assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	1	275012-275084	1	CRISPRCasFinder	no		cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Orphan	TTTCTTACTAACCCCCCATGGCTC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA|159aa|up_1|NC_008346.1_273912_274389_+,NA|157aa|up_0|NC_008346.1_274425_274896_+,NA	NA|146aa|up_9|NC_008346.1_267464_267902_+	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|333aa|up_8|NC_008346.1_268181_269180_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|311aa|up_7|NC_008346.1_269202_270135_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|390aa|up_6|NC_008346.1_270302_271472_+	TIGR03588, PseC, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA|69aa|up_5|NC_008346.1_271775_271982_+	pfam14070, YjfB_motility, Putative motility protein	NA|123aa|up_4|NC_008346.1_272099_272468_+	TIGR03282, methan_mark_13, putative methanogenesis marker 13 metalloprotein	NA|169aa|up_3|NC_008346.1_272634_273141_+	pfam02561, FliS, Flagellar protein FliS	NA|129aa|up_2|NC_008346.1_273485_273872_+	pfam03646, FlaG, FlaG protein	NA|159aa|up_1|NC_008346.1_273912_274389_+	NA	NA|157aa|up_0|NC_008346.1_274425_274896_+	NA	NA|97aa|down_0|NC_008346.1_275261_275552_+	pfam13451, zf-trcl, Probable zinc-ribbon domain	NA|182aa|down_1|NC_008346.1_275748_276294_+	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|830aa|down_2|NC_008346.1_276387_278877_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|264aa|down_3|NC_008346.1_278876_279668_+	COG1291, MotA, Flagellar motor component [Cell motility and secretion]	NA|282aa|down_4|NC_008346.1_279673_280519_+	COG1360, MotB, Flagellar motor protein [Cell motility and secretion]	NA|345aa|down_5|NC_008346.1_280619_281654_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|251aa|down_6|NC_008346.1_282039_282792_+	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	NA|312aa|down_7|NC_008346.1_282836_283772_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|228aa|down_8|NC_008346.1_283847_284531_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|295aa|down_9|NC_008346.1_284527_285412_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	2	564720-568858	2,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Type I-U,Type I-C, Type I-U?	GTCGCACCCCATGCGGGTGCGTGGATTGAAAC,GTCGCACCCCATGCGGGTGCGTGGATTGAAAC,GTCGCACCCCATGCGGGTGCGTGGATTGAAAC,GTCGCACCCCATGCGGGTGCGTGGATTGAAAC	32,32,32,32	0	0	NA	NA	I-C:I-C:I-C:I-C	61,61,55,55	61	TypeI-U,TypeI-C,TypeI-U?	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA,NA	NA|346aa|up_9|NC_008346.1_553644_554682_+	pfam02618, YceG, YceG-like family	NA|412aa|up_8|NC_008346.1_555023_556259_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|82aa|up_7|NC_008346.1_556248_556494_+	pfam16256, DUF4911, Domain of unknown function (DUF4911)	cas3|717aa|up_6|NC_008346.1_557044_559195_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|221aa|up_5|NC_008346.1_559219_559882_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|601aa|up_4|NC_008346.1_559878_561681_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|289aa|up_3|NC_008346.1_561664_562531_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|244aa|up_2|NC_008346.1_562490_563222_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|343aa|up_1|NC_008346.1_563222_564251_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_008346.1_564263_564554_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|99aa|down_0|NC_008346.1_569049_569346_+	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|351aa|down_1|NC_008346.1_569375_570428_+	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only]	NA|241aa|down_2|NC_008346.1_570661_571384_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|502aa|down_3|NC_008346.1_571380_572886_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|70aa|down_4|NC_008346.1_573064_573274_+	pfam16256, DUF4911, Domain of unknown function (DUF4911)	NA|152aa|down_5|NC_008346.1_573426_573882_-	cd03446, MaoC_like, MoaC_like    Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain	NA|380aa|down_6|NC_008346.1_574112_575252_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|569aa|down_7|NC_008346.1_575667_577374_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|624aa|down_8|NC_008346.1_577550_579422_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|341aa|down_9|NC_008346.1_579437_580460_+	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	3	774767-774858	3	CRISPRCasFinder	no		cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Orphan	GGGATAACACAAAAGAACTGTCCCCTTGTGTC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA|145aa|up_4|NC_008346.1_767116_767551_-,NA|52aa|up_3|NC_008346.1_767709_767865_+,NA	NA|296aa|up_9|NC_008346.1_762801_763689_+	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold	NA|153aa|up_8|NC_008346.1_763847_764306_+	PRK01285, PRK01285, pyruvoyl-dependent arginine decarboxylase; Reviewed	NA|274aa|up_7|NC_008346.1_764327_765149_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|299aa|up_6|NC_008346.1_765264_766161_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|180aa|up_5|NC_008346.1_766427_766967_-	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|145aa|up_4|NC_008346.1_767116_767551_-	NA	NA|52aa|up_3|NC_008346.1_767709_767865_+	NA	NA|332aa|up_2|NC_008346.1_768115_769111_-	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|1489aa|up_1|NC_008346.1_769283_773750_-	pfam14264, Glucos_trans_II, Glucosyl transferase GtrII	NA|127aa|up_0|NC_008346.1_774143_774524_+	PRK03124, PRK03124, S-adenosylmethionine decarboxylase proenzyme; Provisional	NA|403aa|down_0|NC_008346.1_774917_776126_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|253aa|down_1|NC_008346.1_776565_777324_+	pfam00348, polyprenyl_synt, Polyprenyl synthetase	NA|483aa|down_2|NC_008346.1_777452_778901_+	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family	NA|283aa|down_3|NC_008346.1_778893_779742_+	PRK12888, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|207aa|down_4|NC_008346.1_779961_780582_+	PRK05920, PRK05920, aromatic acid decarboxylase; Validated	NA|323aa|down_5|NC_008346.1_780690_781659_+	TIGR02748, Heptaprenyl_diphosphate_synthase_component_2, heptaprenyl diphosphate synthase component II	NA|284aa|down_6|NC_008346.1_781676_782528_+	pfam00902, TatC, Sec-independent protein translocase protein (TatC)	NA|61aa|down_7|NC_008346.1_782700_782883_+	PRK14860, tatA, twin arginine translocase protein A; Provisional	NA|226aa|down_8|NC_008346.1_782948_783626_+	COG1648, CysG, Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]	NA|439aa|down_9|NC_008346.1_783601_784918_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	4	976000-976115	4	CRISPRCasFinder	no		cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Orphan	GGGGGAACAGGGCCAGGAAACCAAAAAAC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA,NA	NA|467aa|up_9|NC_008346.1_964994_966395_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|263aa|up_8|NC_008346.1_966423_967212_+	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|139aa|up_7|NC_008346.1_967376_967793_+	COG1815, FlgB, Flagellar basal body protein [Cell motility and secretion]	NA|156aa|up_6|NC_008346.1_967799_968267_+	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|103aa|up_5|NC_008346.1_968278_968587_+	PRK12728, fliE, flagellar hook-basal body protein FliE; Provisional	NA|541aa|up_4|NC_008346.1_968608_970231_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|281aa|up_3|NC_008346.1_971245_972088_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|443aa|up_2|NC_008346.1_972080_973409_+	TIGR03497, FliI_clade2, flagellar protein export ATPase FliI	NA|150aa|up_1|NC_008346.1_973421_973871_+	COG2882, FliJ, Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]	NA|201aa|up_0|NC_008346.1_974081_974684_+	COG3334, COG3334, Uncharacterized conserved protein [Function unknown]	NA|181aa|down_0|NC_008346.1_977106_977649_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|129aa|down_1|NC_008346.1_977641_978028_+	TIGR02530, conserved_hypothetical_protein, flagellar operon protein	NA|476aa|down_2|NC_008346.1_978140_979568_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|65aa|down_3|NC_008346.1_979684_979879_+	pfam06289, FlbD, Flagellar protein (FlbD)	NA|142aa|down_4|NC_008346.1_979953_980379_+	COG1580, FliL, Flagellar basal body-associated protein [Cell motility and secretion]	NA|329aa|down_5|NC_008346.1_980554_981541_+	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|399aa|down_6|NC_008346.1_981537_982734_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|121aa|down_7|NC_008346.1_982752_983115_+	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY	NA|214aa|down_8|NC_008346.1_983130_983772_+	pfam04347, FliO, Flagellar biosynthesis protein, FliO	NA|261aa|down_9|NC_008346.1_983755_984538_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	5	1519323-1519441	5	CRISPRCasFinder	no		cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Orphan	TATATTCATTACATACAAATACTTATTTTTTT	32	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA|131aa|up_7|NC_008346.1_1513143_1513536_-,NA|357aa|up_6|NC_008346.1_1513931_1515002_-,NA|271aa|up_5|NC_008346.1_1515084_1515897_-,NA|140aa|up_2|NC_008346.1_1517560_1517980_-,NA|58aa|up_0|NC_008346.1_1518235_1518409_-,NA	NA|442aa|up_9|NC_008346.1_1510237_1511563_-	pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like	NA|523aa|up_8|NC_008346.1_1511578_1513147_-	PHA02533, 17, large terminase protein; Provisional	NA|131aa|up_7|NC_008346.1_1513143_1513536_-	NA	NA|357aa|up_6|NC_008346.1_1513931_1515002_-	NA	NA|271aa|up_5|NC_008346.1_1515084_1515897_-	NA	NA|63aa|up_4|NC_008346.1_1516046_1516235_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|399aa|up_3|NC_008346.1_1516337_1517534_-	pfam17236, DUF5309, Family of unknown function (DUF5309)	NA|140aa|up_2|NC_008346.1_1517560_1517980_-	NA	NA|70aa|up_1|NC_008346.1_1517996_1518206_-	pfam10960, Holin_BhlA, BhlA holin family	NA|58aa|up_0|NC_008346.1_1518235_1518409_-	NA	NA|307aa|down_0|NC_008346.1_1520178_1521099_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|407aa|down_1|NC_008346.1_1521388_1522609_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|301aa|down_2|NC_008346.1_1522640_1523543_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|433aa|down_3|NC_008346.1_1523564_1524863_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|472aa|down_4|NC_008346.1_1525037_1526453_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|832aa|down_5|NC_008346.1_1526670_1529166_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|112aa|down_6|NC_008346.1_1529129_1529465_-	smart00091, PAS, PAS domain	NA|493aa|down_7|NC_008346.1_1530135_1531614_-	pfam09547, Spore_IV_A, Stage IV sporulation protein A (spore_IV_A)	NA|344aa|down_8|NC_008346.1_1531772_1532804_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|196aa|down_9|NC_008346.1_1533059_1533647_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	6	1999255-2000383	3,6,2	PILER-CR,CRISPRCasFinder,CRT	no	csm6,cas2,cas1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Type III-C,Type III-D,Type III-B,Type III-A	GTTTCCGTCCCCTTAAAGGGGTCCTTCGTTTTTAAT,GTTTCCGTCCCCTTAAAGGGGTCCTTCGTTTTTAAT,GTTTCCGTCCCCTTAAAGGGGTCCTTCGTTTTTAAT	36,36,36	0	0	NA	NA	NA:NA:NA	15,15,15	15	TypeIII-C,TypeIII-D,TypeIII-B,TypeIII-A	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA|67aa|up_9|NC_008346.1_1984925_1985126_+,NA	NA|67aa|up_9|NC_008346.1_1984925_1985126_+	NA	NA|196aa|up_8|NC_008346.1_1985107_1985695_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|522aa|up_7|NC_008346.1_1988360_1989926_-	pfam00395, SLH, S-layer homology domain	NA|408aa|up_6|NC_008346.1_1990103_1991327_-	COG1520, COG1520, FOG: WD40-like repeat [Function unknown]	NA|445aa|up_5|NC_008346.1_1991347_1992682_-	TIGR03948, hypothetical_protein_FAEPRAM212_02812, butyryl-CoA:acetate CoA-transferase	NA|571aa|up_4|NC_008346.1_1993023_1994736_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	csm6|414aa|up_3|NC_008346.1_1994951_1996193_-	cd09746, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|407aa|up_2|NC_008346.1_1996473_1997694_-	pfam05598, DUF772, Transposase domain (DUF772)	cas2|110aa|up_1|NC_008346.1_1997890_1998220_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|337aa|up_0|NC_008346.1_1998216_1999227_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|426aa|down_0|NC_008346.1_2000509_2001787_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas6|250aa|down_1|NC_008346.1_2002711_2003461_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|381aa|down_2|NC_008346.1_2003611_2004754_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|316aa|down_3|NC_008346.1_2004750_2005698_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|232aa|down_4|NC_008346.1_2005672_2006368_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|159aa|down_5|NC_008346.1_2006387_2006864_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|809aa|down_6|NC_008346.1_2006856_2009283_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|549aa|down_7|NC_008346.1_2009535_2011182_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|230aa|down_8|NC_008346.1_2012640_2013330_-	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|681aa|down_9|NC_008346.1_2013511_2015554_+	pfam09826, Beta_propel, Beta propeller domain
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	7	2002263-2002514	4,7,3	PILER-CR,CRISPRCasFinder,CRT	no	csm6,cas2,cas1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Type III-C,Type III-D,Type III-B,Type III-A	GTTTCCGTCCCCTTAAAGGGGTCCTTCGTTTTTAAT,GTTTCCGTCCCCTTAAAGGGGTCCTTCGTTTTTAAT,GTTTCCGTCCCCTTAAAGGGGTCCTTCGTTTTTAAT	36,36,36	0	0	NA	NA	NA:NA:NA	3,3,3	3	TypeIII-C,TypeIII-D,TypeIII-B,TypeIII-A	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA,NA	NA|196aa|up_9|NC_008346.1_1985107_1985695_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|522aa|up_8|NC_008346.1_1988360_1989926_-	pfam00395, SLH, S-layer homology domain	NA|408aa|up_7|NC_008346.1_1990103_1991327_-	COG1520, COG1520, FOG: WD40-like repeat [Function unknown]	NA|445aa|up_6|NC_008346.1_1991347_1992682_-	TIGR03948, hypothetical_protein_FAEPRAM212_02812, butyryl-CoA:acetate CoA-transferase	NA|571aa|up_5|NC_008346.1_1993023_1994736_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	csm6|414aa|up_4|NC_008346.1_1994951_1996193_-	cd09746, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|407aa|up_3|NC_008346.1_1996473_1997694_-	pfam05598, DUF772, Transposase domain (DUF772)	cas2|110aa|up_2|NC_008346.1_1997890_1998220_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|337aa|up_1|NC_008346.1_1998216_1999227_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|426aa|up_0|NC_008346.1_2000509_2001787_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas6|250aa|down_0|NC_008346.1_2002711_2003461_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|381aa|down_1|NC_008346.1_2003611_2004754_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|316aa|down_2|NC_008346.1_2004750_2005698_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|232aa|down_3|NC_008346.1_2005672_2006368_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|159aa|down_4|NC_008346.1_2006387_2006864_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|809aa|down_5|NC_008346.1_2006856_2009283_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|549aa|down_6|NC_008346.1_2009535_2011182_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|230aa|down_7|NC_008346.1_2012640_2013330_-	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|681aa|down_8|NC_008346.1_2013511_2015554_+	pfam09826, Beta_propel, Beta propeller domain	NA|255aa|down_9|NC_008346.1_2015875_2016640_-	pfam13739, DUF4163, Domain of unknown function (DUF4163)
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	8	2055857-2058259	5,8,4,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Type I-B	ATTTCAATACATCAAATGTGCCGGTTCCGC,ATTTCAATACATCAAATGTGCCGGTTCCGC,ATTTCAATACATCAAATGTGCCGGTTCCGC,ATTTCAATACATCAAATGTGCCGGTTCCGC	30,30,30,30	0	0	NA	NA	NA:NA:NA:NA	33,36,36,33	36	TypeI-B	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA,cas8b1|588aa|down_6|NC_008346.1_2064531_2066295_-,NA|438aa|down_8|NC_008346.1_2067762_2069076_+	NA|191aa|up_9|NC_008346.1_2045894_2046467_-	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family	NA|103aa|up_8|NC_008346.1_2046620_2046929_-	TIGR03793, TOMM_pelo, NHLP leader peptide domain	NA|448aa|up_7|NC_008346.1_2047443_2048787_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|135aa|up_6|NC_008346.1_2048787_2049192_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|111aa|up_5|NC_008346.1_2049227_2049560_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|783aa|up_4|NC_008346.1_2049581_2051930_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|176aa|up_3|NC_008346.1_2052130_2052658_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|219aa|up_2|NC_008346.1_2052950_2053607_+	pfam00395, SLH, S-layer homology domain	NA|274aa|up_1|NC_008346.1_2053725_2054547_+	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|267aa|up_0|NC_008346.1_2054712_2055513_-	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	cas2|96aa|down_0|NC_008346.1_2058438_2058726_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|334aa|down_1|NC_008346.1_2058722_2059724_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|163aa|down_2|NC_008346.1_2059888_2060377_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|795aa|down_3|NC_008346.1_2060376_2062761_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|247aa|down_4|NC_008346.1_2062820_2063561_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|328aa|down_5|NC_008346.1_2063573_2064557_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|588aa|down_6|NC_008346.1_2064531_2066295_-	NA	NA|231aa|down_7|NC_008346.1_2066299_2066992_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|438aa|down_8|NC_008346.1_2067762_2069076_+	NA	NA|376aa|down_9|NC_008346.1_2069072_2070200_+	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated
GCF_000014725.1_ASM1472v1	NC_008346	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete sequence	9	2856131-2868370	9,5,7,8	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,csm3gr7,csx19,cas10,csx1	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	Type I-B,Type III-A,Type III-C,Type III-B,Type III-D	GTTTCAATCCCCTATACGCGGGTCACAAAC,GTTTCAATCCCCTATACGCGGGTCACAAAC,GTTTCAATCCCCTATACGCGGGTCACAAAC,GTTTCAATCCCCTATACGCGGGTCACAAAC	30,30,30,30	0	0	NA	NA	NA:NA:NA:NA	185,185,67,67	185	TypeI-B,TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DinG,WYL,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas7b,cas8b1,csx19,csx1,csx15	NA|121aa|up_9|NC_008346.1_2852028_2852391_-,NA|73aa|up_3|NC_008346.1_2854489_2854708_-,NA	NA|121aa|up_9|NC_008346.1_2852028_2852391_-	NA	NA|58aa|up_8|NC_008346.1_2852440_2852614_-	TIGR02653, putative_ATP-dependent_Lon_protease, conserved hypothetical protein	NA|121aa|up_7|NC_008346.1_2852721_2853084_-	pfam18480, DUF5615, Domain of unknown function (DUF5615)	NA|73aa|up_6|NC_008346.1_2853088_2853307_-	COG2442, COG2442, Uncharacterized conserved protein [Function unknown]	NA|73aa|up_5|NC_008346.1_2853486_2853705_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|81aa|up_4|NC_008346.1_2853915_2854158_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|73aa|up_3|NC_008346.1_2854489_2854708_-	NA	NA|85aa|up_2|NC_008346.1_2854787_2855042_-	pfam13683, rve_3, Integrase core domain	NA|113aa|up_1|NC_008346.1_2855054_2855393_-	pfam00665, rve, Integrase core domain	NA|105aa|up_0|NC_008346.1_2855716_2856031_-	pfam01527, HTH_Tnp_1, Transposase	cas6|314aa|down_0|NC_008346.1_2868617_2869559_-	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas2|88aa|down_1|NC_008346.1_2869611_2869875_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_2|NC_008346.1_2869887_2870880_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|169aa|down_3|NC_008346.1_2870899_2871406_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|782aa|down_4|NC_008346.1_2871405_2873751_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|242aa|down_5|NC_008346.1_2873740_2874466_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|302aa|down_6|NC_008346.1_2874471_2875377_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|162aa|down_7|NC_008346.1_2875378_2875864_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas8b1|481aa|down_8|NC_008346.1_2875818_2877261_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	NA|207aa|down_9|NC_008346.1_2877526_2878147_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family
