The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008533	Streptococcus pneumoniae D39, complete sequence	2046116	41901	53357	2046116		Synechococcus_phage(33.33%)	7	NA	NA
WP_000668290.1|41901_44055_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
WP_000801613.1|44067_45417_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043299.1|45586_46294_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	38.8	6.7e-41
WP_000361172.1|46495_50221_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
WP_000220650.1|50313_51756_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	2.6e-55
WP_000182582.1|51792_52815_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.6e-64
WP_000717506.1|52811_53357_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
NC_008533	Streptococcus pneumoniae D39, complete sequence	2046116	105196	137520	2046116	tRNA,bacteriocin	Planktothrix_phage(33.33%)	31	NA	NA
WP_073077611.1|105196_105490_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000723959.1|105544_107653_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|107649_108291_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038474.1|108496_109303_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001814401.1|109319_110516_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001107614.1|110544_111936_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001268172.1|112224_113088_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000915344.1|113553_113775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000093185.1|113907_115773_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.7	2.5e-39
WP_001096142.1|115765_116233_+	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_000781030.1|116229_117582_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000424424.1|117727_118108_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_001811647.1|118610_118931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424429.1|119687_120059_+|bacteriocin	SPH_0218 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000909533.1|120066_120279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001812342.1|121083_122142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000792249.1|122455_123433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424414.1|123809_124184_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000511668.1|124190_124373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000619760.1|124391_125294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424442.1|125349_125703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072891.1|125699_126428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770317.1|127562_127802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001819759.1|127786_128065_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	50.5	2.5e-20
WP_001035315.1|128355_130215_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282986.1|130615_131737_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193624.1|131877_132333_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000639151.1|132342_134256_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331983.1|134635_136315_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639589.1|136316_136550_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000977347.1|137367_137520_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 3
NC_008533	Streptococcus pneumoniae D39, complete sequence	2046116	306101	360421	2046116	transposase,holin,protease	Streptococcus_phage(30.77%)	47	NA	NA
WP_001063452.1|306101_308207_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.7	3.4e-117
WP_000032550.1|308502_308985_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743599.1|309079_310564_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_001156772.1|310716_312324_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_001022228.1|312482_312656_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_000091085.1|313744_315190_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	59.6	3.4e-132
WP_000567603.1|315191_315923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000664148.1|315931_316624_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	58.1	4.2e-64
WP_001142534.1|316633_317314_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	61.9	8.0e-76
WP_001013647.1|317328_318696_+	sugar transferase	NA	NA	NA	NA	NA
WP_000750328.1|318727_319912_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_048901999.1|319877_320849_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000700123.1|320864_321911_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_011681776.1|321951_323115_+	membrane protein	NA	NA	NA	NA	NA
WP_000167408.1|323244_324402_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000091276.1|324398_325808_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_000685095.1|325843_327082_+	nucleotide sugar dehydrogenase	NA	M1I6D5	Acanthocystis_turfacea_Chlorella_virus	49.9	3.3e-104
WP_001819836.1|327110_327716_+	UDP-galactopuranose mutase	NA	E4ZFQ1	Streptococcus_phage	62.6	1.7e-69
WP_000676152.1|327793_328663_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	64.6	2.2e-102
WP_000131446.1|328663_329257_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
WP_000141499.1|329269_330319_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
WP_000600899.1|330384_331236_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.5e-26
WP_033682340.1|331332_331758_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000248706.1|331760_332210_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001811052.1|332280_332439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000842604.1|332640_334623_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001032523.1|334922_340226_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001040011.1|340392_342552_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248787.1|342548_343145_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
WP_000179549.1|343210_343738_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000146522.1|343807_344137_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711391.1|344622_345780_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039255.1|345792_347187_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158781.1|347262_348687_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
WP_000518011.1|348698_349388_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000771103.1|349485_350502_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_000163321.1|350623_351502_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_000373458.1|351483_352437_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_000562411.1|352423_353431_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_000210629.1|353414_354425_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_001224634.1|354502_355201_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_000743667.1|355197_356193_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000698434.1|356206_356839_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_075218746.1|357006_357318_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_001819829.1|357758_357953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771073.1|358922_359807_+|holin	choline-binding protein CbpF	holin	NA	NA	NA	NA
WP_000598719.1|360067_360421_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	48.9	1.8e-15
>prophage 4
NC_008533	Streptococcus pneumoniae D39, complete sequence	2046116	838511	848049	2046116		Streptococcus_phage(88.89%)	10	NA	NA
WP_000728289.1|838511_840395_+	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	22.1	4.0e-08
WP_010976490.1|840474_841605_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
WP_000254686.1|841614_842877_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
WP_000689711.1|842880_843678_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
WP_000033364.1|843793_844432_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
WP_000806712.1|844428_845319_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
WP_000358228.1|845358_845676_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166880.1|845678_846548_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
WP_001261452.1|846774_847293_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_001819936.1|847401_848049_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
>prophage 5
NC_008533	Streptococcus pneumoniae D39, complete sequence	2046116	1308294	1314072	2046116		Streptococcus_phage(50.0%)	9	NA	NA
WP_001272961.1|1308294_1308906_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855753.1|1308950_1309679_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272302.1|1309717_1310629_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
WP_000926599.1|1310694_1310919_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1310996_1311740_-	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.4	1.6e-13
WP_001103449.1|1311739_1312540_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1312697_1313054_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170347.1|1313047_1313578_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000405853.1|1313577_1314072_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	51.5	5.5e-42
>prophage 6
NC_008533	Streptococcus pneumoniae D39, complete sequence	2046116	1414145	1420899	2046116	protease	Streptococcus_phage(50.0%)	8	NA	NA
WP_000080996.1|1414145_1415114_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	99.2	1.1e-65
WP_000011306.1|1415147_1416059_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
WP_001231087.1|1416055_1417033_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
WP_000163025.1|1417029_1417920_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
WP_001140412.1|1417971_1418352_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1418362_1418950_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1418958_1420191_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_000162439.1|1420392_1420899_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.8	1.0e-27
>prophage 7
NC_008533	Streptococcus pneumoniae D39, complete sequence	2046116	1662445	1669777	2046116		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000167846.1|1662445_1663147_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	35.7	4.6e-34
WP_000777248.1|1663569_1664529_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
WP_001193676.1|1664518_1665475_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764310.1|1665471_1666224_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.2	3.7e-13
WP_000858246.1|1666319_1667285_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821615.1|1667509_1667752_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	7.8e-18
WP_001222228.1|1667751_1668474_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1668460_1669030_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1669048_1669777_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 8
NC_008533	Streptococcus pneumoniae D39, complete sequence	2046116	2023773	2032527	2046116		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510406.1|2023773_2024613_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	8.2e-14
WP_000835715.1|2024597_2025425_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
WP_000712132.1|2025421_2025967_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227958.1|2025977_2026799_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170194.1|2026840_2028124_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	1.1e-17
WP_000424263.1|2028120_2029371_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	3.5e-93
WP_000455903.1|2029529_2029898_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266662.1|2029900_2030998_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2031048_2032527_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
