NA	NA	NA	NA	NA
WP_041377550.1|212203_212485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011797959.1|212962_213877_+	DUF932 domain-containing protein	NA	A0A0H4INH5	Stenotrophomonas_phage	37.5	5.6e-48
>prophage 10
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	222674	234824	353291		Bacillus_virus(25.0%)	10	NA	NA
WP_011797970.1|222674_224534_+	ATP-dependent helicase	NA	G3MA40	Bacillus_virus	25.1	2.2e-27
WP_157040468.1|224589_225219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797972.1|226288_227317_+	hypothetical protein	NA	R4JDJ1	Burkholderia_phage	32.3	1.8e-26
WP_011797973.1|227440_228844_+	DNA repair exonuclease-like protein	NA	NA	NA	NA	NA
WP_157040469.1|228994_229213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011797974.1|229163_229517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011797975.1|229819_232252_+	DNA repair ATPase	NA	Q6NDW9	Leptospira_phage	34.1	4.1e-21
WP_011797976.1|232374_232953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011797977.1|233189_234113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011797978.1|234179_234824_+	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	63.6	4.8e-38
>prophage 11
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	242314	246882	353291		Clostridium_botulinum_C_phage(100.0%)	4	NA	NA
WP_011797986.1|242314_243709_+	HNH endonuclease	NA	Q331Y3	Clostridium_botulinum_C_phage	32.4	8.8e-37
WP_011797987.1|243708_244344_+	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
WP_011797988.1|244509_245103_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_011797989.1|245523_246882_+	HNH endonuclease	NA	Q331Y3	Clostridium_botulinum_C_phage	32.5	1.6e-35
>prophage 12
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	261130	262006	353291		Escherichia_phage(100.0%)	1	NA	NA
WP_011798005.1|261130_262006_+	AntA/AntB antirepressor domain-containing protein	NA	A0A0P0ZG08	Escherichia_phage	48.2	4.3e-21
>prophage 13
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	277323	277674	353291		Cronobacter_phage(100.0%)	1	NA	NA
WP_049763812.1|277323_277674_-	DUF4113 domain-containing protein	NA	F1C5A5	Cronobacter_phage	38.9	1.9e-09
>prophage 14
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	289002	296014	353291		Enterobacteria_phage(50.0%)	5	NA	NA
WP_157040487.1|289002_289566_+	DNA/RNA non-specific endonuclease	NA	H6X497	Enterobacteria_phage	36.0	6.7e-12
WP_011798032.1|289578_289833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011798033.1|290218_291574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011798034.1|291752_292514_+	DUF1837 domain-containing protein	NA	NA	NA	NA	NA
WP_011798035.1|292513_296014_+	DEAD/DEAH box helicase	NA	F2Y0S4	Organic_Lake_phycodnavirus	22.5	3.0e-09
>prophage 15
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	314013	316325	353291	transposase	Acidithiobacillus_phage(100.0%)	2	NA	NA
WP_011797945.1|314013_315552_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	57.4	4.8e-161
WP_011797944.1|315593_316325_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	60.7	1.0e-76
>prophage 16
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	323213	325935	353291		Clostridium_botulinum_C_phage(50.0%)	3	NA	NA
WP_011798054.1|323213_324647_-	HNH endonuclease	NA	Q331Y3	Clostridium_botulinum_C_phage	32.0	3.8e-35
WP_041377585.1|324970_325174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798055.1|325224_325935_-	hypothetical protein	NA	Q6JIG5	Burkholderia_virus	41.8	1.4e-22
>prophage 17
NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	353291	341957	344595	353291	transposase	Leptospira_phage(50.0%)	3	NA	NA
WP_157040484.1|341957_343022_-	hypothetical protein	NA	S5WA20	Leptospira_phage	32.6	4.2e-31
WP_011798081.1|343021_343594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798082.1|343635_344595_-|transposase	IS5-like element ISPna5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	41.5	6.9e-57

>prophage 1
NC_008760	Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence	143747	17514	61523	143747	protease,transposase,integrase	Acinetobacter_phage(23.08%)	43	25042:25057	50737:50752
WP_083758109.1|17514_17736_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_157040544.1|17674_17953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076611837.1|18005_19049_-|transposase	IS701-like element ISPna6 family transposase	transposase	NA	NA	NA	NA
WP_157040545.1|19362_19512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798423.1|19861_20719_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
WP_011798424.1|20813_21116_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_011798425.1|21118_21520_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_157040546.1|22594_22801_+	hypothetical protein	NA	NA	NA	NA	NA
25042:25057	attL	AAGAACAGCGGTGAGA	NA	NA	NA	NA
WP_157040547.1|25475_27167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041376462.1|27457_27769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798428.1|27966_30036_+	serine recombinase	NA	A0A1B2LRQ3	Wolbachia_phage	26.5	4.0e-09
WP_157040557.1|30048_31449_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	39.3	2.6e-73
WP_157040548.1|33333_34608_-	tellurium resistance protein	NA	A0A160DF64	Gordonia_phage	29.6	8.1e-21
WP_011798434.1|35588_35774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798435.1|35809_37090_+|transposase	IS5-like element ISPna3 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	45.2	1.3e-58
WP_086000582.1|37862_38147_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	S5WIU1	Leptospira_phage	39.8	1.2e-12
WP_041377766.1|38841_39069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798440.1|39298_40243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041377801.1|40482_41526_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	51.0	1.6e-83
WP_011798442.1|41567_42146_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	37.7	1.4e-28
WP_011798443.1|42182_42758_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	41.3	1.1e-33
WP_011798444.1|43354_43936_+	TerD family protein	NA	A0A2P1N0C0	Streptomyces_phage	29.6	2.9e-10
WP_011798445.1|43943_44963_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_011798446.1|45016_46171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011798447.1|46148_46904_+	hypothetical protein	NA	A0A172Q0Q4	Acinetobacter_phage	29.0	2.9e-18
WP_011798448.1|46900_47992_+|protease	cysteine protease StiP family protein	protease	A0A172Q0S8	Acinetobacter_phage	32.1	1.2e-36
WP_011798449.1|47984_48932_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA	NA
WP_041377768.1|48934_50191_+	tellurium resistance protein	NA	NA	NA	NA	NA
WP_011798451.1|50201_51701_-	kinase	NA	NA	NA	NA	NA
50737:50752	attR	AAGAACAGCGGTGAGA	NA	NA	NA	NA
WP_157040558.1|51797_53387_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA	NA
WP_011798453.1|53530_54583_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_011798454.1|54667_55309_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_011798455.1|55315_55957_-	TerD family protein	NA	A0A2P1N0C0	Streptomyces_phage	32.8	9.1e-05
WP_011798456.1|55969_56608_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_011798457.1|56854_57163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798458.1|57274_57910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798459.1|57906_58269_-	DUF4810 domain-containing protein	NA	NA	NA	NA	NA
WP_011798460.1|58279_58612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798461.1|58611_59625_-	curli production assembly protein CsgG	NA	NA	NA	NA	NA
WP_049763843.1|59743_60301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798463.1|60389_60749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157040549.1|60763_61261_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	37.5	2.9e-19
WP_157040550.1|61262_61523_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_008760	Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence	143747	67548	117326	143747	tail,integrase,transposase	Wolbachia_phage(25.0%)	44	70955:70972	108189:108206
WP_157040553.1|67548_68133_-|integrase	integrase, catalytic region	integrase	NA	NA	NA	NA
WP_049763846.1|68145_69357_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011798475.1|69632_70439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011798476.1|70525_70747_-	YdcH family protein	NA	NA	NA	NA	NA
70955:70972	attL	AGCCCGCACGCCATGAAA	NA	NA	NA	NA
WP_011798477.1|71221_73051_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	31.1	1.0e-08
WP_049763847.1|73474_74461_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_011798479.1|74463_75657_-	AAA family ATPase	NA	A0A240F4U1	Ochrobactrum_phage	29.2	3.4e-29
WP_041377775.1|76188_77499_+	replication initiation protein	NA	NA	NA	NA	NA
WP_041377776.1|77990_78278_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041377777.1|78688_79819_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_157040554.1|80285_80435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011798484.1|80431_81538_+	ParB/RepB/Spo0J family partition protein	NA	S5VTK0	Leptospira_phage	29.1	4.0e-08
WP_157040555.1|81786_81954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798485.1|83263_84334_+	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	48.5	8.2e-83
WP_157040560.1|84338_84533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041376462.1|84752_85064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798428.1|85261_87331_+	serine recombinase	NA	A0A1B2LRQ3	Wolbachia_phage	26.5	4.0e-09
WP_011798486.1|87343_88750_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	39.3	2.6e-73
WP_011798487.1|88832_89174_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_041377779.1|89170_89530_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011798489.1|89633_89930_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011798491.1|91670_92828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011798492.1|92960_93977_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011798493.1|94694_95765_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_041377781.1|97344_98019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011798495.1|98165_98402_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_011798496.1|98741_99356_-	DUF1326 domain-containing protein	NA	NA	NA	NA	NA
WP_011798497.1|99488_100283_+	DUF2182 domain-containing protein	NA	NA	NA	NA	NA
WP_011798498.1|100461_100899_-	universal stress protein	NA	NA	NA	NA	NA
WP_011798500.1|101361_101760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157040556.1|102025_102193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798501.1|102527_104099_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011798502.1|104434_104677_-|tail	phage tail protein	tail	A0A218M5J9	Arthrobacter_phage	52.6	3.9e-09
WP_086000545.1|105301_106434_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_049763850.1|106722_107763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041377783.1|107897_108092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011798507.1|108200_108569_+	calcium-binding protein	NA	NA	NA	NA	NA
108189:108206	attR	AGCCCGCACGCCATGAAA	NA	NA	NA	NA
WP_011798508.1|108969_109374_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_011798278.1|109714_111052_-|transposase	IS4 family transposase	transposase	Q9JMP3	Wolbachia_phage	29.8	1.8e-55
WP_011798509.1|111603_111969_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_011798510.1|112856_113309_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_011798511.1|113642_114518_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA	NA
WP_011798512.1|114573_115206_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_157040256.1|115958_117326_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
>prophage 1
NC_008762	Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence	21611	0	5972	21611		Moraxella_phage(66.67%)	8	NA	NA
WP_011798588.1|1045_1798_-	hypothetical protein	NA	A0A0R6PKK0	Moraxella_phage	31.8	2.1e-16
WP_011798589.1|1797_2982_-	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	42.5	4.2e-72
WP_041377832.1|3009_3705_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_011798591.1|3997_4507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798592.1|4500_4917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157040569.1|4913_5084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798593.1|5112_5346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798594.1|5342_5972_-	AAA family ATPase	NA	B0ZSI1	Halomonas_phage	41.1	2.1e-38
>prophage 2
NC_008762	Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence	21611	13195	20820	21611		Leptospira_phage(25.0%)	6	NA	NA
WP_011798601.1|13195_16660_-	class I SAM-dependent DNA methyltransferase	NA	Q6NE04	Leptospira_phage	22.4	1.3e-20
WP_157040571.1|17279_18167_-	plasmid replication initiator-like protein	NA	A0A0K1Y6J9	Rhodobacter_phage	38.7	9.5e-45
WP_011798603.1|18289_18595_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011798604.1|18572_19037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011798605.1|19166_19736_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	59.3	2.0e-51
WP_011798606.1|20106_20820_-	DNA helicase	NA	A0A0R8V1H3	Thermobifida_phage	25.8	8.3e-07
