assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	1	156226-156310	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTGAACCGGGGAAACCG	23	1	5	156249-156287|156249-156287|156249-156287|156249-156287|156249-156287	NC_008699.1_4669432-4669470|NC_008699.1_4776326-4776364|NC_008699.1_504109-504071|NC_008699.1_1198869-1198831|NC_008699.1_4736280-4736318	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|191aa|up_8|NC_008699.1_145777_146350_-,NA|127aa|up_6|NC_008699.1_148880_149261_+,NA|224aa|up_5|NC_008699.1_149284_149956_+,NA|56aa|down_4|NC_008699.1_159673_159841_+,NA|366aa|down_9|NC_008699.1_166368_167466_+	NA|640aa|up_9|NC_008699.1_143604_145524_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|191aa|up_8|NC_008699.1_145777_146350_-	NA	NA|725aa|up_7|NC_008699.1_146444_148619_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|127aa|up_6|NC_008699.1_148880_149261_+	NA	NA|224aa|up_5|NC_008699.1_149284_149956_+	NA	NA|473aa|up_4|NC_008699.1_150059_151478_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|163aa|up_3|NC_008699.1_151664_152153_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|904aa|up_2|NC_008699.1_152213_154925_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|227aa|up_1|NC_008699.1_154924_155605_+	COG4279, COG4279, Uncharacterized conserved protein [Function unknown]	NA|183aa|up_0|NC_008699.1_155619_156168_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|88aa|down_0|NC_008699.1_156320_156584_-	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|135aa|down_1|NC_008699.1_156585_156990_-	cd14797, DUF302, Uncharacterized domain family DUF302	NA|127aa|down_2|NC_008699.1_156986_157367_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|719aa|down_3|NC_008699.1_157492_159649_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|56aa|down_4|NC_008699.1_159673_159841_+	NA	NA|522aa|down_5|NC_008699.1_160033_161599_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|504aa|down_6|NC_008699.1_161747_163259_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|635aa|down_7|NC_008699.1_163347_165252_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|316aa|down_8|NC_008699.1_165251_166199_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|366aa|down_9|NC_008699.1_166368_167466_+	NA
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	2	183660-183748	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTTAACCGGGGAAACCGGAAC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA	NA|123aa|up_9|NC_008699.1_175147_175516_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|266aa|up_8|NC_008699.1_175512_176310_+	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|313aa|up_7|NC_008699.1_176320_177259_+	PRK05590, PRK05590, hypothetical protein; Provisional	NA|285aa|up_6|NC_008699.1_177385_178240_-	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]	NA|379aa|up_5|NC_008699.1_178260_179397_-	cd07302, CHD, cyclase homology domain	NA|125aa|up_4|NC_008699.1_179429_179804_-	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	NA|408aa|up_3|NC_008699.1_179898_181122_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|197aa|up_2|NC_008699.1_181154_181745_-	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|394aa|up_1|NC_008699.1_181744_182926_-	PRK04194, PRK04194, nickel pincer cofactor biosynthesis protein LarC	NA|229aa|up_0|NC_008699.1_182922_183609_-	COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only]	NA|291aa|down_0|NC_008699.1_183810_184683_-	PRK11899, PRK11899, prephenate dehydratase; Provisional	NA|133aa|down_1|NC_008699.1_184809_185208_+	pfam14584, DUF4446, Protein of unknown function (DUF4446)	NA|156aa|down_2|NC_008699.1_185228_185696_+	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c	NA|525aa|down_3|NC_008699.1_185795_187370_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|425aa|down_4|NC_008699.1_187505_188780_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|283aa|down_5|NC_008699.1_188776_189625_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|166aa|down_6|NC_008699.1_189624_190122_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|265aa|down_7|NC_008699.1_190118_190913_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|193aa|down_8|NC_008699.1_190955_191534_+	cd03577, NTR_TIMP_like, NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling	NA|193aa|down_9|NC_008699.1_191630_192209_-	pfam10759, DUF2587, Protein of unknown function (DUF2587)
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	3	238672-238757	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTTAACCGGGGAAACCG	24	1	4	238696-238733|238696-238733|238696-238733|238696-238733	NC_008699.1_4776326-4776363|NC_008699.1_1129652-1129689|NC_008699.1_1559068-1559105|NC_008699.1_4669432-4669469	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|102aa|up_9|NC_008699.1_227623_227929_-,NA|176aa|up_7|NC_008699.1_230365_230893_-,NA|92aa|down_5|NC_008699.1_244241_244517_+	NA|102aa|up_9|NC_008699.1_227623_227929_-	NA	NA|718aa|up_8|NC_008699.1_228225_230379_+	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|176aa|up_7|NC_008699.1_230365_230893_-	NA	NA|233aa|up_6|NC_008699.1_231041_231740_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|566aa|up_5|NC_008699.1_231837_233535_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|310aa|up_4|NC_008699.1_233537_234467_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|449aa|up_3|NC_008699.1_234533_235880_-	pfam13458, Peripla_BP_6, Periplasmic binding protein	NA|212aa|up_2|NC_008699.1_236112_236748_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|203aa|up_1|NC_008699.1_236744_237353_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|394aa|up_0|NC_008699.1_237462_238644_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|293aa|down_0|NC_008699.1_238855_239734_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|159aa|down_1|NC_008699.1_239724_240201_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|792aa|down_2|NC_008699.1_240197_242573_+	TIGR02416, Carbon_monoxide_dehydrogenase_large_chain, carbon-monoxide dehydrogenase, large subunit	NA|198aa|down_3|NC_008699.1_242553_243147_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|319aa|down_4|NC_008699.1_243143_244100_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|92aa|down_5|NC_008699.1_244241_244517_+	NA	NA|292aa|down_6|NC_008699.1_244516_245392_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|182aa|down_7|NC_008699.1_245388_245934_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|784aa|down_8|NC_008699.1_245993_248345_+	TIGR02416, Carbon_monoxide_dehydrogenase_large_chain, carbon-monoxide dehydrogenase, large subunit	NA|300aa|down_9|NC_008699.1_248341_249241_+	pfam13478, XdhC_C, XdhC Rossmann domain
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	4	263408-263492	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCGGCCGGCCGATGAAACTCGAC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|223aa|up_6|NC_008699.1_256881_257550_+,NA	NA|390aa|up_9|NC_008699.1_254150_255320_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|198aa|up_8|NC_008699.1_255335_255929_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|226aa|up_7|NC_008699.1_255983_256661_+	TIGR01915, F420-dependent_NADP_reductase, NADPH-dependent F420 reductase	NA|223aa|up_6|NC_008699.1_256881_257550_+	NA	NA|228aa|up_5|NC_008699.1_257633_258317_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|168aa|up_4|NC_008699.1_258373_258877_+	pfam09656, PGPGW, Putative transmembrane protein (PGPGW)	NA|600aa|up_3|NC_008699.1_259105_260905_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|166aa|up_2|NC_008699.1_260988_261486_-	cd02236, cupin_CV2614-like, Chromobacterium violaceum CV2614 and related proteins, cupin domain	NA|315aa|up_1|NC_008699.1_261622_262567_+	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|273aa|up_0|NC_008699.1_262563_263382_+	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|1114aa|down_0|NC_008699.1_263533_266875_+	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|1109aa|down_1|NC_008699.1_266880_270207_+	TIGR00609, RecBCD_enzyme_subunit_RecB, exodeoxyribonuclease V, beta subunit	NA|582aa|down_2|NC_008699.1_270208_271954_+	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit	NA|208aa|down_3|NC_008699.1_272007_272631_+	cd04887, ACT_MalLac-Enz, ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains	NA|435aa|down_4|NC_008699.1_272736_274041_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|486aa|down_5|NC_008699.1_274118_275576_-	TIGR01955, Transcriptional_activator_rfaH	NA|148aa|down_6|NC_008699.1_275611_276055_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|306aa|down_7|NC_008699.1_276110_277028_+	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase	NA|445aa|down_8|NC_008699.1_277134_278469_+	cd06174, MFS, Major Facilitator Superfamily	NA|510aa|down_9|NC_008699.1_278930_280460_+	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	5	295604-295702	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	CGCCCACGGGGCTGACCGTCCGAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|166aa|up_9|NC_008699.1_282484_282982_+,NA|235aa|up_6|NC_008699.1_285055_285760_+,NA|57aa|down_2|NC_008699.1_297248_297419_+	NA|166aa|up_9|NC_008699.1_282484_282982_+	NA	NA|384aa|up_8|NC_008699.1_283043_284195_+	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown]	NA|233aa|up_7|NC_008699.1_284214_284913_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|235aa|up_6|NC_008699.1_285055_285760_+	NA	NA|580aa|up_5|NC_008699.1_285766_287506_-	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase	NA|750aa|up_4|NC_008699.1_287510_289760_-	PRK14511, PRK14511, malto-oligosyltrehalose synthase	NA|734aa|up_3|NC_008699.1_289764_291966_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|493aa|up_2|NC_008699.1_292122_293601_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|382aa|up_1|NC_008699.1_293626_294772_+	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|244aa|up_0|NC_008699.1_294847_295579_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|189aa|down_0|NC_008699.1_295783_296350_+	COG1514, LigT, 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]	NA|232aa|down_1|NC_008699.1_296356_297052_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|57aa|down_2|NC_008699.1_297248_297419_+	NA	NA|214aa|down_3|NC_008699.1_297538_298180_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|162aa|down_4|NC_008699.1_298299_298785_+	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein	NA|144aa|down_5|NC_008699.1_298808_299240_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|124aa|down_6|NC_008699.1_299302_299674_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|540aa|down_7|NC_008699.1_299701_301321_-	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain	NA|411aa|down_8|NC_008699.1_301390_302623_+	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|199aa|down_9|NC_008699.1_302654_303251_+	COG2936, COG2936, Predicted acyl esterases [General function prediction only]
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	6	297445-297530	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTTAACCGGGGATACCG	24	1	5	297469-297506|297469-297506|297469-297506|297469-297506|297469-297506	NC_008699.1_3858393-3858356|NC_008699.1_1129652-1129689|NC_008699.1_1559068-1559105|NC_008699.1_1768125-1768162|NC_008699.1_4669432-4669469	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|235aa|up_9|NC_008699.1_285055_285760_+,NA|57aa|up_0|NC_008699.1_297248_297419_+,NA	NA|235aa|up_9|NC_008699.1_285055_285760_+	NA	NA|580aa|up_8|NC_008699.1_285766_287506_-	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase	NA|750aa|up_7|NC_008699.1_287510_289760_-	PRK14511, PRK14511, malto-oligosyltrehalose synthase	NA|734aa|up_6|NC_008699.1_289764_291966_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|493aa|up_5|NC_008699.1_292122_293601_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|382aa|up_4|NC_008699.1_293626_294772_+	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|244aa|up_3|NC_008699.1_294847_295579_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|189aa|up_2|NC_008699.1_295783_296350_+	COG1514, LigT, 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]	NA|232aa|up_1|NC_008699.1_296356_297052_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|57aa|up_0|NC_008699.1_297248_297419_+	NA	NA|214aa|down_0|NC_008699.1_297538_298180_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|162aa|down_1|NC_008699.1_298299_298785_+	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein	NA|144aa|down_2|NC_008699.1_298808_299240_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|124aa|down_3|NC_008699.1_299302_299674_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|540aa|down_4|NC_008699.1_299701_301321_-	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain	NA|411aa|down_5|NC_008699.1_301390_302623_+	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|199aa|down_6|NC_008699.1_302654_303251_+	COG2936, COG2936, Predicted acyl esterases [General function prediction only]	NA|290aa|down_7|NC_008699.1_303598_304468_+	pfam00685, Sulfotransfer_1, Sulfotransferase domain	NA|90aa|down_8|NC_008699.1_304621_304891_+	pfam08962, DUF1876, Domain of unknown function (DUF1876)	NA|69aa|down_9|NC_008699.1_304959_305166_-	pfam08940, DUF1918, Domain of unknown function (DUF1918)
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	7	361176-361260	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	CGGTTTCCCCGGTTCACCGGGGA	23	1	5	361199-361237|361199-361237|361199-361237|361199-361237|361199-361237	NC_008699.1_4669470-4669432|NC_008699.1_4776364-4776326|NC_008699.1_504071-504109|NC_008699.1_1198831-1198869|NC_008699.1_4736318-4736280	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|291aa|up_1|NC_008699.1_359461_360334_+,NA	NA|695aa|up_9|NC_008699.1_351884_353969_-	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|258aa|up_8|NC_008699.1_354202_354976_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|215aa|up_7|NC_008699.1_354972_355617_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|287aa|up_6|NC_008699.1_355712_356573_-	TIGR02479, RNA_polymerase_sigma_factor_WhiG, RNA polymerase sigma factor, FliA/WhiG family	NA|257aa|up_5|NC_008699.1_356846_357617_+	TIGR02479, RNA_polymerase_sigma_factor_WhiG, RNA polymerase sigma factor, FliA/WhiG family	NA|301aa|up_4|NC_008699.1_357822_358725_+	TIGR02479, RNA_polymerase_sigma_factor_WhiG, RNA polymerase sigma factor, FliA/WhiG family	NA|52aa|up_3|NC_008699.1_358834_358990_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|155aa|up_2|NC_008699.1_358986_359451_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|291aa|up_1|NC_008699.1_359461_360334_+	NA	NA|248aa|up_0|NC_008699.1_360413_361157_+	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|226aa|down_0|NC_008699.1_361274_361952_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|258aa|down_1|NC_008699.1_362041_362815_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|204aa|down_2|NC_008699.1_362811_363423_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|202aa|down_3|NC_008699.1_363533_364139_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|392aa|down_4|NC_008699.1_364135_365311_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|140aa|down_5|NC_008699.1_365472_365892_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|435aa|down_6|NC_008699.1_365913_367218_-	PRK14853, nhaA, pH-dependent sodium/proton antiporter; Provisional	NA|665aa|down_7|NC_008699.1_367343_369338_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|535aa|down_8|NC_008699.1_369470_371075_-	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|121aa|down_9|NC_008699.1_371071_371434_-	pfam04341, DUF485, Protein of unknown function, DUF485
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	8	375273-375388	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	GCAACCGTTGGGGGCGCTCATTCGGTTACCTGCTCACCGCTGG	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA	NA|204aa|up_9|NC_008699.1_362811_363423_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|202aa|up_8|NC_008699.1_363533_364139_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|392aa|up_7|NC_008699.1_364135_365311_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|140aa|up_6|NC_008699.1_365472_365892_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|435aa|up_5|NC_008699.1_365913_367218_-	PRK14853, nhaA, pH-dependent sodium/proton antiporter; Provisional	NA|665aa|up_4|NC_008699.1_367343_369338_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|535aa|up_3|NC_008699.1_369470_371075_-	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|121aa|up_2|NC_008699.1_371071_371434_-	pfam04341, DUF485, Protein of unknown function, DUF485	NA|503aa|up_1|NC_008699.1_371695_373204_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|681aa|up_0|NC_008699.1_373203_375246_+	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|461aa|down_0|NC_008699.1_375403_376786_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|839aa|down_1|NC_008699.1_376782_379299_+	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional	NA|126aa|down_2|NC_008699.1_379295_379673_+	cd03529, Rieske_NirD, Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium	NA|373aa|down_3|NC_008699.1_379669_380788_+	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated	NA|502aa|down_4|NC_008699.1_380813_382319_-	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|126aa|down_5|NC_008699.1_382327_382705_-	cd17432, MFS_GLUT_Class2, Class 2 Glucose transporters (GLUTs) of the Major Facilitator Superfamily	NA|250aa|down_6|NC_008699.1_382701_383451_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|372aa|down_7|NC_008699.1_383447_384563_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|262aa|down_8|NC_008699.1_384576_385362_-	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily	NA|276aa|down_9|NC_008699.1_385392_386220_-	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	9	455983-456067	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	CGGTTTCCCCGGTTCACCGGGGA	23	1	5	456006-456044|456006-456044|456006-456044|456006-456044|456006-456044	NC_008699.1_4669470-4669432|NC_008699.1_4776364-4776326|NC_008699.1_504071-504109|NC_008699.1_1198831-1198869|NC_008699.1_4736318-4736280	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|60aa|up_9|NC_008699.1_449485_449665_+,NA|145aa|up_8|NC_008699.1_449691_450126_-,NA|119aa|up_2|NC_008699.1_454001_454358_+,NA|136aa|up_1|NC_008699.1_454354_454762_+,NA	NA|60aa|up_9|NC_008699.1_449485_449665_+	NA	NA|145aa|up_8|NC_008699.1_449691_450126_-	NA	NA|173aa|up_7|NC_008699.1_450124_450643_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|367aa|up_6|NC_008699.1_450722_451823_+	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	NA|131aa|up_5|NC_008699.1_451815_452208_-	pfam01638, HxlR, HxlR-like helix-turn-helix	NA|286aa|up_4|NC_008699.1_452286_453144_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|295aa|up_3|NC_008699.1_453118_454003_-	TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific	NA|119aa|up_2|NC_008699.1_454001_454358_+	NA	NA|136aa|up_1|NC_008699.1_454354_454762_+	NA	NA|393aa|up_0|NC_008699.1_454783_455962_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|374aa|down_0|NC_008699.1_456144_457266_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|271aa|down_1|NC_008699.1_457321_458134_+	PRK07814, PRK07814, SDR family oxidoreductase	NA|367aa|down_2|NC_008699.1_458143_459244_+	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain	NA|148aa|down_3|NC_008699.1_459233_459677_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|306aa|down_4|NC_008699.1_459673_460591_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|196aa|down_5|NC_008699.1_460687_461275_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|293aa|down_6|NC_008699.1_461271_462150_+	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|360aa|down_7|NC_008699.1_462412_463492_+	cd13545, PBP2_TbpA, Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily	NA|545aa|down_8|NC_008699.1_463525_465160_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|333aa|down_9|NC_008699.1_465159_466158_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	10	482126-482210	10	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTGAACCGGGGAAACC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA	NA|238aa|up_9|NC_008699.1_473579_474293_+	pfam16640, Big_3_5, Bacterial Ig-like domain (group 3)	NA|184aa|up_8|NC_008699.1_474308_474860_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|682aa|up_7|NC_008699.1_475119_477165_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|202aa|up_6|NC_008699.1_477316_477922_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|271aa|up_5|NC_008699.1_477977_478790_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|129aa|up_4|NC_008699.1_478786_479173_+	pfam02152, FolB, Dihydroneopterin aldolase	NA|190aa|up_3|NC_008699.1_479165_479735_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|164aa|up_2|NC_008699.1_479742_480234_+	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|202aa|up_1|NC_008699.1_480243_480849_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|369aa|up_0|NC_008699.1_481006_482113_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|329aa|down_0|NC_008699.1_482220_483207_-	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter	NA|218aa|down_1|NC_008699.1_483312_483966_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|255aa|down_2|NC_008699.1_483971_484736_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|317aa|down_3|NC_008699.1_484788_485739_+	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold	NA|371aa|down_4|NC_008699.1_485731_486844_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|363aa|down_5|NC_008699.1_486893_487982_+	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown]	NA|305aa|down_6|NC_008699.1_487978_488893_+	TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB	NA|305aa|down_7|NC_008699.1_489136_490051_+	COG5495, COG5495, Uncharacterized conserved protein [Function unknown]	NA|335aa|down_8|NC_008699.1_490047_491052_+	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|140aa|down_9|NC_008699.1_491051_491471_+	pfam02261, Asp_decarbox, Aspartate decarboxylase
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	11	520013-520098	11	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	CGGTTTCCCCGGTTCACCGGGGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|34aa|up_4|NC_008699.1_515311_515413_+,NA|385aa|up_1|NC_008699.1_517792_518947_-,NA	NA|317aa|up_9|NC_008699.1_510530_511481_+	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|268aa|up_8|NC_008699.1_511591_512395_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|323aa|up_7|NC_008699.1_512431_513400_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|395aa|up_6|NC_008699.1_513594_514779_+	cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes	NA|68aa|up_5|NC_008699.1_514975_515179_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|34aa|up_4|NC_008699.1_515311_515413_+	NA	NA|360aa|up_3|NC_008699.1_515439_516519_+	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|376aa|up_2|NC_008699.1_516511_517639_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|385aa|up_1|NC_008699.1_517792_518947_-	NA	NA|267aa|up_0|NC_008699.1_519077_519878_-	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family	NA|513aa|down_0|NC_008699.1_521043_522582_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|82aa|down_1|NC_008699.1_522578_522824_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|221aa|down_2|NC_008699.1_523025_523688_+	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|431aa|down_3|NC_008699.1_523684_524977_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|311aa|down_4|NC_008699.1_524985_525918_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|553aa|down_5|NC_008699.1_526009_527668_+	COG0007, CysG, Uroporphyrinogen-III methylase [Coenzyme metabolism]	NA|334aa|down_6|NC_008699.1_527692_528694_+	PRK09283, PRK09283, porphobilinogen synthase	NA|390aa|down_7|NC_008699.1_528933_530103_-	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]	NA|446aa|down_8|NC_008699.1_530332_531670_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|227aa|down_9|NC_008699.1_531682_532363_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	12	546946-547031	12	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTGAACCGGGGAAACCG	24	1	5	546970-547007|546970-547007|546970-547007|546970-547007|546970-547007	NC_008699.1_1198869-1198832|NC_008699.1_4754020-4753983|NC_008699.1_1129652-1129689|NC_008699.1_1559068-1559105|NC_008699.1_4669432-4669469	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA|212aa|down_1|NC_008699.1_548377_549013_+	NA|90aa|up_9|NC_008699.1_536910_537180_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|292aa|up_8|NC_008699.1_537408_538284_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|337aa|up_7|NC_008699.1_538328_539339_+	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|319aa|up_6|NC_008699.1_539335_540292_+	PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional	NA|538aa|up_5|NC_008699.1_540288_541902_+	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|622aa|up_4|NC_008699.1_541944_543810_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|399aa|up_3|NC_008699.1_543867_545064_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|146aa|up_2|NC_008699.1_545121_545559_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|222aa|up_1|NC_008699.1_545624_546290_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|212aa|up_0|NC_008699.1_546288_546924_+	pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain	NA|423aa|down_0|NC_008699.1_547043_548312_-	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|212aa|down_1|NC_008699.1_548377_549013_+	NA	NA|310aa|down_2|NC_008699.1_549034_549964_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|230aa|down_3|NC_008699.1_550119_550809_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|120aa|down_4|NC_008699.1_551158_551518_+	PRK07928, PRK07928, NADH dehydrogenase subunit A; Validated	NA|185aa|down_5|NC_008699.1_551531_552086_+	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB	NA|251aa|down_6|NC_008699.1_552082_552835_+	PRK07785, PRK07785, NADH dehydrogenase subunit C; Provisional	NA|447aa|down_7|NC_008699.1_552834_554175_+	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D	NA|264aa|down_8|NC_008699.1_554171_554963_+	PRK07539, PRK07539, NADH-quinone oxidoreductase subunit NuoE	NA|437aa|down_9|NC_008699.1_554971_556282_+	TIGR01959, NADH-quinone_oxidoreductase_subunit_F, NADH-quinone oxidoreductase, F subunit
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	13	705624-705708	13	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTGAACCGGGGAAACCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|297aa|up_7|NC_008699.1_695825_696716_-,NA|323aa|down_4|NC_008699.1_709746_710715_-	NA|523aa|up_9|NC_008699.1_693163_694732_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|392aa|up_8|NC_008699.1_694653_695829_-	PLN02856, PLN02856, fumarylacetoacetase	NA|297aa|up_7|NC_008699.1_695825_696716_-	NA	NA|405aa|up_6|NC_008699.1_696777_697992_+	COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|289aa|up_5|NC_008699.1_698008_698875_+	cd19100, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|355aa|up_4|NC_008699.1_698913_699978_-	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|101aa|up_3|NC_008699.1_700110_700413_+	pfam08922, DUF1905, Domain of unknown function (DUF1905)	NA|283aa|up_2|NC_008699.1_700423_701272_-	COG5473, COG5473, Predicted integral membrane protein [Function unknown]	NA|794aa|up_1|NC_008699.1_701440_703822_+	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|352aa|up_0|NC_008699.1_703881_704937_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|393aa|down_0|NC_008699.1_705813_706992_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|467aa|down_1|NC_008699.1_707009_708410_+	PRK07869, PRK07869, amidase; Provisional	NA|246aa|down_2|NC_008699.1_708399_709137_-	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|57aa|down_3|NC_008699.1_709508_709679_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|323aa|down_4|NC_008699.1_709746_710715_-	NA	NA|134aa|down_5|NC_008699.1_710747_711149_+	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|128aa|down_6|NC_008699.1_711145_711529_+	cd03453, SAV4209_like, SAV4209_like	NA|341aa|down_7|NC_008699.1_711521_712544_+	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|141aa|down_8|NC_008699.1_712564_712987_-	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|344aa|down_9|NC_008699.1_712983_714015_-	PRK09358, PRK09358, adenosine deaminase; Provisional
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	14	1235754-1235838	14	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	CGGTTTCCCCGGTTCACCGGGGA	23	1	5	1235777-1235815|1235777-1235815|1235777-1235815|1235777-1235815|1235777-1235815	NC_008699.1_4669470-4669432|NC_008699.1_4776364-4776326|NC_008699.1_504071-504109|NC_008699.1_1198831-1198869|NC_008699.1_4736318-4736280	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|77aa|up_9|NC_008699.1_1228525_1228756_+,NA|97aa|up_6|NC_008699.1_1229447_1229738_+,NA|112aa|up_3|NC_008699.1_1232105_1232441_+,NA	NA|77aa|up_9|NC_008699.1_1228525_1228756_+	NA	NA|105aa|up_8|NC_008699.1_1228745_1229060_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|125aa|up_7|NC_008699.1_1229065_1229440_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|97aa|up_6|NC_008699.1_1229447_1229738_+	NA	NA|424aa|up_5|NC_008699.1_1229808_1231080_+	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|303aa|up_4|NC_008699.1_1231159_1232068_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|112aa|up_3|NC_008699.1_1232105_1232441_+	NA	NA|75aa|up_2|NC_008699.1_1232805_1233030_-	pfam04255, DUF433, Protein of unknown function (DUF433)	NA|581aa|up_1|NC_008699.1_1233071_1234814_+	pfam04294, VanW, VanW like protein	NA|282aa|up_0|NC_008699.1_1234885_1235731_+	pfam01674, Lipase_2, Lipase (class 2)	NA|452aa|down_0|NC_008699.1_1235871_1237227_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|306aa|down_1|NC_008699.1_1237501_1238419_-	pfam04199, Cyclase, Putative cyclase	NA|352aa|down_2|NC_008699.1_1238589_1239645_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|289aa|down_3|NC_008699.1_1239674_1240541_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|174aa|down_4|NC_008699.1_1240537_1241059_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|772aa|down_5|NC_008699.1_1241055_1243371_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|422aa|down_6|NC_008699.1_1243525_1244791_+	PRK02399, PRK02399, hypothetical protein; Provisional	NA|418aa|down_7|NC_008699.1_1245230_1246484_+	pfam05853, BKACE, beta-keto acid cleavage enzyme	NA|207aa|down_8|NC_008699.1_1246608_1247229_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|242aa|down_9|NC_008699.1_1247422_1248148_+	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	15	1283015-1283099	15	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTGAACCGGGGAAACCG	23	1	1	1283038-1283076	NC_008699.1_504109-504071	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|138aa|up_6|NC_008699.1_1277860_1278274_+,NA|113aa|up_0|NC_008699.1_1282649_1282988_+,NA|159aa|down_2|NC_008699.1_1284628_1285105_+,NA|225aa|down_5|NC_008699.1_1287100_1287775_+,NA|438aa|down_7|NC_008699.1_1289070_1290384_-,NA|122aa|down_8|NC_008699.1_1290411_1290777_-	NA|355aa|up_9|NC_008699.1_1275727_1276792_+	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed	NA|244aa|up_8|NC_008699.1_1276793_1277525_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|101aa|up_7|NC_008699.1_1277531_1277834_+	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain	NA|138aa|up_6|NC_008699.1_1277860_1278274_+	NA	NA|252aa|up_5|NC_008699.1_1278318_1279074_+	cd06904, M14_MpaA-like, Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A and related proteins	NA|265aa|up_4|NC_008699.1_1279128_1279923_-	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional	NA|259aa|up_3|NC_008699.1_1279977_1280754_-	COG3327, PaaX, Phenylacetic acid-responsive transcriptional repressor [Transcription]	NA|56aa|up_2|NC_008699.1_1280896_1281064_+	pfam11314, DUF3117, Protein of unknown function (DUF3117)	NA|528aa|up_1|NC_008699.1_1281069_1282653_+	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains	NA|113aa|up_0|NC_008699.1_1282649_1282988_+	NA	NA|217aa|down_0|NC_008699.1_1283110_1283761_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|209aa|down_1|NC_008699.1_1284005_1284632_+	PRK09647, PRK09647, RNA polymerase sigma factor SigE; Reviewed	NA|159aa|down_2|NC_008699.1_1284628_1285105_+	NA	NA|472aa|down_3|NC_008699.1_1285151_1286567_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|82aa|down_4|NC_008699.1_1286718_1286964_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|225aa|down_5|NC_008699.1_1287100_1287775_+	NA	NA|438aa|down_6|NC_008699.1_1287778_1289092_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|438aa|down_7|NC_008699.1_1289070_1290384_-	NA	NA|122aa|down_8|NC_008699.1_1290411_1290777_-	NA	NA|484aa|down_9|NC_008699.1_1290898_1292350_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	16	1306911-1307000	16	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTGAACCGGGGAAACCGGAAC	28	1	6	1306939-1306972|1306939-1306972|1306939-1306972|1306939-1306972|1306939-1306972|1306939-1306972	NC_008699.1_504105-504072|NC_008699.1_2130493-2130526|NC_008699.1_1129656-1129689|NC_008699.1_1559072-1559105|NC_008699.1_3397176-3397209|NC_008699.1_4669436-4669469	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|73aa|up_8|NC_008699.1_1294387_1294606_+,NA|174aa|down_8|NC_008699.1_1314297_1314819_+	NA|543aa|up_9|NC_008699.1_1292748_1294377_+	cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17	NA|73aa|up_8|NC_008699.1_1294387_1294606_+	NA	NA|161aa|up_7|NC_008699.1_1294590_1295073_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|160aa|up_6|NC_008699.1_1295072_1295552_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|268aa|up_5|NC_008699.1_1295670_1296474_+	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase	NA|1660aa|up_4|NC_008699.1_1296449_1301429_+	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|560aa|up_3|NC_008699.1_1301596_1303276_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|620aa|up_2|NC_008699.1_1303272_1305132_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|467aa|up_1|NC_008699.1_1305287_1306688_+	PRK12470, PRK12470, amidase; Provisional	NA|66aa|up_0|NC_008699.1_1306687_1306885_+	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A	NA|296aa|down_0|NC_008699.1_1307022_1307910_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|197aa|down_1|NC_008699.1_1307959_1308550_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|316aa|down_2|NC_008699.1_1308548_1309496_+	PRK07201, PRK07201, SDR family oxidoreductase	NA|254aa|down_3|NC_008699.1_1309597_1310359_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|332aa|down_4|NC_008699.1_1310488_1311484_-	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|309aa|down_5|NC_008699.1_1311577_1312504_+	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|235aa|down_6|NC_008699.1_1312521_1313226_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|305aa|down_7|NC_008699.1_1313225_1314140_+	cd04863, MtLigD_Pol_like, MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD	NA|174aa|down_8|NC_008699.1_1314297_1314819_+	NA	NA|204aa|down_9|NC_008699.1_1315047_1315659_+	cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	17	1574651-1574736	17	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTGAACCGGGGAAACCG	24	1	13	1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712|1574675-1574712	NC_008699.1_1129652-1129689|NC_008699.1_1559068-1559105|NC_008699.1_4669432-4669469|NC_008699.1_314222-314259|NC_008699.1_4776326-4776363|NC_008699.1_469373-469336|NC_008699.1_2130489-2130526|NC_008699.1_4736280-4736317|NC_008699.1_4943217-4943254|NC_008699.1_504109-504072|NC_008699.1_1198869-1198832|NC_008699.1_3858393-3858356|NC_008699.1_4754020-4753983	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|180aa|up_7|NC_008699.1_1566839_1567379_+,NA	NA|341aa|up_9|NC_008699.1_1564501_1565524_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|441aa|up_8|NC_008699.1_1565520_1566843_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|180aa|up_7|NC_008699.1_1566839_1567379_+	NA	NA|114aa|up_6|NC_008699.1_1567375_1567717_+	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|333aa|up_5|NC_008699.1_1567826_1568825_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|270aa|up_4|NC_008699.1_1568824_1569634_+	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|473aa|up_3|NC_008699.1_1569721_1571140_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|472aa|up_2|NC_008699.1_1571136_1572552_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|218aa|up_1|NC_008699.1_1572548_1573202_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|439aa|up_0|NC_008699.1_1573277_1574594_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|488aa|down_0|NC_008699.1_1574953_1576417_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|281aa|down_1|NC_008699.1_1576434_1577277_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|174aa|down_2|NC_008699.1_1577273_1577795_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|804aa|down_3|NC_008699.1_1577799_1580211_+	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase	NA|217aa|down_4|NC_008699.1_1580207_1580858_+	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG)	NA|469aa|down_5|NC_008699.1_1581000_1582407_+	PRK07486, PRK07486, amidase; Provisional	NA|82aa|down_6|NC_008699.1_1583391_1583637_-	pfam10944, DUF2630, Protein of unknown function (DUF2630)	NA|222aa|down_7|NC_008699.1_1583772_1584438_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|472aa|down_8|NC_008699.1_1584484_1585900_+	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases	NA|707aa|down_9|NC_008699.1_1585896_1588017_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	18	1580880-1580965	18	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	CGGTTTCCCCGGTTCACCGGGGAA	24	1	6	1580904-1580941|1580904-1580941|1580904-1580941|1580904-1580941|1580904-1580941|1580904-1580941	NC_008699.1_1129689-1129652|NC_008699.1_1559105-1559068|NC_008699.1_4669469-4669432|NC_008699.1_314259-314222|NC_008699.1_469336-469373|NC_008699.1_4776363-4776326	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA|232aa|down_6|NC_008699.1_1590145_1590841_+	NA|270aa|up_9|NC_008699.1_1568824_1569634_+	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|473aa|up_8|NC_008699.1_1569721_1571140_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|472aa|up_7|NC_008699.1_1571136_1572552_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|218aa|up_6|NC_008699.1_1572548_1573202_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|439aa|up_5|NC_008699.1_1573277_1574594_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|488aa|up_4|NC_008699.1_1574953_1576417_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|281aa|up_3|NC_008699.1_1576434_1577277_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|174aa|up_2|NC_008699.1_1577273_1577795_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|804aa|up_1|NC_008699.1_1577799_1580211_+	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase	NA|217aa|up_0|NC_008699.1_1580207_1580858_+	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG)	NA|469aa|down_0|NC_008699.1_1581000_1582407_+	PRK07486, PRK07486, amidase; Provisional	NA|82aa|down_1|NC_008699.1_1583391_1583637_-	pfam10944, DUF2630, Protein of unknown function (DUF2630)	NA|222aa|down_2|NC_008699.1_1583772_1584438_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|472aa|down_3|NC_008699.1_1584484_1585900_+	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases	NA|707aa|down_4|NC_008699.1_1585896_1588017_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|650aa|down_5|NC_008699.1_1588093_1590043_+	pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase	NA|232aa|down_6|NC_008699.1_1590145_1590841_+	NA	NA|225aa|down_7|NC_008699.1_1590867_1591542_+	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|232aa|down_8|NC_008699.1_1591620_1592316_-	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|134aa|down_9|NC_008699.1_1592424_1592826_+	pfam06172, Cupin_5, Cupin superfamily (DUF985)
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	19	1892423-1892507	19	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTGAACCGGGGAAACCG	23	1	5	1892446-1892484|1892446-1892484|1892446-1892484|1892446-1892484|1892446-1892484	NC_008699.1_4669432-4669470|NC_008699.1_4776326-4776364|NC_008699.1_504109-504071|NC_008699.1_1198869-1198831|NC_008699.1_4736280-4736318	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|61aa|up_9|NC_008699.1_1883214_1883397_+,NA|193aa|up_5|NC_008699.1_1886981_1887560_-,NA|84aa|up_0|NC_008699.1_1892143_1892395_+,NA|80aa|down_4|NC_008699.1_1898527_1898767_+,NA|256aa|down_5|NC_008699.1_1898814_1899582_+	NA|61aa|up_9|NC_008699.1_1883214_1883397_+	NA	NA|175aa|up_8|NC_008699.1_1883444_1883969_+	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|359aa|up_7|NC_008699.1_1884074_1885151_+	pfam14378, PAP2_3, PAP2 superfamily	NA|575aa|up_6|NC_008699.1_1885234_1886959_+	pfam09594, GT87, Glycosyltransferase family 87	NA|193aa|up_5|NC_008699.1_1886981_1887560_-	NA	NA|607aa|up_4|NC_008699.1_1887549_1889370_-	pfam13229, Beta_helix, Right handed beta helix region	NA|352aa|up_3|NC_008699.1_1889511_1890567_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|311aa|up_2|NC_008699.1_1890651_1891584_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|234aa|up_1|NC_008699.1_1891558_1892260_-	pfam06108, DUF952, Protein of unknown function (DUF952)	NA|84aa|up_0|NC_008699.1_1892143_1892395_+	NA	NA|225aa|down_0|NC_008699.1_1892571_1893246_-	PRK03298, PRK03298, endonuclease NucS	NA|516aa|down_1|NC_008699.1_1893312_1894860_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|606aa|down_2|NC_008699.1_1895031_1896849_+	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|494aa|down_3|NC_008699.1_1896988_1898470_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|80aa|down_4|NC_008699.1_1898527_1898767_+	NA	NA|256aa|down_5|NC_008699.1_1898814_1899582_+	NA	NA|636aa|down_6|NC_008699.1_1899775_1901683_-	cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1	NA|282aa|down_7|NC_008699.1_1901685_1902531_+	pfam03537, Glyco_hydro_114, Glycoside-hydrolase family GH114	NA|268aa|down_8|NC_008699.1_1902524_1903328_+	PRK10673, PRK10673, esterase	NA|181aa|down_9|NC_008699.1_1903375_1903918_-	pfam11706, zf-CGNR, CGNR zinc finger
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	20	2015565-2015651	20	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTTCCCCGGTGAACCGGGGAAACCG	25	1	12	2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626|2015590-2015626	NC_008699.1_1129652-1129688|NC_008699.1_1559068-1559104|NC_008699.1_4669432-4669468|NC_008699.1_469373-469337|NC_008699.1_4776326-4776362|NC_008699.1_504109-504073|NC_008699.1_1198869-1198833|NC_008699.1_3858393-3858357|NC_008699.1_4754020-4753984|NC_008699.1_2130489-2130525|NC_008699.1_4736280-4736316|NC_008699.1_4943217-4943253	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|105aa|up_7|NC_008699.1_2003394_2003709_-,NA	NA|113aa|up_9|NC_008699.1_2002016_2002355_+	pfam04237, YjbR, YjbR	NA|224aa|up_8|NC_008699.1_2002650_2003322_+	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|105aa|up_7|NC_008699.1_2003394_2003709_-	NA	NA|488aa|up_6|NC_008699.1_2003854_2005318_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|703aa|up_5|NC_008699.1_2005415_2007524_+	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|834aa|up_4|NC_008699.1_2007811_2010313_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|285aa|up_3|NC_008699.1_2010335_2011190_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|301aa|up_2|NC_008699.1_2011313_2012216_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|760aa|up_1|NC_008699.1_2012259_2014539_+	TIGR00361, Recombination_protein_2, DNA internalization-related competence protein ComEC/Rec2	NA|331aa|up_0|NC_008699.1_2014551_2015544_+	PRK07914, PRK07914, hypothetical protein; Reviewed	NA|87aa|down_0|NC_008699.1_2015819_2016080_-	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|319aa|down_1|NC_008699.1_2016195_2017152_-	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|636aa|down_2|NC_008699.1_2017232_2019140_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|304aa|down_3|NC_008699.1_2019139_2020051_+	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase	NA|219aa|down_4|NC_008699.1_2020068_2020725_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|614aa|down_5|NC_008699.1_2020809_2022651_+	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|209aa|down_6|NC_008699.1_2022797_2023424_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|517aa|down_7|NC_008699.1_2023435_2024986_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|1146aa|down_8|NC_008699.1_2025001_2028439_+	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|431aa|down_9|NC_008699.1_2028438_2029731_+	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	21	2155124-2155208	21	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTGAACCGGGGAAACC	23	1	6	2155147-2155185|2155147-2155185|2155147-2155185|2155147-2155185|2155147-2155185|2155147-2155185	NC_008699.1_1129651-1129689|NC_008699.1_1559067-1559105|NC_008699.1_4669431-4669469|NC_008699.1_469374-469336|NC_008699.1_314221-314259|NC_008699.1_4776325-4776363	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|235aa|up_9|NC_008699.1_2145857_2146562_-,NA|137aa|up_8|NC_008699.1_2146782_2147193_+,NA	NA|235aa|up_9|NC_008699.1_2145857_2146562_-	NA	NA|137aa|up_8|NC_008699.1_2146782_2147193_+	NA	NA|284aa|up_7|NC_008699.1_2147197_2148049_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|224aa|up_6|NC_008699.1_2148056_2148728_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|509aa|up_5|NC_008699.1_2148712_2150239_-	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|126aa|up_4|NC_008699.1_2150183_2150561_-	pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3	NA|522aa|up_3|NC_008699.1_2150725_2152291_+	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|182aa|up_2|NC_008699.1_2152287_2152833_-	pfam01106, NifU, NifU-like domain	NA|649aa|up_1|NC_008699.1_2152829_2154776_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|72aa|up_0|NC_008699.1_2154772_2154988_-	pfam04023, FeoA, FeoA domain	NA|107aa|down_0|NC_008699.1_2155225_2155546_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|378aa|down_1|NC_008699.1_2155597_2156731_+	COG3323, COG3323, Uncharacterized protein conserved in bacteria [Function unknown]	NA|248aa|down_2|NC_008699.1_2156764_2157508_+	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	NA|402aa|down_3|NC_008699.1_2157504_2158710_+	PRK07238, PRK07238, bifunctional RNase H/acid phosphatase; Provisional	NA|252aa|down_4|NC_008699.1_2158831_2159587_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|483aa|down_5|NC_008699.1_2159605_2161054_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|407aa|down_6|NC_008699.1_2161202_2162423_+	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|827aa|down_7|NC_008699.1_2162400_2164881_-	cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|354aa|down_8|NC_008699.1_2164922_2165984_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|519aa|down_9|NC_008699.1_2165980_2167537_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	22	2525300-2525384	22	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	GCACGCAGCGCGTGCGGCCTGTCGT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|214aa|up_6|NC_008699.1_2518162_2518804_+,NA|62aa|down_0|NC_008699.1_2525400_2525586_-	NA|340aa|up_9|NC_008699.1_2515218_2516238_-	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|402aa|up_8|NC_008699.1_2516219_2517425_-	PRK08367, porA, pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed	NA|191aa|up_7|NC_008699.1_2517417_2517990_-	TIGR02175, Pyruvate_synthase_subunit_PorC, 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family	NA|214aa|up_6|NC_008699.1_2518162_2518804_+	NA	NA|355aa|up_5|NC_008699.1_2518791_2519856_-	cd05284, arabinose_DH_like, D-arabinose dehydrogenase	NA|115aa|up_4|NC_008699.1_2520112_2520457_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|412aa|up_3|NC_008699.1_2520446_2521682_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|413aa|up_2|NC_008699.1_2521859_2523098_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|275aa|up_1|NC_008699.1_2523834_2524659_+	cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase:  is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate	NA|135aa|up_0|NC_008699.1_2524644_2525049_-	pfam04686, SsgA, Streptomyces sporulation and cell division protein, SsgA	NA|62aa|down_0|NC_008699.1_2525400_2525586_-	NA	NA|669aa|down_1|NC_008699.1_2525865_2527872_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|149aa|down_2|NC_008699.1_2527882_2528329_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|175aa|down_3|NC_008699.1_2528391_2528916_+	cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three  branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases	NA|260aa|down_4|NC_008699.1_2528912_2529692_+	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|207aa|down_5|NC_008699.1_2529784_2530405_+	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|388aa|down_6|NC_008699.1_2530429_2531593_-	PRK12677, PRK12677, xylose isomerase; Provisional	NA|377aa|down_7|NC_008699.1_2532003_2533134_+	cd19995, PBP1_ABC_xylose_binding-like, periplasmic xylose-like sugar-binding component of the ABC-type transport systems	NA|253aa|down_8|NC_008699.1_2533225_2533984_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|420aa|down_9|NC_008699.1_2533980_2535240_+	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	23	2576469-2576553	23	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTGAACCGGGGAAACCG	23	1	5	2576492-2576530|2576492-2576530|2576492-2576530|2576492-2576530|2576492-2576530	NC_008699.1_4669432-4669470|NC_008699.1_4776326-4776364|NC_008699.1_504109-504071|NC_008699.1_1198869-1198831|NC_008699.1_4736280-4736318	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA	NA|897aa|up_9|NC_008699.1_2566292_2568983_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|157aa|up_8|NC_008699.1_2569006_2569477_+	pfam03652, RuvX, Holliday junction resolvase	NA|398aa|up_7|NC_008699.1_2569477_2570671_+	pfam02618, YceG, YceG-like family	NA|271aa|up_6|NC_008699.1_2570705_2571518_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|243aa|up_5|NC_008699.1_2571514_2572243_+	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|393aa|up_4|NC_008699.1_2572282_2573461_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|170aa|up_3|NC_008699.1_2573499_2574009_+	PRK00131, aroK, shikimate kinase; Reviewed	NA|366aa|up_2|NC_008699.1_2574005_2575103_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|147aa|up_1|NC_008699.1_2575099_2575540_+	cd00466, DHQase_II, Dehydroquinase (DHQase), type II	NA|266aa|up_0|NC_008699.1_2575652_2576450_+	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|188aa|down_0|NC_008699.1_2576694_2577258_+	PRK00529, PRK00529, elongation factor P; Validated	NA|136aa|down_1|NC_008699.1_2577257_2577665_+	PRK00202, nusB, transcription antitermination factor NusB	NA|459aa|down_2|NC_008699.1_2577701_2579078_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|279aa|down_3|NC_008699.1_2579074_2579911_+	pfam06724, DUF1206, Domain of Unknown Function (DUF1206)	NA|440aa|down_4|NC_008699.1_2580026_2581346_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|344aa|down_5|NC_008699.1_2581357_2582389_+	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)	NA|490aa|down_6|NC_008699.1_2582617_2584087_+	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|432aa|down_7|NC_008699.1_2584228_2585524_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|335aa|down_8|NC_008699.1_2585552_2586557_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|319aa|down_9|NC_008699.1_2586571_2587528_+	PRK12354, PRK12354, carbamate kinase; Reviewed
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	24	2592707-2592808	24	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	CCACAGTGGGGGGCTTCGCCCCCCACACCCCCCGCG	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA|144aa|down_2|NC_008699.1_2597003_2597435_+	NA|440aa|up_9|NC_008699.1_2580026_2581346_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|344aa|up_8|NC_008699.1_2581357_2582389_+	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)	NA|490aa|up_7|NC_008699.1_2582617_2584087_+	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|432aa|up_6|NC_008699.1_2584228_2585524_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|335aa|up_5|NC_008699.1_2585552_2586557_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|319aa|up_4|NC_008699.1_2586571_2587528_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|205aa|up_3|NC_008699.1_2587675_2588290_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|325aa|up_2|NC_008699.1_2588286_2589261_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|433aa|up_1|NC_008699.1_2589257_2590556_+	PRK09357, pyrC, dihydroorotase; Validated	NA|379aa|up_0|NC_008699.1_2590552_2591689_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|356aa|down_0|NC_008699.1_2595121_2596189_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|274aa|down_1|NC_008699.1_2596185_2597007_+	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|144aa|down_2|NC_008699.1_2597003_2597435_+	NA	NA|107aa|down_3|NC_008699.1_2597543_2597864_+	COG0099, RpsM, Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]	NA|195aa|down_4|NC_008699.1_2597879_2598464_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|down_5|NC_008699.1_2598473_2598806_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|437aa|down_6|NC_008699.1_2598780_2600091_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|397aa|down_7|NC_008699.1_2600172_2601363_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|678aa|down_8|NC_008699.1_2601487_2603521_+	PRK14873, PRK14873, primosomal protein N'	NA|182aa|down_9|NC_008699.1_2603596_2604142_+	PRK00150, def, peptide deformylase; Reviewed
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	25	3379146-3379230	25	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTGAACCGGGGAAACCG	23	1	2	3379169-3379207|3379169-3379207	NC_008699.1_4669432-4669470|NC_008699.1_4776326-4776364	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|268aa|up_6|NC_008699.1_3371934_3372738_-,NA|82aa|up_0|NC_008699.1_3378782_3379028_-,NA	NA|202aa|up_9|NC_008699.1_3369699_3370305_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|293aa|up_8|NC_008699.1_3370301_3371180_+	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|233aa|up_7|NC_008699.1_3371224_3371923_-	COG3794, PetE, Plastocyanin [Energy production and conversion]	NA|268aa|up_6|NC_008699.1_3371934_3372738_-	NA	NA|249aa|up_5|NC_008699.1_3372747_3373494_-	COG1950, COG1950, Predicted membrane protein [Function unknown]	NA|454aa|up_4|NC_008699.1_3373705_3375067_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|743aa|up_3|NC_008699.1_3375063_3377292_-	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	NA|92aa|up_2|NC_008699.1_3377569_3377845_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|223aa|up_1|NC_008699.1_3378104_3378773_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|82aa|up_0|NC_008699.1_3378782_3379028_-	NA	NA|562aa|down_0|NC_008699.1_3379233_3380919_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|256aa|down_1|NC_008699.1_3381008_3381776_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|319aa|down_2|NC_008699.1_3381772_3382729_+	TIGR03828, pfkB, 1-phosphofructokinase	NA|683aa|down_3|NC_008699.1_3382732_3384781_+	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|86aa|down_4|NC_008699.1_3384818_3385076_+	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|325aa|down_5|NC_008699.1_3385079_3386054_-	pfam16327, CcmF_C, Cytochrome c-type biogenesis protein CcmF C-terminal	NA|311aa|down_6|NC_008699.1_3386050_3386983_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|290aa|down_7|NC_008699.1_3387003_3387873_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|163aa|down_8|NC_008699.1_3387859_3388348_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|939aa|down_9|NC_008699.1_3388520_3391337_-	PRK05306, infB, translation initiation factor IF-2; Validated
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	26	3655170-3655255	26	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTGAACCGGGGAAACCG	24	1	5	3655194-3655231|3655194-3655231|3655194-3655231|3655194-3655231|3655194-3655231	NC_008699.1_504109-504072|NC_008699.1_1129652-1129689|NC_008699.1_1559068-1559105|NC_008699.1_2130489-2130526|NC_008699.1_4669432-4669469	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|101aa|up_8|NC_008699.1_3645626_3645929_-,NA|109aa|down_8|NC_008699.1_3665659_3665986_+,NA|77aa|down_9|NC_008699.1_3665975_3666206_+	NA|446aa|up_9|NC_008699.1_3644275_3645613_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|101aa|up_8|NC_008699.1_3645626_3645929_-	NA	NA|753aa|up_7|NC_008699.1_3646043_3648302_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|216aa|up_6|NC_008699.1_3648330_3648978_+	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|531aa|up_5|NC_008699.1_3648977_3650570_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|179aa|up_4|NC_008699.1_3650648_3651185_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|339aa|up_3|NC_008699.1_3651227_3652244_-	cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE	NA|367aa|up_2|NC_008699.1_3652240_3653341_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|400aa|up_1|NC_008699.1_3653348_3654548_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|153aa|up_0|NC_008699.1_3654627_3655086_-	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2	NA|372aa|down_0|NC_008699.1_3655265_3656381_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|517aa|down_1|NC_008699.1_3656399_3657950_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|85aa|down_2|NC_008699.1_3658047_3658302_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_3|NC_008699.1_3658333_3658642_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1071aa|down_4|NC_008699.1_3658807_3662020_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|237aa|down_5|NC_008699.1_3662368_3663079_-	TIGR03936, radical_SAM-linked_protein, radical SAM-linked protein	NA|397aa|down_6|NC_008699.1_3663096_3664287_-	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|402aa|down_7|NC_008699.1_3664337_3665543_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|109aa|down_8|NC_008699.1_3665659_3665986_+	NA	NA|77aa|down_9|NC_008699.1_3665975_3666206_+	NA
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	27	3937368-3937453	27	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	GCGCGAGTTTCATCGGCCGGCCGA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA|150aa|down_2|NC_008699.1_3940349_3940799_-,NA|132aa|down_5|NC_008699.1_3942389_3942785_-	NA|281aa|up_9|NC_008699.1_3926043_3926886_+	PRK07832, PRK07832, SDR family oxidoreductase	NA|451aa|up_8|NC_008699.1_3926895_3928248_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|188aa|up_7|NC_008699.1_3928286_3928850_+	pfam04167, DUF402, Protein of unknown function (DUF402)	NA|377aa|up_6|NC_008699.1_3928869_3930000_+	PRK13517, PRK13517, glutamate--cysteine ligase	NA|363aa|up_5|NC_008699.1_3930068_3931157_-	PRK03352, PRK03352, DNA polymerase IV; Validated	NA|367aa|up_4|NC_008699.1_3931153_3932254_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|450aa|up_3|NC_008699.1_3932413_3933763_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|473aa|up_2|NC_008699.1_3933844_3935263_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|434aa|up_1|NC_008699.1_3935259_3936561_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|281aa|up_0|NC_008699.1_3936519_3937362_+	cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like sub-family 1	NA|511aa|down_0|NC_008699.1_3937553_3939086_+	pfam02129, Peptidase_S15, X-Pro dipeptidyl-peptidase (S15 family)	NA|421aa|down_1|NC_008699.1_3939105_3940368_+	pfam09992, NAGPA, Phosphodiester glycosidase	NA|150aa|down_2|NC_008699.1_3940349_3940799_-	NA	NA|189aa|down_3|NC_008699.1_3940855_3941422_+	cd10028, UDG-F2_TDG_MUG, Uracil DNA glycosylase family 2, includes thymine DNA glycosylase, mismatch-specific uracil DNA glycosylase and similar proteins	NA|307aa|down_4|NC_008699.1_3941459_3942380_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|132aa|down_5|NC_008699.1_3942389_3942785_-	NA	NA|438aa|down_6|NC_008699.1_3942923_3944237_-	cd05664, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|220aa|down_7|NC_008699.1_3944233_3944893_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|416aa|down_8|NC_008699.1_3945031_3946279_-	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|398aa|down_9|NC_008699.1_3946331_3947525_+	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	28	4117162-4117246	28	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTTAACCGGGGAAACCG	23	1	5	4117185-4117223|4117185-4117223|4117185-4117223|4117185-4117223|4117185-4117223	NC_008699.1_4669432-4669470|NC_008699.1_4776326-4776364|NC_008699.1_504109-504071|NC_008699.1_1198869-1198831|NC_008699.1_4736280-4736318	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|318aa|up_4|NC_008699.1_4112153_4113107_+,NA	NA|279aa|up_9|NC_008699.1_4108644_4109481_-	PRK09374, rplB, 50S ribosomal protein L2; Validated	NA|102aa|up_8|NC_008699.1_4109512_4109818_-	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|260aa|up_7|NC_008699.1_4109814_4110594_-	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|224aa|up_6|NC_008699.1_4110596_4111268_-	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|103aa|up_5|NC_008699.1_4111278_4111587_-	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|318aa|up_4|NC_008699.1_4112153_4113107_+	NA	NA|208aa|up_3|NC_008699.1_4113103_4113727_+	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|372aa|up_2|NC_008699.1_4113723_4114839_+	pfam14258, DUF4350, Domain of unknown function (DUF4350)	NA|333aa|up_1|NC_008699.1_4114835_4115834_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|431aa|up_0|NC_008699.1_4115844_4117137_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|332aa|down_0|NC_008699.1_4117256_4118252_-	pfam01944, SpoIIM, Stage II sporulation protein M	NA|270aa|down_1|NC_008699.1_4118308_4119118_+	COG1714, COG1714, Predicted membrane protein/domain [Function unknown]	NA|458aa|down_2|NC_008699.1_4119472_4120846_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|321aa|down_3|NC_008699.1_4121033_4121996_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|310aa|down_4|NC_008699.1_4122045_4122975_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|456aa|down_5|NC_008699.1_4123013_4124381_-	TIGR03356, BGL, beta-galactosidase	NA|352aa|down_6|NC_008699.1_4124428_4125484_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|249aa|down_7|NC_008699.1_4125443_4126190_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|162aa|down_8|NC_008699.1_4126352_4126838_+	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|448aa|down_9|NC_008699.1_4126843_4128187_+	PRK07046, PRK07046, aminotransferase; Validated
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	29	4406765-4406909	29	CRISPRCasFinder	no	csa3	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Type I-A	CGGCCCGACCACGTGGACAGCCCACCGCCCACCAGCGCCGAGC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|156aa|up_9|NC_008699.1_4397588_4398056_-,NA|117aa|up_8|NC_008699.1_4398045_4398396_-,NA|104aa|up_6|NC_008699.1_4399619_4399931_-,NA|159aa|up_0|NC_008699.1_4406274_4406751_+,NA|68aa|down_6|NC_008699.1_4416789_4416993_+	NA|156aa|up_9|NC_008699.1_4397588_4398056_-	NA	NA|117aa|up_8|NC_008699.1_4398045_4398396_-	NA	NA|405aa|up_7|NC_008699.1_4398408_4399623_-	pfam11981, DUF3482, Domain of unknown function (DUF3482)	NA|104aa|up_6|NC_008699.1_4399619_4399931_-	NA	NA|611aa|up_5|NC_008699.1_4400082_4401915_-	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	csa3|111aa|up_4|NC_008699.1_4402062_4402395_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|340aa|up_3|NC_008699.1_4402394_4403414_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|127aa|up_2|NC_008699.1_4403401_4403782_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|829aa|up_1|NC_008699.1_4403786_4406273_+	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|159aa|up_0|NC_008699.1_4406274_4406751_+	NA	NA|336aa|down_0|NC_008699.1_4406982_4407990_+	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|1001aa|down_1|NC_008699.1_4407986_4410989_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|594aa|down_2|NC_008699.1_4410985_4412767_+	PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional	NA|334aa|down_3|NC_008699.1_4412892_4413894_+	cd03328, MR_like_3, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3	NA|359aa|down_4|NC_008699.1_4413911_4414988_+	cd08230, glucose_DH, Glucose dehydrogenase	NA|603aa|down_5|NC_008699.1_4414984_4416793_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|68aa|down_6|NC_008699.1_4416789_4416993_+	NA	NA|418aa|down_7|NC_008699.1_4417110_4418364_+	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|327aa|down_8|NC_008699.1_4418402_4419383_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|318aa|down_9|NC_008699.1_4419388_4420342_+	pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	30	4474564-4474649	30	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCGGCCGGCCGATGAAACTCGTGC	24	1	1	4474588-4474625	NC_008699.1_4283154-4283117	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|138aa|up_9|NC_008699.1_4466499_4466913_-,NA|273aa|down_1|NC_008699.1_4475261_4476080_-,NA|129aa|down_5|NC_008699.1_4478507_4478894_-	NA|138aa|up_9|NC_008699.1_4466499_4466913_-	NA	NA|281aa|up_8|NC_008699.1_4467028_4467871_-	pfam05853, BKACE, beta-keto acid cleavage enzyme	NA|142aa|up_7|NC_008699.1_4468514_4468940_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|635aa|up_6|NC_008699.1_4469174_4471079_+	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional	NA|99aa|up_5|NC_008699.1_4471244_4471541_-	pfam07210, DUF1416, Protein of unknown function (DUF1416)	NA|283aa|up_4|NC_008699.1_4471540_4472389_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|162aa|up_3|NC_008699.1_4472444_4472930_-	pfam14340, DUF4395, Domain of unknown function (DUF4395)	NA|160aa|up_2|NC_008699.1_4473252_4473732_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|143aa|up_1|NC_008699.1_4473824_4474253_+	pfam04892, VanZ, VanZ like family	NA|97aa|up_0|NC_008699.1_4474229_4474520_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|144aa|down_0|NC_008699.1_4474774_4475206_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|273aa|down_1|NC_008699.1_4475261_4476080_-	NA	NA|186aa|down_2|NC_008699.1_4476072_4476630_-	TIGR02228, Signal_peptidase_I_W, signal peptidase I, archaeal type	NA|171aa|down_3|NC_008699.1_4476677_4477190_-	TIGR04089, conserved_hypothetical_protein, alternate signal-mediated exported protein, RER_14450 family	NA|91aa|down_4|NC_008699.1_4477394_4477667_-	cd17040, Ubl_MoaD_like, ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins	NA|129aa|down_5|NC_008699.1_4478507_4478894_-	NA	NA|843aa|down_6|NC_008699.1_4478908_4481437_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|287aa|down_7|NC_008699.1_4481436_4482297_-	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily	NA|213aa|down_8|NC_008699.1_4482474_4483113_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|231aa|down_9|NC_008699.1_4483137_4483830_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	31	4745716-4745800	31	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	CGGTTTCCCCGGTTCACCGGGGA	23	1	5	4745739-4745777|4745739-4745777|4745739-4745777|4745739-4745777|4745739-4745777	NC_008699.1_4669470-4669432|NC_008699.1_4776364-4776326|NC_008699.1_504071-504109|NC_008699.1_1198831-1198869|NC_008699.1_4736318-4736280	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA|215aa|down_5|NC_008699.1_4752681_4753326_+	NA|343aa|up_9|NC_008699.1_4735199_4736228_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|410aa|up_8|NC_008699.1_4736349_4737579_-	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria	NA|373aa|up_7|NC_008699.1_4737600_4738719_-	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|390aa|up_6|NC_008699.1_4738824_4739994_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|262aa|up_5|NC_008699.1_4740063_4740849_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|318aa|up_4|NC_008699.1_4740848_4741802_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|296aa|up_3|NC_008699.1_4741801_4742689_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|469aa|up_2|NC_008699.1_4742715_4744122_-	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|65aa|up_1|NC_008699.1_4744118_4744313_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|375aa|up_0|NC_008699.1_4744507_4745632_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|319aa|down_0|NC_008699.1_4745815_4746772_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|300aa|down_1|NC_008699.1_4746808_4747708_+	cd01823, SEST_like, SEST_like	NA|509aa|down_2|NC_008699.1_4747690_4749217_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|488aa|down_3|NC_008699.1_4749316_4750780_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|558aa|down_4|NC_008699.1_4750870_4752544_-	cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like	NA|215aa|down_5|NC_008699.1_4752681_4753326_+	NA	NA|191aa|down_6|NC_008699.1_4753368_4753941_+	pfam02342, TerD, TerD domain	NA|491aa|down_7|NC_008699.1_4754065_4755538_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|303aa|down_8|NC_008699.1_4755655_4756564_+	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|273aa|down_9|NC_008699.1_4756560_4757379_+	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	32	4772284-4772369	32	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTGAACCGGGGAAACCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA,NA|188aa|down_9|NC_008699.1_4780485_4781049_+	NA|498aa|up_9|NC_008699.1_4760738_4762232_+	COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid metabolism]	NA|273aa|up_8|NC_008699.1_4762359_4763178_+	cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs	NA|296aa|up_7|NC_008699.1_4763199_4764087_+	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|324aa|up_6|NC_008699.1_4764108_4765080_-	pfam10974, DUF2804, Protein of unknown function (DUF2804)	NA|423aa|up_5|NC_008699.1_4765113_4766382_+	cd03895, M20_ArgE_DapE-like, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	NA|475aa|up_4|NC_008699.1_4766437_4767862_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|327aa|up_3|NC_008699.1_4767873_4768854_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|399aa|up_2|NC_008699.1_4768855_4770052_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|305aa|up_1|NC_008699.1_4770233_4771148_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|342aa|up_0|NC_008699.1_4771245_4772271_+	cd08999, GH43_ABN-like, Glycosyl hydrolase family 43 protein such as endo-alpha-L-arabinanase	NA|325aa|down_0|NC_008699.1_4772383_4773358_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|339aa|down_1|NC_008699.1_4773408_4774425_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|357aa|down_2|NC_008699.1_4774594_4775665_-	PRK03321, PRK03321, putative aminotransferase; Provisional	NA|194aa|down_3|NC_008699.1_4775674_4776256_-	pfam04892, VanZ, VanZ like family	NA|127aa|down_4|NC_008699.1_4776446_4776827_+	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|168aa|down_5|NC_008699.1_4776917_4777421_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|293aa|down_6|NC_008699.1_4777417_4778296_+	pfam03881, Fructosamin_kin, Fructosamine kinase	NA|235aa|down_7|NC_008699.1_4778372_4779077_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|473aa|down_8|NC_008699.1_4779070_4780489_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|188aa|down_9|NC_008699.1_4780485_4781049_+	NA
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	33	4848570-4848655	33	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TTCCCCGGTGAACCGGGGAAACCG	24	1	6	4848594-4848631|4848594-4848631|4848594-4848631|4848594-4848631|4848594-4848631|4848594-4848631	NC_008699.1_1129652-1129689|NC_008699.1_1559068-1559105|NC_008699.1_4669432-4669469|NC_008699.1_314222-314259|NC_008699.1_469373-469336|NC_008699.1_4776326-4776363	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|303aa|up_7|NC_008699.1_4839810_4840719_+,NA	NA|244aa|up_9|NC_008699.1_4837728_4838460_-	PRK07567, PRK07567, glutamine amidotransferase; Provisional	NA|382aa|up_8|NC_008699.1_4838468_4839614_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|303aa|up_7|NC_008699.1_4839810_4840719_+	NA	NA|246aa|up_6|NC_008699.1_4840817_4841555_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|284aa|up_5|NC_008699.1_4841551_4842403_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|298aa|up_4|NC_008699.1_4842399_4843293_-	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|182aa|up_3|NC_008699.1_4843417_4843963_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|669aa|up_2|NC_008699.1_4843959_4845966_+	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|383aa|up_1|NC_008699.1_4845989_4847138_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|441aa|up_0|NC_008699.1_4847230_4848553_+	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|430aa|down_0|NC_008699.1_4848663_4849953_-	pfam13506, Glyco_transf_21, Glycosyl transferase family 21	NA|310aa|down_1|NC_008699.1_4849970_4850900_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|363aa|down_2|NC_008699.1_4850904_4851993_-	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown]	NA|548aa|down_3|NC_008699.1_4852003_4853647_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|547aa|down_4|NC_008699.1_4853654_4855295_-	COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|331aa|down_5|NC_008699.1_4855294_4856287_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|218aa|down_6|NC_008699.1_4856311_4856965_+	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|466aa|down_7|NC_008699.1_4856992_4858390_-	TIGR03356, BGL, beta-galactosidase	NA|221aa|down_8|NC_008699.1_4858405_4859068_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|308aa|down_9|NC_008699.1_4859176_4860100_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
GCF_000015265.1_ASM1526v1	NC_008699	Nocardioides sp. JS614, complete sequence	34	4872953-4873037	34	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG	Orphan	TCCCCGGTTAACCGGGGAAACCG	23	1	5	4872976-4873014|4872976-4873014|4872976-4873014|4872976-4873014|4872976-4873014	NC_008699.1_4669432-4669470|NC_008699.1_4776326-4776364|NC_008699.1_504109-504071|NC_008699.1_1198869-1198831|NC_008699.1_4736280-4736318	NA	1	1	Orphan	cas3,csa3,DEDDh,cas4,WYL,c2c9_V-U4,DinG,PD-DExK	NA|331aa|up_2|NC_008699.1_4867820_4868813_+,NA|96aa|down_3|NC_008699.1_4878810_4879098_-,NA|46aa|down_4|NC_008699.1_4879349_4879487_+	NA|519aa|up_9|NC_008699.1_4860096_4861653_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|201aa|up_8|NC_008699.1_4861691_4862294_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|524aa|up_7|NC_008699.1_4862290_4863862_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|358aa|up_6|NC_008699.1_4863948_4865022_+	PRK08241, PRK08241, RNA polymerase subunit sigma-70	NA|188aa|up_5|NC_008699.1_4865023_4865587_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|337aa|up_4|NC_008699.1_4865656_4866667_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|303aa|up_3|NC_008699.1_4866787_4867696_-	pfam10094, DUF2332, Uncharacterized protein conserved in bacteria (DUF2332)	NA|331aa|up_2|NC_008699.1_4867820_4868813_+	NA	NA|486aa|up_1|NC_008699.1_4868867_4870325_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|702aa|up_0|NC_008699.1_4870832_4872938_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|632aa|down_0|NC_008699.1_4873045_4874941_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|590aa|down_1|NC_008699.1_4875021_4876791_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|611aa|down_2|NC_008699.1_4876867_4878700_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|96aa|down_3|NC_008699.1_4878810_4879098_-	NA	NA|46aa|down_4|NC_008699.1_4879349_4879487_+	NA	NA|197aa|down_5|NC_008699.1_4879667_4880258_+	pfam04264, YceI, YceI-like domain	NA|309aa|down_6|NC_008699.1_4880363_4881290_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|423aa|down_7|NC_008699.1_4881302_4882571_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|548aa|down_8|NC_008699.1_4882599_4884243_-	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	NA|104aa|down_9|NC_008699.1_4884239_4884551_-	pfam11755, DUF3311, Protein of unknown function (DUF3311)
