The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008532	Streptococcus thermophilus LMD-9, complete sequence	1856368	53035	127673	1856368	tRNA,transposase,protease	Streptococcus_phage(33.33%)	57	NA	NA
WP_011226739.1|53035_54727_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.7	8.1e-77
WP_024704313.1|54881_55310_+	arginine repressor	NA	NA	NA	NA	NA
WP_011225277.1|55309_55669_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_011680597.1|55661_58220_+	DNA mismatch repair protein MutS	NA	A0A2P0VN50	Tetraselmis_virus	25.0	4.7e-36
WP_011680598.1|58253_58709_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_014621013.1|59320_59626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680601.1|59677_61621_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	1.1e-61
WP_011680602.1|61750_61972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680603.1|62123_62714_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_011680604.1|62720_63275_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_011680605.1|63370_64642_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_011680606.1|64677_65817_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.2e-118
WP_002949058.1|65993_66392_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_011680607.1|72797_77192_+	DNA polymerase III subunit alpha	NA	A0A0A7RWA3	Clostridium_phage	36.5	4.0e-19
WP_011680608.1|77355_78597_+	aminopeptidase	NA	NA	NA	NA	NA
WP_011680609.1|78616_78847_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011225289.1|79496_80048_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_158308212.1|81000_81201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680612.1|82955_83723_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002949105.1|83840_84881_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_011680613.1|84990_85461_-	small multi-drug export protein	NA	NA	NA	NA	NA
WP_002949111.1|85704_86160_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011680614.1|86160_88611_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.1	2.5e-127
WP_095559203.1|90194_91764_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_014621034.1|91827_93075_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	24.8	5.5e-14
WP_011680617.1|93283_95509_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_011680618.1|95517_96288_+	SseB family protein	NA	NA	NA	NA	NA
WP_002948444.1|96360_96981_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_011680619.1|97362_98706_+|tRNA	cysteine--tRNA ligase	tRNA	F1C979	Terra1_virus	37.2	5.7e-49
WP_011680620.1|98698_99100_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_002948458.1|99381_99537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680621.1|99612_99801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680622.1|99871_100114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011225307.1|100161_100905_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_014607853.1|100907_101423_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_011680624.1|101431_102292_+	DegV family protein	NA	NA	NA	NA	NA
WP_011680625.1|102592_103093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011226761.1|103240_104197_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_002886374.1|104405_104852_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_002947796.1|104879_105272_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_023909322.1|105746_106010_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SAF1	Streptococcus_phage	65.6	7.0e-28
WP_011225312.1|106259_106364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680626.1|106406_108122_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_011680631.1|111875_113132_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	55.6	1.0e-124
WP_011680632.1|113499_114180_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.2	1.0e-107
WP_011680633.1|114896_115067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680634.1|115090_116746_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011680635.1|116848_117907_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004261408.1|117906_118860_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011680636.1|118856_120554_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.9	2.2e-18
WP_041827624.1|120648_120882_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011680637.1|121046_121997_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011680638.1|121993_122674_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.2	1.4e-109
WP_011680639.1|122831_124025_-	glycosyltransferase	NA	M1HTE2	Paramecium_bursaria_Chlorella_virus	30.5	2.9e-44
WP_041827626.1|124092_125256_-	nucleotide sugar dehydrogenase	NA	M1HV26	Paramecium_bursaria_Chlorella_virus	50.7	3.0e-99
WP_011680641.1|125382_126639_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.8	7.0e-126
WP_162465557.1|126990_127673_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	96.5	4.6e-124
>prophage 2
NC_008532	Streptococcus thermophilus LMD-9, complete sequence	1856368	616045	629094	1856368		Streptococcus_phage(77.78%)	12	NA	NA
WP_004197422.1|616045_617047_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	3.7e-21
WP_014608125.1|617105_617303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011680937.1|618185_619301_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	99.6	5.2e-157
WP_011680938.1|619347_619803_-	YueI family protein	NA	W6LLD2	Streptococcus_phage	98.0	2.2e-77
WP_011680939.1|620011_621316_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	1.4e-246
WP_011680940.1|621467_621653_-	hypothetical protein	NA	W6LMT3	Streptococcus_phage	96.7	3.0e-25
WP_002947233.1|621814_624001_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.2	0.0e+00
WP_002950251.1|624162_625326_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.5	5.9e-220
WP_002947238.1|625322_626000_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	100.0	1.9e-122
WP_011680943.1|625989_626847_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_011680944.1|626859_627927_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_011225712.1|627927_629094_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.9	1.6e-39
>prophage 3
NC_008532	Streptococcus thermophilus LMD-9, complete sequence	1856368	727210	736134	1856368		Bacillus_phage(50.0%)	8	NA	NA
WP_002948474.1|727210_727816_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.7	8.0e-19
WP_011227085.1|727910_729161_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	2.0e-96
WP_014608183.1|729167_730145_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_041827677.1|730146_730758_+	lysozyme family protein	NA	A0A1B1PAG2	Bacillus_phage	42.3	7.8e-22
WP_011681019.1|730790_732530_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.6e-46
WP_011681020.1|732519_734268_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	7.1e-52
WP_002885174.1|734443_734575_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_011681022.1|734583_736134_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.3	2.0e-42
>prophage 4
NC_008532	Streptococcus thermophilus LMD-9, complete sequence	1856368	743308	815719	1856368	tRNA,transposase,integrase	Streptococcus_phage(40.54%)	64	745158:745175	756546:756563
WP_011681026.1|743308_745027_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	36.2	2.1e-27
745158:745175	attL	GATTTTAGAGGGAAATAT	NA	NA	NA	NA
WP_162484320.1|746747_746954_-	hypothetical protein	NA	A0A059NT56	Lactococcus_phage	83.8	9.0e-23
WP_011681029.1|747072_747603_-	hypothetical protein	NA	Q77S00	Lactococcus_phage	89.8	2.9e-57
WP_011681030.1|747666_748254_-	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	96.9	6.0e-104
WP_011681031.1|748636_749086_-	hypothetical protein	NA	F8HGP5	Streptococcus_phage	67.2	6.6e-18
WP_011681032.1|749304_749580_-	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	45.2	4.6e-14
WP_011681033.1|749596_749782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_179970828.1|750077_751571_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	36.8	3.2e-61
WP_011681036.1|751572_752433_-	primase alpha helix C-terminal domain-containing protein	NA	A0A1X9I6L2	Streptococcus_phage	61.1	1.3e-99
WP_011681037.1|752447_752720_-	MerR family transcriptional regulator	NA	A0A1X9I5U9	Streptococcus_phage	50.6	1.0e-18
WP_041827827.1|752707_753034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681039.1|753050_753287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681040.1|753300_753507_-	hypothetical protein	NA	A0A1X9I725	Streptococcus_phage	43.9	9.0e-07
WP_041827685.1|754025_754223_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	60.0	1.2e-13
WP_011681043.1|754351_755200_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011681044.1|755279_756446_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.3	1.1e-154
WP_011225805.1|756561_756897_+	hypothetical protein	NA	NA	NA	NA	NA
756546:756563	attR	GATTTTAGAGGGAAATAT	NA	NA	NA	NA
WP_002950451.1|757224_759474_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_014621437.1|759662_760538_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_011681046.1|760677_762396_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	83.2	2.2e-271
WP_011681047.1|762478_763051_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_014608202.1|763078_763624_-	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	35.6	4.4e-24
WP_002948206.1|763616_764300_-	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_011681048.1|764493_766164_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_011225813.1|767014_767314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011225814.1|767391_767715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095559203.1|768536_770106_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_011681050.1|771867_772938_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011681051.1|773055_774594_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_011681052.1|775418_780275_+	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	27.7	4.3e-06
WP_101415600.1|780400_781970_+|transposase	IS3 family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	51.3	4.0e-54
WP_011681055.1|782143_783400_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.0	9.0e-166
WP_002947597.1|783499_783736_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_002950487.1|783804_784725_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	36.6	3.8e-36
WP_002950490.1|785047_785638_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002950496.1|787589_787988_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_024704314.1|788056_789121_+	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	38.1	2.3e-53
WP_002950502.1|789234_790773_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.4	1.5e-16
WP_002950506.1|790765_791833_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681056.1|791834_792791_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681057.1|792894_793530_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	60.5	4.5e-73
WP_014608206.1|793624_796111_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	47.6	1.5e-212
WP_011681058.1|796255_796738_+	DUF5590 domain-containing protein	NA	NA	NA	NA	NA
WP_004197254.1|796742_797924_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_011681059.1|797960_799307_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.8	1.9e-57
WP_014608211.1|800275_800482_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	55.9	2.9e-13
WP_002950526.1|800823_801204_+	RidA family protein	NA	NA	NA	NA	NA
WP_011681062.1|801378_802032_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	56.8	5.7e-63
WP_002950528.1|802031_802475_+	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	55.6	7.9e-40
WP_011225834.1|802467_803184_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	48.1	1.8e-62
WP_002946191.1|803303_803795_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
WP_011225836.1|804614_804803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011227118.1|805007_805778_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_011225838.1|805758_806649_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_011227120.1|806645_807620_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.5	8.9e-137
WP_002945081.1|807616_808528_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
WP_011227121.1|808545_808767_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_101361296.1|808726_809296_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_011225841.1|809302_809539_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_002944716.1|809838_810039_+	cold shock domain-containing protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.1e-12
WP_011681063.1|810318_810519_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	89.4	2.9e-26
WP_002947843.1|810849_812025_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.8	1.8e-35
WP_011681064.1|812145_814344_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	3.2e-65
WP_011681065.1|814543_815719_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.8	1.8e-35
>prophage 5
NC_008532	Streptococcus thermophilus LMD-9, complete sequence	1856368	1262837	1324605	1856368	tRNA,transposase	Bacillus_phage(12.5%)	43	NA	NA
WP_095559508.1|1262837_1264177_-|transposase	IS3-like element ISSth6 family transposase	transposase	A0A1B1P773	Bacillus_phage	51.5	3.3e-65
WP_011681388.1|1264412_1264571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681391.1|1265635_1268815_-	SMC family ATPase	NA	M4QHD2	Prochlorococcus_phage	24.1	1.1e-05
WP_011681392.1|1268811_1270020_-	exonuclease SbcCD subunit D	NA	D9J0R3	Brochothrix_phage	22.3	5.3e-06
WP_011226267.1|1270874_1273955_-	DUF4981 domain-containing protein	NA	L0N6M2	Herpes_simplex_virus	32.5	1.3e-144
WP_011681393.1|1273958_1275863_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_011226269.1|1275965_1277012_-	galactose-1-epimerase	NA	NA	NA	NA	NA
WP_011681394.1|1277081_1278083_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.0	8.0e-48
WP_014621782.1|1278112_1279594_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_011681396.1|1279613_1280780_-	galactokinase	NA	NA	NA	NA	NA
WP_011681397.1|1280922_1281918_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_087010049.1|1282397_1282487_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_014608522.1|1282499_1282691_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.0	1.3e-07
WP_004197624.1|1282712_1282901_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002951370.1|1285043_1285325_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	31.7	7.2e-07
WP_011681400.1|1286921_1289186_+	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA	NA	NA	NA	NA
WP_011681401.1|1290497_1292912_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	50.9	4.7e-86
WP_011226284.1|1293064_1294063_-	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	48.4	5.4e-28
WP_011226285.1|1294064_1294784_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_011681402.1|1294773_1295292_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002951384.1|1295963_1296608_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011226289.1|1297604_1298303_-	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_011681404.1|1299361_1301233_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	B5LWE2	Feldmannia_species_virus	29.9	1.4e-21
WP_011681405.1|1301232_1301970_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_014608533.1|1302013_1303336_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_014608534.1|1303325_1304261_-|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
WP_011681408.1|1304278_1306675_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_002951415.1|1306816_1307131_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_011681409.1|1307152_1307782_-	guanylate kinase	NA	S4VT50	Pandoravirus	44.2	3.2e-10
WP_011681410.1|1308014_1309406_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_011681411.1|1309416_1310235_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_011681412.1|1310227_1311022_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011681413.1|1311206_1311584_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011226301.1|1311588_1312287_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	26.2	8.1e-07
WP_011681414.1|1312298_1313084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011681415.1|1313137_1314067_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	2.2e-20
WP_011226304.1|1314059_1315145_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.4	5.1e-16
WP_002946409.1|1315154_1316081_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681416.1|1316080_1317574_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011681417.1|1317635_1319603_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011681418.1|1319958_1321143_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	53.2	5.1e-110
WP_011681419.1|1321180_1323154_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_095559415.1|1323458_1324605_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
>prophage 6
NC_008532	Streptococcus thermophilus LMD-9, complete sequence	1856368	1454387	1463334	1856368	transposase	Acinetobacter_phage(50.0%)	8	NA	NA
WP_011681518.1|1454387_1455155_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.2	6.3e-29
WP_011681519.1|1455151_1456156_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.3	2.1e-48
WP_011681520.1|1456246_1456813_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	45.1	3.8e-39
WP_011681521.1|1456809_1458165_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	29.9	8.0e-35
WP_011681522.1|1458241_1458523_-	chorismate mutase	NA	NA	NA	NA	NA
WP_011681055.1|1459116_1460373_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.0	9.0e-166
WP_023909885.1|1460541_1460892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681524.1|1460973_1463334_-	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.4	1.3e-35
>prophage 7
NC_008532	Streptococcus thermophilus LMD-9, complete sequence	1856368	1488020	1539428	1856368	tRNA,protease,bacteriocin	Bacillus_virus(25.0%)	57	NA	NA
WP_011681541.1|1488020_1489463_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_011681542.1|1489462_1490929_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002884769.1|1490928_1491231_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_041827766.1|1491370_1491625_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_187145727.1|1492162_1493575_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_041827768.1|1493756_1494266_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_011681545.1|1494277_1495126_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002946999.1|1495249_1495801_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.3	2.6e-24
WP_002951720.1|1495863_1496649_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_002951721.1|1496908_1498123_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002946987.1|1498477_1498930_+	universal stress protein	NA	NA	NA	NA	NA
WP_011681546.1|1499752_1499926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681547.1|1499986_1500361_-	membrane protein	NA	NA	NA	NA	NA
WP_002946980.1|1500572_1501373_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	31.8	2.9e-24
WP_157821721.1|1501560_1501689_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002951727.1|1502368_1503700_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_011226459.1|1503810_1504593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	5.9e-14
WP_011681548.1|1505214_1507281_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_011226461.1|1507289_1507532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011226462.1|1507528_1508077_-	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	44.1	3.5e-37
WP_011226463.1|1508073_1509018_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	48.3	8.6e-36
WP_011681549.1|1509102_1510179_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_011681550.1|1510156_1510654_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	28.8	1.1e-13
WP_011226466.1|1510687_1511236_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011226467.1|1511377_1512298_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.0	4.7e-87
WP_002951743.1|1512363_1512588_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_011681551.1|1512802_1513546_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.3e-30
WP_100284797.1|1513545_1514292_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011681553.1|1514679_1515510_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002947030.1|1515969_1516203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681554.1|1516500_1517604_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011226473.1|1517882_1520192_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.4	8.1e-112
WP_011681555.1|1520458_1521241_+	carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_014608655.1|1521291_1521744_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014621914.1|1522094_1522400_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011681558.1|1523377_1524133_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_011681559.1|1524129_1524780_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.5	1.1e-21
WP_002951776.1|1524982_1525939_-	serine hydrolase	NA	NA	NA	NA	NA
WP_011681560.1|1525938_1526694_-	CppA family protein	NA	NA	NA	NA	NA
WP_014608659.1|1526975_1527338_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002951781.1|1527424_1528288_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	34.4	3.9e-27
WP_011681561.1|1528408_1530676_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_002951783.1|1530755_1531136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002945924.1|1531260_1531524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197070.1|1531845_1532142_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011681562.1|1532306_1532513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681563.1|1532543_1533233_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_011681564.1|1533419_1533599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003094909.1|1533627_1534020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681565.1|1534031_1534271_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011681568.1|1535777_1535939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011226494.1|1535945_1536176_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011681569.1|1536531_1536732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011681570.1|1536750_1536927_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011681571.1|1537177_1537915_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	21.3	5.4e-09
WP_011681572.1|1537908_1539249_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_011681573.1|1539266_1539428_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 8
NC_008532	Streptococcus thermophilus LMD-9, complete sequence	1856368	1834007	1849579	1856368	tRNA	Streptococcus_phage(30.0%)	15	NA	NA
WP_011681757.1|1834007_1834637_-	hypothetical protein	NA	Q4Z8Z7	Staphylococcus_phage	45.2	3.6e-22
WP_011226701.1|1834876_1835431_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	42.2	3.1e-25
WP_011226702.1|1835734_1836529_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_002947774.1|1836521_1837364_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.2	2.1e-17
WP_011681758.1|1837339_1838170_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	5.8e-20
WP_011681759.1|1838182_1838725_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_011681760.1|1838737_1839595_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011681761.1|1839653_1840931_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	28.3	9.6e-22
WP_011681762.1|1840932_1842183_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	39.9	3.9e-92
WP_002947785.1|1842260_1842638_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	1.7e-22
WP_002947786.1|1842640_1843741_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_011227627.1|1843909_1845391_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	6.8e-96
WP_011681763.1|1845567_1846590_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011681764.1|1847017_1847890_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.6	4.8e-33
WP_011226709.1|1847956_1849579_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.3	5.4e-46
