assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000014885.1_ASM1488v1	NC_011566	Shewanella piezotolerans WP3, complete sequence	1	283748-283866	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	Orphan	AGTAAGAGTGTTCCATTCATTTATTGGCATT	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	NA|101aa|up_7|NC_011566.1_273181_273484_-,NA|143aa|up_4|NC_011566.1_275193_275622_-,NA|94aa|down_0|NC_011566.1_283909_284191_-,NA|76aa|down_1|NC_011566.1_284251_284479_-,NA|370aa|down_2|NC_011566.1_284480_285590_-,NA|74aa|down_7|NC_011566.1_290729_290951_-	NA|392aa|up_9|NC_011566.1_270738_271914_+	pfam08933, DUF1864, Domain of unknown function (DUF1864)	NA|372aa|up_8|NC_011566.1_271915_273031_+	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|101aa|up_7|NC_011566.1_273181_273484_-	NA	NA|340aa|up_6|NC_011566.1_273725_274745_+	COG4447, COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]	NA|105aa|up_5|NC_011566.1_274829_275144_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|143aa|up_4|NC_011566.1_275193_275622_-	NA	NA|406aa|up_3|NC_011566.1_275803_277021_-	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|709aa|up_2|NC_011566.1_277187_279314_-	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|470aa|up_1|NC_011566.1_279558_280968_-	PRK09469, glnA, glutamate--ammonia ligase	NA|609aa|up_0|NC_011566.1_281711_283538_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|94aa|down_0|NC_011566.1_283909_284191_-	NA	NA|76aa|down_1|NC_011566.1_284251_284479_-	NA	NA|370aa|down_2|NC_011566.1_284480_285590_-	NA	NA|298aa|down_3|NC_011566.1_285612_286506_-	TIGR04179, hypothetical_protein_GM18DRAFT_2302, rhombotail lipoprotein	NA|399aa|down_4|NC_011566.1_286727_287924_-	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|405aa|down_5|NC_011566.1_288633_289848_-	COG0348, NapH, Polyferredoxin [Energy production and conversion]	NA|216aa|down_6|NC_011566.1_290029_290677_-	pfam11172, DUF2959, Protein of unknown function (DUF2959)	NA|74aa|down_7|NC_011566.1_290729_290951_-	NA	NA|322aa|down_8|NC_011566.1_291072_292038_+	PRK01637, PRK01637, virulence factor BrkB family protein	NA|316aa|down_9|NC_011566.1_292042_292990_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily
GCF_000014885.1_ASM1488v1	NC_011566	Shewanella piezotolerans WP3, complete sequence	2	1020817-1021023	1,2	PILER-CR,CRISPRCasFinder	no	cas5f,cas7f,cas6f	csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	Unclear	GTGAACTGCCGAATAGGCAGCTGAAAA,GTGAACTGCCGAATAGGCAGCTGAAAA	27,27	0	0	NA	NA	NA:NA	2,3	3	Unclear	csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	NA|175aa|up_8|NC_011566.1_1009801_1010326_-,NA|301aa|up_6|NC_011566.1_1011264_1012167_-,NA|207aa|down_3|NC_011566.1_1025811_1026432_+,NA|147aa|down_7|NC_011566.1_1032397_1032838_+,NA|79aa|down_9|NC_011566.1_1033739_1033976_+	NA|463aa|up_9|NC_011566.1_1008408_1009797_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|175aa|up_8|NC_011566.1_1009801_1010326_-	NA	NA|109aa|up_7|NC_011566.1_1010546_1010873_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|301aa|up_6|NC_011566.1_1011264_1012167_-	NA	NA|600aa|up_5|NC_011566.1_1012163_1013963_-	pfam13604, AAA_30, AAA domain	NA|398aa|up_4|NC_011566.1_1013955_1015149_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|412aa|up_3|NC_011566.1_1015628_1016864_+	pfam06527, TniQ, TniQ	cas5f|702aa|up_2|NC_011566.1_1016857_1018963_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|371aa|up_1|NC_011566.1_1018972_1020085_+	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3	cas6f|200aa|up_0|NC_011566.1_1020086_1020686_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|69aa|down_0|NC_011566.1_1021168_1021375_+	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|770aa|down_1|NC_011566.1_1021988_1024298_+	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|470aa|down_2|NC_011566.1_1024294_1025704_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|207aa|down_3|NC_011566.1_1025811_1026432_+	NA	NA|1339aa|down_4|NC_011566.1_1026444_1030461_+	NF033203, entero_EhxA, enterohemolysin EhxA	NA|173aa|down_5|NC_011566.1_1031311_1031830_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|185aa|down_6|NC_011566.1_1031840_1032395_+	pfam14220, DUF4329, Domain of unknown function (DUF4329)	NA|147aa|down_7|NC_011566.1_1032397_1032838_+	NA	NA|92aa|down_8|NC_011566.1_1033467_1033743_+	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|79aa|down_9|NC_011566.1_1033739_1033976_+	NA
GCF_000014885.1_ASM1488v1	NC_011566	Shewanella piezotolerans WP3, complete sequence	3	2879337-2879463	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	Orphan	GGCTGAGGGGCTCTGAAATGGTCAAATACTTAATGCAATTGGTATAA	47	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	NA,NA|109aa|down_8|NC_011566.1_2887296_2887623_+	NA|294aa|up_9|NC_011566.1_2868664_2869546_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|179aa|up_8|NC_011566.1_2869784_2870321_+	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional	NA|156aa|up_7|NC_011566.1_2870338_2870806_+	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed	NA|204aa|up_6|NC_011566.1_2870855_2871467_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|300aa|up_5|NC_011566.1_2871589_2872489_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|365aa|up_4|NC_011566.1_2872533_2873628_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|72aa|up_3|NC_011566.1_2873719_2873935_-	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD	NA|486aa|up_2|NC_011566.1_2874046_2875504_+	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|117aa|up_1|NC_011566.1_2875567_2875918_+	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|124aa|up_0|NC_011566.1_2875930_2876302_+	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|237aa|down_0|NC_011566.1_2879533_2880244_-	PRK08084, PRK08084, DnaA inactivator Hda	NA|369aa|down_1|NC_011566.1_2880315_2881422_-	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066)	NA|418aa|down_2|NC_011566.1_2881596_2882850_+	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|116aa|down_3|NC_011566.1_2882933_2883281_-	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin	NA|195aa|down_4|NC_011566.1_2883505_2884090_+	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|180aa|down_5|NC_011566.1_2884221_2884761_-	pfam12690, BsuPI, Intracellular proteinase inhibitor	NA|606aa|down_6|NC_011566.1_2884760_2886578_-	PRK10833, PRK10833, putative assembly protein; Provisional	NA|166aa|down_7|NC_011566.1_2886610_2887108_-	PRK12487, PRK12487, putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase	NA|109aa|down_8|NC_011566.1_2887296_2887623_+	NA	NA|216aa|down_9|NC_011566.1_2888308_2888956_-	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ
GCF_000014885.1_ASM1488v1	NC_011566	Shewanella piezotolerans WP3, complete sequence	4	3247744-3247866	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	Orphan	AAACTGAGGAAGAACAGTCTTTCTTGGTTGGTATATCTAGGCAT	44	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	NA,NA|130aa|down_7|NC_011566.1_3257468_3257858_-,NA|91aa|down_9|NC_011566.1_3260199_3260472_+	NA|533aa|up_9|NC_011566.1_3232957_3234556_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|341aa|up_8|NC_011566.1_3234748_3235771_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|209aa|up_7|NC_011566.1_3235821_3236448_-	TIGR03784, marine_sortase, sortase, marine proteobacterial type	NA|734aa|up_6|NC_011566.1_3236528_3238730_-	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein	NA|250aa|up_5|NC_011566.1_3238737_3239487_-	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein	NA|231aa|up_4|NC_011566.1_3239734_3240427_+	TIGR03787, marine_sort_RR, proteobacterial dedicated sortase system response regulator	NA|729aa|up_3|NC_011566.1_3240426_3242613_+	TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase	NA|396aa|up_2|NC_011566.1_3242705_3243893_+	PRK09028, PRK09028, cystathionine beta-lyase; Provisional	NA|215aa|up_1|NC_011566.1_3243981_3244626_-	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain	NA|681aa|up_0|NC_011566.1_3245140_3247183_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|141aa|down_0|NC_011566.1_3247960_3248383_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|430aa|down_1|NC_011566.1_3249151_3250441_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|66aa|down_2|NC_011566.1_3250579_3250777_+	pfam14056, DUF4250, Domain of unknown function (DUF4250)	NA|132aa|down_3|NC_011566.1_3250942_3251338_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|1047aa|down_4|NC_011566.1_3251427_3254568_-	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|430aa|down_5|NC_011566.1_3254580_3255870_-	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters)	NA|428aa|down_6|NC_011566.1_3255869_3257153_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|130aa|down_7|NC_011566.1_3257468_3257858_-	NA	NA|662aa|down_8|NC_011566.1_3258011_3259997_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|91aa|down_9|NC_011566.1_3260199_3260472_+	NA
GCF_000014885.1_ASM1488v1	NC_011566	Shewanella piezotolerans WP3, complete sequence	5	4115699-4115794	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	Orphan	TTTTACATCCTGAGAAAGATGGTAGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,cas5f,cas7f,cas6f,WYL,DinG,RT	NA|113aa|up_0|NC_011566.1_4113506_4113845_+,NA|105aa|down_3|NC_011566.1_4120394_4120709_+	NA|692aa|up_9|NC_011566.1_4098273_4100349_-	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	NA|281aa|up_8|NC_011566.1_4101863_4102706_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|362aa|up_7|NC_011566.1_4102746_4103832_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|417aa|up_6|NC_011566.1_4103845_4105096_-	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|222aa|up_5|NC_011566.1_4105366_4106032_+	cd16326, LolB, LolB, an outer membrane lipoprotein receptor	NA|285aa|up_4|NC_011566.1_4106028_4106883_+	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|316aa|up_3|NC_011566.1_4106947_4107895_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|453aa|up_2|NC_011566.1_4108005_4109364_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|790aa|up_1|NC_011566.1_4109552_4111922_-	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family	NA|113aa|up_0|NC_011566.1_4113506_4113845_+	NA	NA|364aa|down_0|NC_011566.1_4116655_4117747_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|195aa|down_1|NC_011566.1_4117798_4118383_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|400aa|down_2|NC_011566.1_4118609_4119809_-	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional	NA|105aa|down_3|NC_011566.1_4120394_4120709_+	NA	NA|476aa|down_4|NC_011566.1_4120804_4122232_+	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|347aa|down_5|NC_011566.1_4122394_4123435_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|157aa|down_6|NC_011566.1_4123427_4123898_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|292aa|down_7|NC_011566.1_4123925_4124801_+	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	NA|519aa|down_8|NC_011566.1_4124836_4126393_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|581aa|down_9|NC_011566.1_4126467_4128210_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
