assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000014785.1_ASM1478v1	NC_008340	Alkalilimnicola ehrlichii MLHE-1, complete genome	1	772510-772656	1	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	Orphan	GGCGGCGTATGGATTGCCACGTCGCTGCGCTCCTCGCAATGACGGGGGTGG	51	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	NA|67aa|up_1|NC_008340.1_770641_770842_-,NA	NA|190aa|up_9|NC_008340.1_760215_760785_+	PRK00529, PRK00529, elongation factor P; Validated	NA|315aa|up_8|NC_008340.1_760798_761743_+	TIGR00462, genX, EF-P lysine aminoacylase GenX	NA|122aa|up_7|NC_008340.1_761750_762116_-	pfam11743, DUF3301, Protein of unknown function (DUF3301)	NA|285aa|up_6|NC_008340.1_762182_763037_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|396aa|up_5|NC_008340.1_763201_764389_+	PRK09051, PRK09051, beta-ketothiolase BktB	NA|727aa|up_4|NC_008340.1_764497_766678_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|545aa|up_3|NC_008340.1_766726_768361_-	pfam08668, HDOD, HDOD domain	NA|669aa|up_2|NC_008340.1_768593_770600_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|67aa|up_1|NC_008340.1_770641_770842_-	NA	NA|459aa|up_0|NC_008340.1_770996_772373_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|298aa|down_0|NC_008340.1_772863_773757_+	COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only]	NA|170aa|down_1|NC_008340.1_773696_774206_-	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|282aa|down_2|NC_008340.1_774205_775051_-	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	NA|577aa|down_3|NC_008340.1_775047_776778_-	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|489aa|down_4|NC_008340.1_777078_778545_+	PRK12806, PRK12806, flagellin; Provisional	NA|922aa|down_5|NC_008340.1_778629_781395_-	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|487aa|down_6|NC_008340.1_781682_783143_+	PRK12806, PRK12806, flagellin; Provisional	NA|130aa|down_7|NC_008340.1_783233_783623_+	pfam03646, FlaG, FlaG protein	NA|144aa|down_8|NC_008340.1_784225_784657_+	pfam03646, FlaG, FlaG protein	NA|472aa|down_9|NC_008340.1_784762_786178_+	PRK08032, fliD, flagellar capping protein; Reviewed
GCF_000014785.1_ASM1478v1	NC_008340	Alkalilimnicola ehrlichii MLHE-1, complete genome	2	783912-784034	2	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	Orphan	GGCAGTCTACCGCTCTGGATCGCCACGGGCCTT	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	NA|67aa|up_9|NC_008340.1_770641_770842_-,NA	NA|67aa|up_9|NC_008340.1_770641_770842_-	NA	NA|459aa|up_8|NC_008340.1_770996_772373_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|298aa|up_7|NC_008340.1_772863_773757_+	COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only]	NA|170aa|up_6|NC_008340.1_773696_774206_-	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|282aa|up_5|NC_008340.1_774205_775051_-	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	NA|577aa|up_4|NC_008340.1_775047_776778_-	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|489aa|up_3|NC_008340.1_777078_778545_+	PRK12806, PRK12806, flagellin; Provisional	NA|922aa|up_2|NC_008340.1_778629_781395_-	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|487aa|up_1|NC_008340.1_781682_783143_+	PRK12806, PRK12806, flagellin; Provisional	NA|130aa|up_0|NC_008340.1_783233_783623_+	pfam03646, FlaG, FlaG protein	NA|144aa|down_0|NC_008340.1_784225_784657_+	pfam03646, FlaG, FlaG protein	NA|472aa|down_1|NC_008340.1_784762_786178_+	PRK08032, fliD, flagellar capping protein; Reviewed	NA|146aa|down_2|NC_008340.1_786826_787264_+	PRK05685, fliS, flagellar export chaperone FliS	NA|112aa|down_3|NC_008340.1_787266_787602_+	pfam05400, FliT, Flagellar protein FliT	NA|470aa|down_4|NC_008340.1_789572_790982_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|109aa|down_5|NC_008340.1_791018_791345_+	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|581aa|down_6|NC_008340.1_791395_793138_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|335aa|down_7|NC_008340.1_793124_794129_+	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|296aa|down_8|NC_008340.1_794154_795042_+	PRK05687, fliH, flagellar assembly protein FliH	NA|459aa|down_9|NC_008340.1_795034_796411_+	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI
GCF_000014785.1_ASM1478v1	NC_008340	Alkalilimnicola ehrlichii MLHE-1, complete genome	3	982106-982251	3	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	Orphan	GGTAGACTGCCGCGTCGGCTTCGCCTCCTCGCAGTGACGGTGGGGGTG	48	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	NA|173aa|up_3|NC_008340.1_978424_978943_+,NA|679aa|down_1|NC_008340.1_983132_985169_-,NA|106aa|down_3|NC_008340.1_987139_987457_+	NA|171aa|up_9|NC_008340.1_973490_974003_+	TIGR02523, probable_type-4_fimbrial_biogenesis_protein, type IV pilus modification protein PilV	NA|213aa|up_8|NC_008340.1_974012_974651_+	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion]	NA|406aa|up_7|NC_008340.1_974663_975881_+	pfam14341, PilX_N, PilX N-terminal	NA|400aa|up_6|NC_008340.1_975943_977143_+	pfam14341, PilX_N, PilX N-terminal	NA|289aa|up_5|NC_008340.1_977152_978019_-	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|100aa|up_4|NC_008340.1_978128_978428_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|173aa|up_3|NC_008340.1_978424_978943_+	NA	NA|241aa|up_2|NC_008340.1_978930_979653_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|310aa|up_1|NC_008340.1_979651_980581_+	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|428aa|up_0|NC_008340.1_980602_981886_+	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein	NA|206aa|down_0|NC_008340.1_982408_983026_-	pfam07027, DUF1318, Protein of unknown function (DUF1318)	NA|679aa|down_1|NC_008340.1_983132_985169_-	NA	NA|612aa|down_2|NC_008340.1_985291_987127_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|106aa|down_3|NC_008340.1_987139_987457_+	NA	NA|309aa|down_4|NC_008340.1_987477_988404_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|758aa|down_5|NC_008340.1_988515_990789_-	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|329aa|down_6|NC_008340.1_990945_991932_-	cd13570, PBP2_TAXI_TRAP_like_2, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|484aa|down_7|NC_008340.1_992235_993687_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|331aa|down_8|NC_008340.1_993752_994745_-	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase	NA|401aa|down_9|NC_008340.1_994991_996194_+	COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
GCF_000014785.1_ASM1478v1	NC_008340	Alkalilimnicola ehrlichii MLHE-1, complete genome	4	1073961-1079602	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	Type I-E	GGTCTATCCCCGCAGGCGCGGGGGAGCC,GGTCTATCCCCGCAGGCGCGGGGGAGCC,GGTCTATCCCCGCAGGCGCGGGGGAGCC	28,28,28	0	0	NA	NA	NA:NA:NA	92,92,91	92	TypeI-E	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	NA,NA	NA|388aa|up_9|NC_008340.1_1062546_1063710_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|159aa|up_8|NC_008340.1_1063706_1064183_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|102aa|up_7|NC_008340.1_1064215_1064521_-	COG3492, COG3492, Uncharacterized protein conserved in bacteria [Function unknown]	NA|603aa|up_6|NC_008340.1_1065081_1066890_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|293aa|up_5|NC_008340.1_1067080_1067959_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|482aa|up_4|NC_008340.1_1067993_1069439_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|274aa|up_3|NC_008340.1_1069508_1070330_-	PRK13674, PRK13674, GTP cyclohydrolase I FolE2	NA|307aa|up_2|NC_008340.1_1070392_1071313_-	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|86aa|up_1|NC_008340.1_1071272_1071530_-	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|631aa|up_0|NC_008340.1_1071702_1073595_+	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	cas2|99aa|down_0|NC_008340.1_1079649_1079946_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|299aa|down_1|NC_008340.1_1079917_1080814_-	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1	cas6e|62aa|down_2|NC_008340.1_1080810_1080996_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|243aa|down_3|NC_008340.1_1081519_1082248_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|386aa|down_4|NC_008340.1_1082247_1083405_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|173aa|down_5|NC_008340.1_1083415_1083934_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|516aa|down_6|NC_008340.1_1083920_1085468_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|872aa|down_7|NC_008340.1_1085464_1088080_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|853aa|down_8|NC_008340.1_1088906_1091465_-	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase	NA|484aa|down_9|NC_008340.1_1091478_1092930_-	PRK00654, glgA, glycogen synthase GlgA
GCF_000014785.1_ASM1478v1	NC_008340	Alkalilimnicola ehrlichii MLHE-1, complete genome	5	1370111-1370251	5	CRISPRCasFinder	no	DinG	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	Type IV-A	GGTAGACTGCCGCGTCGCTTCGCTCCTCGCAGTGACGGGGTGGCCCCTC	49	1	18	1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202|1370160-1370202	NC_008340.1_215122-215080|NC_008340.1_215215-215173|NC_008340.1_2158895-2158853|NC_008340.1_583942-583984|NC_008340.1_584083-584125|NC_008340.1_1064769-1064811|NC_008340.1_1370436-1370478|NC_008340.1_2694474-2694516|NC_008340.1_174297-174255|NC_008340.1_215308-215266|NC_008340.1_215401-215359|NC_008340.1_470373-470331|NC_008340.1_2076825-2076783|NC_008340.1_2170235-2170193|NC_008340.1_2589679-2589637|NC_008340.1_2219877-2219919|NC_008340.1_2698747-2698789|NC_008340.1_2948060-2948102	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	NA|102aa|up_3|NC_008340.1_1368225_1368531_-,NA|104aa|up_0|NC_008340.1_1369668_1369980_+,NA|71aa|down_3|NC_008340.1_1376514_1376727_-,NA|136aa|down_9|NC_008340.1_1381780_1382188_+	NA|148aa|up_9|NC_008340.1_1362947_1363391_+	pfam11026, DUF2721, Protein of unknown function (DUF2721)	NA|428aa|up_8|NC_008340.1_1363401_1364685_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|153aa|up_7|NC_008340.1_1364688_1365147_-	cd02222, cupin_TM1459-like, Thermotoga maritima TM1459 and related proteins, cupin domain	NA|366aa|up_6|NC_008340.1_1365148_1366246_-	cd08210, RLP_RrRLP, Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R	NA|299aa|up_5|NC_008340.1_1366242_1367139_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|366aa|up_4|NC_008340.1_1367131_1368229_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|102aa|up_3|NC_008340.1_1368225_1368531_-	NA	NA|162aa|up_2|NC_008340.1_1368655_1369141_+	PRK09372, PRK09372, ribonuclease E inhibitor RraA	NA|137aa|up_1|NC_008340.1_1369165_1369576_+	PRK10348, PRK10348, ribosome-associated heat shock protein Hsp15; Provisional	NA|104aa|up_0|NC_008340.1_1369668_1369980_+	NA	NA|1026aa|down_0|NC_008340.1_1370676_1373754_-	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|413aa|down_1|NC_008340.1_1373848_1375087_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|435aa|down_2|NC_008340.1_1375172_1376477_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|71aa|down_3|NC_008340.1_1376514_1376727_-	NA	NA|408aa|down_4|NC_008340.1_1376737_1377961_-	pfam04143, Sulf_transp, Sulphur transport	NA|320aa|down_5|NC_008340.1_1378039_1378999_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|470aa|down_6|NC_008340.1_1379256_1380666_+	PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated	NA|158aa|down_7|NC_008340.1_1380733_1381207_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|102aa|down_8|NC_008340.1_1381478_1381784_+	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|136aa|down_9|NC_008340.1_1381780_1382188_+	NA
GCF_000014785.1_ASM1478v1	NC_008340	Alkalilimnicola ehrlichii MLHE-1, complete genome	6	1700054-1700137	6	CRISPRCasFinder	no	WYL,DEDDh	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	Unclear	CCCCGCTGCGCGGGCCCGAATCA	23	1	2	1700077-1700114|1700077-1700114	NC_008340.1_2742144-2742107|NC_008340.1_2742205-2742168	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	NA|120aa|up_9|NC_008340.1_1689061_1689421_-,NA|96aa|up_8|NC_008340.1_1689620_1689908_+,NA|130aa|down_7|NC_008340.1_1707908_1708298_+	NA|120aa|up_9|NC_008340.1_1689061_1689421_-	NA	NA|96aa|up_8|NC_008340.1_1689620_1689908_+	NA	NA|67aa|up_7|NC_008340.1_1690317_1690518_-	PRK01712, PRK01712, carbon storage regulator CsrA	NA|417aa|up_6|NC_008340.1_1690675_1691926_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|870aa|up_5|NC_008340.1_1691994_1694604_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|153aa|up_4|NC_008340.1_1694652_1695111_-	PRK00117, recX, recombination regulator RecX; Reviewed	NA|348aa|up_3|NC_008340.1_1695118_1696162_-	PRK09354, recA, recombinase A; Provisional	NA|169aa|up_2|NC_008340.1_1696295_1696802_-	pfam02464, CinA, Competence-damaged protein	NA|879aa|up_1|NC_008340.1_1696848_1699485_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|108aa|up_0|NC_008340.1_1699592_1699916_+	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|246aa|down_0|NC_008340.1_1700742_1701480_-	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold	NA|305aa|down_1|NC_008340.1_1701576_1702491_-	PRK00283, xerD, tyrosine recombinase	NA|266aa|down_2|NC_008340.1_1702465_1703263_-	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|361aa|down_3|NC_008340.1_1703404_1704487_+	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional	NA|140aa|down_4|NC_008340.1_1704568_1704988_+	pfam02657, SufE, Fe-S metabolism associated domain	NA|290aa|down_5|NC_008340.1_1705356_1706226_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|457aa|down_6|NC_008340.1_1706495_1707866_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|130aa|down_7|NC_008340.1_1707908_1708298_+	NA	NA|237aa|down_8|NC_008340.1_1708426_1709137_+	cd19166, HemeO-bac, heme oxygenase found in pathogenic bacteria	NA|753aa|down_9|NC_008340.1_1708925_1711184_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
GCF_000014785.1_ASM1478v1	NC_008340	Alkalilimnicola ehrlichii MLHE-1, complete genome	7	2780260-2780385	7	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	Orphan	TCATCGCGAGGGCCGGAGGCCCGTGGCGATCCA	33	1	2	2780293-2780352|2780293-2780352	NC_008340.1_295951-295892|NC_008340.1_2567426-2567367	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,WYL,cas6,Cas9_archaeal	NA,NA	NA|332aa|up_9|NC_008340.1_2768535_2769531_-	TIGR00433, biotin_synthase, biotin synthase	NA|263aa|up_8|NC_008340.1_2769920_2770709_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|294aa|up_7|NC_008340.1_2770711_2771593_-	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|187aa|up_6|NC_008340.1_2771598_2772159_-	pfam04345, Chor_lyase, Chorismate lyase	NA|706aa|up_5|NC_008340.1_2772421_2774539_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|128aa|up_4|NC_008340.1_2774803_2775187_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|731aa|up_3|NC_008340.1_2775213_2777406_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|108aa|up_2|NC_008340.1_2777419_2777743_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|204aa|up_1|NC_008340.1_2778372_2778984_-	PRK00300, gmk, guanylate kinase; Provisional	NA|289aa|up_0|NC_008340.1_2779309_2780176_-	PRK11820, PRK11820, YicC family protein	NA|239aa|down_0|NC_008340.1_2780582_2781299_+	PRK00173, rph, ribonuclease PH; Reviewed	NA|204aa|down_1|NC_008340.1_2781344_2781956_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|399aa|down_2|NC_008340.1_2781952_2783149_+	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|66aa|down_3|NC_008340.1_2783192_2783390_+	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG	NA|84aa|down_4|NC_008340.1_2783382_2783634_+	COG4568, Rof, Transcriptional antiterminator [Transcription]	NA|803aa|down_5|NC_008340.1_2783701_2786110_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|438aa|down_6|NC_008340.1_2786272_2787586_-	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	NA|468aa|down_7|NC_008340.1_2787601_2789005_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|422aa|down_8|NC_008340.1_2789077_2790343_-	pfam11723, Aromatic_hydrox, Homotrimeric ring hydroxylase	NA|199aa|down_9|NC_008340.1_2790464_2791061_-	COG3224, COG3224, Uncharacterized protein conserved in bacteria [Function unknown]
