assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	1	40612-40728	1	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	GGCAATCCGCGGATGAGGCGTCCGGGCGGCGGTGCCGGCTGGG	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|92aa|up_1|NC_008578.1_38618_38894_+,NA|270aa|down_1|NC_008578.1_42852_43662_-,NA|147aa|down_8|NC_008578.1_51103_51544_+	NA|795aa|up_9|NC_008578.1_26836_29221_-	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|191aa|up_8|NC_008578.1_29817_30390_-	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|311aa|up_7|NC_008578.1_30611_31544_-	pfam09754, PAC2, PAC2 family	NA|556aa|up_6|NC_008578.1_31757_33425_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|273aa|up_5|NC_008578.1_33417_34236_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|547aa|up_4|NC_008578.1_34266_35907_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|328aa|up_3|NC_008578.1_35931_36915_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|411aa|up_2|NC_008578.1_36915_38148_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|92aa|up_1|NC_008578.1_38618_38894_+	NA	NA|387aa|up_0|NC_008578.1_39358_40519_-	PRK03321, PRK03321, putative aminotransferase; Provisional	NA|326aa|down_0|NC_008578.1_41318_42296_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|270aa|down_1|NC_008578.1_42852_43662_-	NA	NA|144aa|down_2|NC_008578.1_44328_44760_+	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins	NA|212aa|down_3|NC_008578.1_44860_45496_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|588aa|down_4|NC_008578.1_45634_47398_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|163aa|down_5|NC_008578.1_47539_48028_+	pfam02566, OsmC, OsmC-like protein	NA|302aa|down_6|NC_008578.1_48158_49064_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|508aa|down_7|NC_008578.1_49465_50989_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_8|NC_008578.1_51103_51544_+	NA	NA|308aa|down_9|NC_008578.1_51536_52460_-	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	2	199670-199755	2	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	GCCGCCAGCGCACCCGTCGAGCG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA,NA	NA|275aa|up_9|NC_008578.1_184776_185601_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|369aa|up_8|NC_008578.1_185955_187062_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|291aa|up_7|NC_008578.1_187182_188055_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|657aa|up_6|NC_008578.1_188339_190310_+	TIGR01840, poly3-hydroxybutyrate_depolymerase_A_precursor, esterase, PHB depolymerase family	NA|672aa|up_5|NC_008578.1_190921_192937_+	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	NA|311aa|up_4|NC_008578.1_193132_194065_+	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|308aa|up_3|NC_008578.1_194120_195044_-	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|318aa|up_2|NC_008578.1_195237_196191_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|314aa|up_1|NC_008578.1_196901_197843_+	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]	NA|224aa|up_0|NC_008578.1_198770_199442_-	pfam13539, Peptidase_M15_4, D-alanyl-D-alanine carboxypeptidase	NA|284aa|down_0|NC_008578.1_199955_200807_+	pfam03239, FTR1, Iron permease FTR1 family	NA|386aa|down_1|NC_008578.1_200868_202026_+	cd14656, Imelysin-like_EfeO, EfeO is a component of the EfeUOB operon	NA|431aa|down_2|NC_008578.1_202043_203336_+	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|256aa|down_3|NC_008578.1_203506_204274_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|330aa|down_4|NC_008578.1_204379_205369_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|242aa|down_5|NC_008578.1_205441_206167_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|399aa|down_6|NC_008578.1_206251_207448_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|197aa|down_7|NC_008578.1_207471_208062_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|496aa|down_8|NC_008578.1_208419_209907_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|431aa|down_9|NC_008578.1_210092_211385_+	pfam00877, NLPC_P60, NlpC/P60 family
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	3	561069-561157	3	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	ATTGGTCCCGGTGAGTGCGGATAGCGG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|199aa|up_8|NC_008578.1_550177_550774_-,NA|207aa|down_0|NC_008578.1_561421_562042_+,NA|56aa|down_2|NC_008578.1_563515_563683_+	NA|388aa|up_9|NC_008578.1_548936_550100_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|199aa|up_8|NC_008578.1_550177_550774_-	NA	NA|226aa|up_7|NC_008578.1_551039_551717_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|189aa|up_6|NC_008578.1_552026_552593_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|912aa|up_5|NC_008578.1_552659_555395_-	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain	NA|798aa|up_4|NC_008578.1_555554_557948_+	PRK05261, PRK05261, phosphoketolase	NA|347aa|up_3|NC_008578.1_557935_558976_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|384aa|up_2|NC_008578.1_559122_560274_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|80aa|up_1|NC_008578.1_560286_560526_-	pfam01206, TusA, Sulfurtransferase TusA	NA|138aa|up_0|NC_008578.1_560566_560980_-	COG2210, COG2210, Peroxiredoxin family protein [General function prediction only]	NA|207aa|down_0|NC_008578.1_561421_562042_+	NA	NA|262aa|down_1|NC_008578.1_562207_562993_-	COG1584, COG1584, Predicted membrane protein [Function unknown]	NA|56aa|down_2|NC_008578.1_563515_563683_+	NA	NA|379aa|down_3|NC_008578.1_563975_565112_+	cd01948, EAL, EAL domain	NA|187aa|down_4|NC_008578.1_565142_565703_-	pfam04264, YceI, YceI-like domain	NA|227aa|down_5|NC_008578.1_565813_566494_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|127aa|down_6|NC_008578.1_566675_567056_-	cd09836, CBS_pair_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains	NA|266aa|down_7|NC_008578.1_567163_567961_-	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases	NA|337aa|down_8|NC_008578.1_568033_569044_-	COG1162, COG1162, Predicted GTPases [General function prediction only]	NA|424aa|down_9|NC_008578.1_569046_570318_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	4	641364-641457	4	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	CGGGCGCTCACTGCGCCCGCCGCAGCTCGGGAAT	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA,NA|196aa|down_8|NC_008578.1_651273_651861_-,NA|193aa|down_9|NC_008578.1_652199_652778_-	NA|315aa|up_9|NC_008578.1_628205_629150_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|419aa|up_8|NC_008578.1_629346_630603_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|540aa|up_7|NC_008578.1_630926_632546_+	pfam01566, Nramp, Natural resistance-associated macrophage protein	NA|559aa|up_6|NC_008578.1_632542_634219_-	TIGR02868, ABC_transporter_ATP-binding_protein, thiol reductant ABC exporter, CydC subunit	NA|585aa|up_5|NC_008578.1_634215_635970_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|349aa|up_4|NC_008578.1_636030_637077_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|up_3|NC_008578.1_637094_638519_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|120aa|up_2|NC_008578.1_638669_639029_-	PRK01371, PRK01371, Sec-independent protein translocase protein TatB	NA|115aa|up_1|NC_008578.1_639181_639526_-	pfam11774, Lsr2, Lsr2	NA|473aa|up_0|NC_008578.1_639807_641226_-	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|286aa|down_0|NC_008578.1_641480_642338_+	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|277aa|down_1|NC_008578.1_642433_643264_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|152aa|down_2|NC_008578.1_643414_643870_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|550aa|down_3|NC_008578.1_643883_645533_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|266aa|down_4|NC_008578.1_645789_646587_-	pfam01887, SAM_adeno_trans, S-adenosyl-l-methionine hydroxide adenosyltransferase	NA|157aa|down_5|NC_008578.1_646837_647308_-	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|769aa|down_6|NC_008578.1_647607_649914_-	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|259aa|down_7|NC_008578.1_650067_650844_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|196aa|down_8|NC_008578.1_651273_651861_-	NA	NA|193aa|down_9|NC_008578.1_652199_652778_-	NA
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	5	1280366-1280453	5	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	CTCCGGCTGCCGCCCACCTGCGTG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|113aa|up_8|NC_008578.1_1273139_1273478_+,NA|71aa|down_6|NC_008578.1_1286219_1286432_-	NA|628aa|up_9|NC_008578.1_1271104_1272988_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|113aa|up_8|NC_008578.1_1273139_1273478_+	NA	NA|320aa|up_7|NC_008578.1_1273484_1274444_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|148aa|up_6|NC_008578.1_1274454_1274898_-	pfam11298, DUF3099, Protein of unknown function (DUF3099)	NA|71aa|up_5|NC_008578.1_1274919_1275132_+	pfam07311, Dodecin, Dodecin	NA|473aa|up_4|NC_008578.1_1275162_1276581_-	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|506aa|up_3|NC_008578.1_1276582_1278100_-	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|129aa|up_2|NC_008578.1_1278236_1278623_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|235aa|up_1|NC_008578.1_1278891_1279596_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|256aa|up_0|NC_008578.1_1279595_1280363_+	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI	NA|267aa|down_0|NC_008578.1_1280593_1281394_+	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|287aa|down_1|NC_008578.1_1281557_1282418_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|144aa|down_2|NC_008578.1_1282442_1282874_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|319aa|down_3|NC_008578.1_1282877_1283834_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|361aa|down_4|NC_008578.1_1283875_1284958_-	cd13399, Slt35-like, Slt35-like lytic transglycosylase	NA|300aa|down_5|NC_008578.1_1285086_1285986_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|71aa|down_6|NC_008578.1_1286219_1286432_-	NA	NA|275aa|down_7|NC_008578.1_1286714_1287539_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|441aa|down_8|NC_008578.1_1288005_1289328_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|385aa|down_9|NC_008578.1_1289478_1290633_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	6	1286553-1286650	6	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	ATGGACGCCGATCCGTCGCTGTCTGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|71aa|up_0|NC_008578.1_1286219_1286432_-,NA|99aa|down_5|NC_008578.1_1296527_1296824_+,NA|72aa|down_8|NC_008578.1_1299244_1299460_+	NA|129aa|up_9|NC_008578.1_1278236_1278623_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|235aa|up_8|NC_008578.1_1278891_1279596_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|256aa|up_7|NC_008578.1_1279595_1280363_+	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI	NA|267aa|up_6|NC_008578.1_1280593_1281394_+	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|287aa|up_5|NC_008578.1_1281557_1282418_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|144aa|up_4|NC_008578.1_1282442_1282874_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|319aa|up_3|NC_008578.1_1282877_1283834_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|361aa|up_2|NC_008578.1_1283875_1284958_-	cd13399, Slt35-like, Slt35-like lytic transglycosylase	NA|300aa|up_1|NC_008578.1_1285086_1285986_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|71aa|up_0|NC_008578.1_1286219_1286432_-	NA	NA|275aa|down_0|NC_008578.1_1286714_1287539_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|441aa|down_1|NC_008578.1_1288005_1289328_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|385aa|down_2|NC_008578.1_1289478_1290633_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|559aa|down_3|NC_008578.1_1292420_1294097_+	cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins	NA|430aa|down_4|NC_008578.1_1294990_1296280_+	PRK07906, PRK07906, hypothetical protein; Provisional	NA|99aa|down_5|NC_008578.1_1296527_1296824_+	NA	NA|377aa|down_6|NC_008578.1_1296922_1298053_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|339aa|down_7|NC_008578.1_1298082_1299099_-	COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]	NA|72aa|down_8|NC_008578.1_1299244_1299460_+	NA	NA|225aa|down_9|NC_008578.1_1299463_1300138_+	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	7	1290678-1290813	7	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	TCGGCGAGGCTGCGGCGGGAAGAACATGGCGGCACCCGCCCGGCCGC	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|71aa|up_3|NC_008578.1_1286219_1286432_-,NA|99aa|down_2|NC_008578.1_1296527_1296824_+,NA|72aa|down_5|NC_008578.1_1299244_1299460_+	NA|267aa|up_9|NC_008578.1_1280593_1281394_+	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|287aa|up_8|NC_008578.1_1281557_1282418_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|144aa|up_7|NC_008578.1_1282442_1282874_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|319aa|up_6|NC_008578.1_1282877_1283834_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|361aa|up_5|NC_008578.1_1283875_1284958_-	cd13399, Slt35-like, Slt35-like lytic transglycosylase	NA|300aa|up_4|NC_008578.1_1285086_1285986_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|71aa|up_3|NC_008578.1_1286219_1286432_-	NA	NA|275aa|up_2|NC_008578.1_1286714_1287539_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|441aa|up_1|NC_008578.1_1288005_1289328_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|385aa|up_0|NC_008578.1_1289478_1290633_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|559aa|down_0|NC_008578.1_1292420_1294097_+	cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins	NA|430aa|down_1|NC_008578.1_1294990_1296280_+	PRK07906, PRK07906, hypothetical protein; Provisional	NA|99aa|down_2|NC_008578.1_1296527_1296824_+	NA	NA|377aa|down_3|NC_008578.1_1296922_1298053_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|339aa|down_4|NC_008578.1_1298082_1299099_-	COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]	NA|72aa|down_5|NC_008578.1_1299244_1299460_+	NA	NA|225aa|down_6|NC_008578.1_1299463_1300138_+	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family	NA|191aa|down_7|NC_008578.1_1300147_1300720_+	TIGR03847, TIGR03847, conserved hypothetical protein	NA|240aa|down_8|NC_008578.1_1300719_1301439_+	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|404aa|down_9|NC_008578.1_1301463_1302675_+	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	8	1547941-1548204	8	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	GGCGCCCCACATCCGCGCATCCCA	24	0	0	NA	NA	NA	5	5	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|496aa|up_0|NC_008578.1_1546432_1547920_-,NA|292aa|down_2|NC_008578.1_1552469_1553345_+,NA|145aa|down_5|NC_008578.1_1558570_1559005_-	NA|134aa|up_9|NC_008578.1_1537787_1538189_+	pfam01641, SelR, SelR domain	NA|216aa|up_8|NC_008578.1_1538194_1538842_-	pfam06778, Chlor_dismutase, Chlorite dismutase	NA|464aa|up_7|NC_008578.1_1538897_1540289_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|369aa|up_6|NC_008578.1_1540285_1541392_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|284aa|up_5|NC_008578.1_1541446_1542298_-	pfam00892, EamA, EamA-like transporter family	NA|406aa|up_4|NC_008578.1_1542407_1543625_-	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|294aa|up_3|NC_008578.1_1543621_1544503_-	cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter	NA|206aa|up_2|NC_008578.1_1544672_1545290_+	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|368aa|up_1|NC_008578.1_1545332_1546436_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|496aa|up_0|NC_008578.1_1546432_1547920_-	NA	NA|246aa|down_0|NC_008578.1_1550058_1550796_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|404aa|down_1|NC_008578.1_1551000_1552212_+	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|292aa|down_2|NC_008578.1_1552469_1553345_+	NA	NA|632aa|down_3|NC_008578.1_1553508_1555404_-	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|927aa|down_4|NC_008578.1_1555627_1558408_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|145aa|down_5|NC_008578.1_1558570_1559005_-	NA	NA|398aa|down_6|NC_008578.1_1559001_1560195_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|721aa|down_7|NC_008578.1_1560191_1562354_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|225aa|down_8|NC_008578.1_1562488_1563163_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|234aa|down_9|NC_008578.1_1563253_1563955_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	9	1654488-1654581	9	CRISPRCasFinder	no	DinG	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Type IV-A	CCGCACCGGCGGTCGCACCACCCGAACGGA	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA,NA	NA|276aa|up_9|NC_008578.1_1641566_1642394_-	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|549aa|up_8|NC_008578.1_1642551_1644198_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|145aa|up_7|NC_008578.1_1644230_1644665_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|203aa|up_6|NC_008578.1_1644844_1645453_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|283aa|up_5|NC_008578.1_1645452_1646301_-	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|998aa|up_4|NC_008578.1_1646310_1649304_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|408aa|up_3|NC_008578.1_1649584_1650808_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|414aa|up_2|NC_008578.1_1650967_1652209_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|341aa|up_1|NC_008578.1_1652293_1653316_-	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like	NA|152aa|up_0|NC_008578.1_1653857_1654313_+	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|312aa|down_0|NC_008578.1_1654589_1655525_+	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|1099aa|down_1|NC_008578.1_1655558_1658855_-	PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase; Validated	NA|171aa|down_2|NC_008578.1_1658917_1659430_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|105aa|down_3|NC_008578.1_1659727_1660042_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|276aa|down_4|NC_008578.1_1660254_1661082_+	PRK00215, PRK00215, transcriptional repressor LexA	DinG|560aa|down_5|NC_008578.1_1661159_1662839_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|936aa|down_6|NC_008578.1_1663288_1666096_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|504aa|down_7|NC_008578.1_1666311_1667823_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|332aa|down_8|NC_008578.1_1667885_1668881_-	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|313aa|down_9|NC_008578.1_1668775_1669714_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	10	1681826-1681929	10	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	GAAATACGGCCATATGCGGGCCGCTCGGC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA,NA|449aa|down_1|NC_008578.1_1682708_1684055_+	NA|313aa|up_9|NC_008578.1_1668775_1669714_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|268aa|up_8|NC_008578.1_1669748_1670552_-	cd07951, ED_3B_N_AMMECR1, The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain	NA|401aa|up_7|NC_008578.1_1670741_1671944_+	pfam03993, DUF349, Domain of Unknown Function (DUF349)	NA|573aa|up_6|NC_008578.1_1672145_1673864_+	pfam04122, CW_binding_2, Putative cell wall binding repeat 2	NA|484aa|up_5|NC_008578.1_1673945_1675397_-	PRK14326, PRK14326, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|647aa|up_4|NC_008578.1_1675568_1677509_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|492aa|up_3|NC_008578.1_1677505_1678981_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|128aa|up_2|NC_008578.1_1679293_1679677_-	PRK00117, recX, recombination regulator RecX; Reviewed	NA|346aa|up_1|NC_008578.1_1679841_1680879_-	PRK09354, recA, recombinase A; Provisional	NA|65aa|up_0|NC_008578.1_1681249_1681444_-	pfam11248, DUF3046, Protein of unknown function (DUF3046)	NA|210aa|down_0|NC_008578.1_1682082_1682712_+	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family	NA|449aa|down_1|NC_008578.1_1682708_1684055_+	NA	NA|147aa|down_2|NC_008578.1_1688468_1688909_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|428aa|down_3|NC_008578.1_1689034_1690318_-	PRK00549, PRK00549, competence damage-inducible protein A; Provisional	NA|221aa|down_4|NC_008578.1_1690336_1690999_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|476aa|down_5|NC_008578.1_1690998_1692426_-	TIGR00089, Ribosomal_protein_S12_methylthiotransferase_RimO, radical SAM methylthiotransferase, MiaB/RimO family	NA|274aa|down_6|NC_008578.1_1692451_1693273_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|799aa|down_7|NC_008578.1_1693462_1695859_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|562aa|down_8|NC_008578.1_1696002_1697688_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|309aa|down_9|NC_008578.1_1697684_1698611_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	11	1869424-1869520	11	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	GCGTCATCCGCCGCCATGGCCACAC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|65aa|up_4|NC_008578.1_1861043_1861238_+,NA|215aa|down_0|NC_008578.1_1869577_1870222_+,NA|176aa|down_5|NC_008578.1_1877156_1877684_+,NA|80aa|down_6|NC_008578.1_1877758_1877998_+	NA|94aa|up_9|NC_008578.1_1856159_1856441_+	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|69aa|up_8|NC_008578.1_1856507_1856714_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|796aa|up_7|NC_008578.1_1856773_1859161_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|85aa|up_6|NC_008578.1_1859526_1859781_+	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|346aa|up_5|NC_008578.1_1859957_1860995_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|65aa|up_4|NC_008578.1_1861043_1861238_+	NA	NA|564aa|up_3|NC_008578.1_1862061_1863753_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|312aa|up_2|NC_008578.1_1863734_1864670_+	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase	NA|374aa|up_1|NC_008578.1_1864659_1865781_+	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase	NA|898aa|up_0|NC_008578.1_1866240_1868934_+	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|215aa|down_0|NC_008578.1_1869577_1870222_+	NA	NA|451aa|down_1|NC_008578.1_1870218_1871571_+	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]	NA|649aa|down_2|NC_008578.1_1871752_1873699_+	cd04056, Peptidases_S53, Peptidase domain in the S53 family	NA|221aa|down_3|NC_008578.1_1873705_1874368_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|213aa|down_4|NC_008578.1_1874429_1875068_+	pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I	NA|176aa|down_5|NC_008578.1_1877156_1877684_+	NA	NA|80aa|down_6|NC_008578.1_1877758_1877998_+	NA	NA|528aa|down_7|NC_008578.1_1878388_1879972_+	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2	NA|203aa|down_8|NC_008578.1_1880043_1880652_-	pfam02632, BioY, BioY family	NA|180aa|down_9|NC_008578.1_1880800_1881340_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	12	1887773-1887904	12	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	GCGCATTTCCAGCCACCGTGAATTGCCAG	29	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|176aa|up_9|NC_008578.1_1877156_1877684_+,NA|80aa|up_8|NC_008578.1_1877758_1877998_+,NA|170aa|down_0|NC_008578.1_1887933_1888443_-,NA|129aa|down_5|NC_008578.1_1895195_1895582_+	NA|176aa|up_9|NC_008578.1_1877156_1877684_+	NA	NA|80aa|up_8|NC_008578.1_1877758_1877998_+	NA	NA|528aa|up_7|NC_008578.1_1878388_1879972_+	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2	NA|203aa|up_6|NC_008578.1_1880043_1880652_-	pfam02632, BioY, BioY family	NA|180aa|up_5|NC_008578.1_1880800_1881340_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|531aa|up_4|NC_008578.1_1881503_1883096_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|326aa|up_3|NC_008578.1_1883182_1884160_-	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|363aa|up_2|NC_008578.1_1884468_1885557_+	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate	NA|330aa|up_1|NC_008578.1_1885553_1886543_+	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|380aa|up_0|NC_008578.1_1886602_1887742_+	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	NA|170aa|down_0|NC_008578.1_1887933_1888443_-	NA	NA|1029aa|down_1|NC_008578.1_1888868_1891955_+	cd04056, Peptidases_S53, Peptidase domain in the S53 family	NA|109aa|down_2|NC_008578.1_1892060_1892387_-	smart00883, Cpn10, Chaperonin 10 Kd subunit	NA|351aa|down_3|NC_008578.1_1892489_1893542_-	cd08230, glucose_DH, Glucose dehydrogenase	NA|159aa|down_4|NC_008578.1_1893945_1894422_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_5|NC_008578.1_1895195_1895582_+	NA	NA|212aa|down_6|NC_008578.1_1895715_1896351_-	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|240aa|down_7|NC_008578.1_1896350_1897070_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|246aa|down_8|NC_008578.1_1897211_1897949_-	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|264aa|down_9|NC_008578.1_1897964_1898756_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	13	2003883-2003957	13	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	GGCCGTTCCGGCTGGCGGGCGTGGCGGC	28	1	1	2003911-2003929	NC_008578.1_1787902-1787920	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|69aa|up_8|NC_008578.1_1991044_1991251_-,NA|53aa|up_0|NC_008578.1_2003659_2003818_+,NA	NA|260aa|up_9|NC_008578.1_1989713_1990493_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|69aa|up_8|NC_008578.1_1991044_1991251_-	NA	NA|1010aa|up_7|NC_008578.1_1991733_1994763_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|260aa|up_6|NC_008578.1_1994884_1995664_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|237aa|up_5|NC_008578.1_1997248_1997959_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|578aa|up_4|NC_008578.1_1998220_1999954_-	PRK13613, PRK13613, lipoprotein LpqB; Provisional	NA|576aa|up_3|NC_008578.1_2000028_2001756_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|up_2|NC_008578.1_2001762_2002440_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|210aa|up_1|NC_008578.1_2002545_2003175_-	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|53aa|up_0|NC_008578.1_2003659_2003818_+	NA	NA|393aa|down_0|NC_008578.1_2004099_2005278_+	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	NA|449aa|down_1|NC_008578.1_2005318_2006665_+	cd13970, ABC1_ADCK3, Activator of bc1 complex (ABC1) kinases, also called aarF domain containing kinase 3	NA|95aa|down_2|NC_008578.1_2006767_2007052_-	pfam02467, Whib, Transcription factor WhiB	NA|511aa|down_3|NC_008578.1_2007389_2008922_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|90aa|down_4|NC_008578.1_2009132_2009402_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|470aa|down_5|NC_008578.1_2009514_2010924_-	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|165aa|down_6|NC_008578.1_2011208_2011703_+	pfam00582, Usp, Universal stress protein family	NA|1165aa|down_7|NC_008578.1_2011689_2015184_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|1093aa|down_8|NC_008578.1_2015283_2018562_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|397aa|down_9|NC_008578.1_2018752_2019943_-	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	14	2007215-2007299	14	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	GATCGAACCGGTTCGTGGTCGCGCGA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|53aa|up_3|NC_008578.1_2003659_2003818_+,NA	NA|260aa|up_9|NC_008578.1_1994884_1995664_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|237aa|up_8|NC_008578.1_1997248_1997959_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|578aa|up_7|NC_008578.1_1998220_1999954_-	PRK13613, PRK13613, lipoprotein LpqB; Provisional	NA|576aa|up_6|NC_008578.1_2000028_2001756_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|up_5|NC_008578.1_2001762_2002440_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|210aa|up_4|NC_008578.1_2002545_2003175_-	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|53aa|up_3|NC_008578.1_2003659_2003818_+	NA	NA|393aa|up_2|NC_008578.1_2004099_2005278_+	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	NA|449aa|up_1|NC_008578.1_2005318_2006665_+	cd13970, ABC1_ADCK3, Activator of bc1 complex (ABC1) kinases, also called aarF domain containing kinase 3	NA|95aa|up_0|NC_008578.1_2006767_2007052_-	pfam02467, Whib, Transcription factor WhiB	NA|511aa|down_0|NC_008578.1_2007389_2008922_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|90aa|down_1|NC_008578.1_2009132_2009402_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|470aa|down_2|NC_008578.1_2009514_2010924_-	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|165aa|down_3|NC_008578.1_2011208_2011703_+	pfam00582, Usp, Universal stress protein family	NA|1165aa|down_4|NC_008578.1_2011689_2015184_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|1093aa|down_5|NC_008578.1_2015283_2018562_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|397aa|down_6|NC_008578.1_2018752_2019943_-	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated	NA|325aa|down_7|NC_008578.1_2019957_2020932_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|225aa|down_8|NC_008578.1_2021120_2021795_-	smart00917, LeuA_dimer, LeuA allosteric (dimerisation) domain	NA|213aa|down_9|NC_008578.1_2021942_2022581_-	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	15	2018628-2018730	15	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	CCCTGCGGTTCGGTGACGGGCCT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|53aa|up_9|NC_008578.1_2003659_2003818_+,NA|72aa|down_5|NC_008578.1_2024761_2024977_+,NA|147aa|down_8|NC_008578.1_2026087_2026528_+	NA|53aa|up_9|NC_008578.1_2003659_2003818_+	NA	NA|393aa|up_8|NC_008578.1_2004099_2005278_+	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	NA|449aa|up_7|NC_008578.1_2005318_2006665_+	cd13970, ABC1_ADCK3, Activator of bc1 complex (ABC1) kinases, also called aarF domain containing kinase 3	NA|95aa|up_6|NC_008578.1_2006767_2007052_-	pfam02467, Whib, Transcription factor WhiB	NA|511aa|up_5|NC_008578.1_2007389_2008922_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|90aa|up_4|NC_008578.1_2009132_2009402_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|470aa|up_3|NC_008578.1_2009514_2010924_-	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|165aa|up_2|NC_008578.1_2011208_2011703_+	pfam00582, Usp, Universal stress protein family	NA|1165aa|up_1|NC_008578.1_2011689_2015184_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|1093aa|up_0|NC_008578.1_2015283_2018562_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|397aa|down_0|NC_008578.1_2018752_2019943_-	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated	NA|325aa|down_1|NC_008578.1_2019957_2020932_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|225aa|down_2|NC_008578.1_2021120_2021795_-	smart00917, LeuA_dimer, LeuA allosteric (dimerisation) domain	NA|213aa|down_3|NC_008578.1_2021942_2022581_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|521aa|down_4|NC_008578.1_2023053_2024616_+	pfam13631, Cytochrom_B_N_2, Cytochrome b(N-terminal)/b6/petB	NA|72aa|down_5|NC_008578.1_2024761_2024977_+	NA	NA|75aa|down_6|NC_008578.1_2025013_2025238_+	pfam11305, DUF3107, Protein of unknown function (DUF3107)	NA|225aa|down_7|NC_008578.1_2025298_2025973_-	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like	NA|147aa|down_8|NC_008578.1_2026087_2026528_+	NA	NA|121aa|down_9|NC_008578.1_2026705_2027068_-	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	16	2120249-2120331	16	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	CCGGCTCGCTGGGACGCCGGTCGGC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|276aa|up_6|NC_008578.1_2109067_2109895_-,NA	NA|154aa|up_9|NC_008578.1_2105963_2106425_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|261aa|up_8|NC_008578.1_2106421_2107204_-	PRK12386, PRK12386, fumarate reductase iron-sulfur subunit; Provisional	NA|599aa|up_7|NC_008578.1_2107203_2109000_-	PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|276aa|up_6|NC_008578.1_2109067_2109895_-	NA	NA|75aa|up_5|NC_008578.1_2110291_2110516_+	COG4194, COG4194, Predicted membrane protein [General function prediction only]	NA|293aa|up_4|NC_008578.1_2110570_2111449_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|176aa|up_3|NC_008578.1_2113650_2114178_+	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	NA|186aa|up_2|NC_008578.1_2114185_2114743_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|556aa|up_1|NC_008578.1_2114870_2116538_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|840aa|up_0|NC_008578.1_2116545_2119065_+	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|417aa|down_0|NC_008578.1_2120473_2121724_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|97aa|down_1|NC_008578.1_2121720_2122011_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|350aa|down_2|NC_008578.1_2122000_2123050_+	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|97aa|down_3|NC_008578.1_2123206_2123497_+	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|473aa|down_4|NC_008578.1_2123939_2125358_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|197aa|down_5|NC_008578.1_2125392_2125983_-	pfam01464, SLT, Transglycosylase SLT domain	NA|278aa|down_6|NC_008578.1_2126380_2127214_-	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|718aa|down_7|NC_008578.1_2127447_2129601_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|659aa|down_8|NC_008578.1_2129726_2131703_-	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|156aa|down_9|NC_008578.1_2131748_2132216_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	17	2208609-2210116	17,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	 or Type II-C?,Type II-A,Type II-B,Type II-C, Type II-B	GCTGGGGAGCCTGTCTCAATCCCCCGGCTAAAATGG,GCTGGGGAGCCTGTCTCAATCCCCCGGCTAAAATGG,GCTGGGGAGCCTGTCTCAATCCCCCGGCTAAAATGG	36,36,36	0	0	NA	NA	NA:NA:NA	23,23,22	23	orTypeII-C?,TypeII-A,TypeII-B,TypeII-C,TypeII-B	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA,NA	NA|497aa|up_9|NC_008578.1_2196922_2198413_-	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|192aa|up_8|NC_008578.1_2198848_2199424_-	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|413aa|up_7|NC_008578.1_2199420_2200659_-	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase	NA|288aa|up_6|NC_008578.1_2200677_2201541_-	cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	NA|281aa|up_5|NC_008578.1_2201586_2202429_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|197aa|up_4|NC_008578.1_2202462_2203053_-	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase	NA|204aa|up_3|NC_008578.1_2203068_2203680_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|326aa|up_2|NC_008578.1_2203928_2204906_-	PRK03092, PRK03092, ribose-phosphate diphosphokinase	NA|506aa|up_1|NC_008578.1_2204964_2206482_-	PRK14352, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|347aa|up_0|NC_008578.1_2207054_2208095_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	cas2|109aa|down_0|NC_008578.1_2210163_2210490_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|296aa|down_1|NC_008578.1_2210482_2211370_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1158aa|down_2|NC_008578.1_2211366_2214840_-	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain	NA|543aa|down_3|NC_008578.1_2215153_2216782_-	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|520aa|down_4|NC_008578.1_2216841_2218401_+	cd03788, GT20_TPS, trehalose-6-phosphate synthase	NA|563aa|down_5|NC_008578.1_2218370_2220059_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|308aa|down_6|NC_008578.1_2220055_2220979_+	pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA	NA|458aa|down_7|NC_008578.1_2221021_2222395_-	PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed	NA|308aa|down_8|NC_008578.1_2222585_2223509_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|259aa|down_9|NC_008578.1_2223967_2224744_-	COG1846, MarR, Transcriptional regulators [Transcription]
GCF_000015025.1_ASM1502v1	NC_008578	Acidothermus cellulolyticus 11B, complete sequence	18	2284553-2284644	18	CRISPRCasFinder	no		DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	Orphan	CCTGACCGGCTCACGCGGGGGACCAGGT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,DinG,cas3,cas2,cas1,cas9	NA|73aa|up_0|NC_008578.1_2282355_2282574_+,NA|262aa|down_2|NC_008578.1_2288381_2289167_+	NA|162aa|up_9|NC_008578.1_2273729_2274215_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|53aa|up_8|NC_008578.1_2274219_2274378_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|347aa|up_7|NC_008578.1_2274486_2275527_+	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|452aa|up_6|NC_008578.1_2275523_2276879_+	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|103aa|up_5|NC_008578.1_2276911_2277220_-	pfam02467, Whib, Transcription factor WhiB	NA|821aa|up_4|NC_008578.1_2277484_2279947_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|185aa|up_3|NC_008578.1_2279952_2280507_-	pfam09424, YqeY, Yqey-like protein	NA|300aa|up_2|NC_008578.1_2280645_2281545_+	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only]	NA|163aa|up_1|NC_008578.1_2281738_2282227_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|73aa|up_0|NC_008578.1_2282355_2282574_+	NA	NA|354aa|down_0|NC_008578.1_2285964_2287026_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|423aa|down_1|NC_008578.1_2287052_2288321_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|262aa|down_2|NC_008578.1_2288381_2289167_+	NA	NA|179aa|down_3|NC_008578.1_2289199_2289736_-	pfam16702, DUF5063, Domain of unknown function (DUF5063)	NA|200aa|down_4|NC_008578.1_2289728_2290328_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|638aa|down_5|NC_008578.1_2290439_2292353_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|121aa|down_6|NC_008578.1_2292771_2293134_+	pfam00313, CSD, 'Cold-shock' DNA-binding domain	NA|145aa|down_7|NC_008578.1_2293530_2293965_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|170aa|down_8|NC_008578.1_2294003_2294513_-	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein	NA|459aa|down_9|NC_008578.1_2294648_2296025_-	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit
