assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000014145.1_ASM1414v1	NC_008255	Cytophaga hutchinsonii ATCC 33406, complete sequence	1	1148705-1148799	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG,cas6,PD-DExK	Orphan	TCTATAAATGCTTCTGAAAGTATTTG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG,cas6,PD-DExK	NA|80aa|up_9|NC_008255.1_1135832_1136072_-,NA|142aa|up_0|NC_008255.1_1148074_1148500_+,NA|138aa|down_9|NC_008255.1_1159856_1160270_+	NA|80aa|up_9|NC_008255.1_1135832_1136072_-	NA	NA|435aa|up_8|NC_008255.1_1136569_1137874_+	PRK06855, PRK06855, pyridoxal phosphate-dependent aminotransferase	NA|697aa|up_7|NC_008255.1_1137968_1140059_-	pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling	NA|291aa|up_6|NC_008255.1_1140051_1140924_-	pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel	NA|135aa|up_5|NC_008255.1_1140920_1141325_-	cd03449, R_hydratase, (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway	NA|362aa|up_4|NC_008255.1_1141326_1142412_-	COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]	NA|634aa|up_3|NC_008255.1_1142550_1144452_-	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|286aa|up_2|NC_008255.1_1145052_1145910_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|587aa|up_1|NC_008255.1_1146143_1147904_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|142aa|up_0|NC_008255.1_1148074_1148500_+	NA	NA|92aa|down_0|NC_008255.1_1149217_1149493_+	TIGR02397, DNA_polymerase_III_subunit_gamma, DNA polymerase III, subunit gamma and tau	NA|323aa|down_1|NC_008255.1_1149580_1150549_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|379aa|down_2|NC_008255.1_1150785_1151922_+	pfam07610, DUF1573, Protein of unknown function (DUF1573)	NA|544aa|down_3|NC_008255.1_1152115_1153747_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|271aa|down_4|NC_008255.1_1153729_1154542_-	cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	NA|460aa|down_5|NC_008255.1_1154977_1156357_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|444aa|down_6|NC_008255.1_1156553_1157885_+	PRK09236, PRK09236, dihydroorotase; Reviewed	NA|215aa|down_7|NC_008255.1_1158255_1158900_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|167aa|down_8|NC_008255.1_1158899_1159400_-	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|138aa|down_9|NC_008255.1_1159856_1160270_+	NA
GCF_000014145.1_ASM1414v1	NC_008255	Cytophaga hutchinsonii ATCC 33406, complete sequence	2	1225876-1225965	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG,cas6,PD-DExK	Orphan	ATAGAGTAGTAAATGTTCTGTGTG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG,cas6,PD-DExK	NA,NA|206aa|down_0|NC_008255.1_1226003_1226621_-,NA|100aa|down_4|NC_008255.1_1231417_1231717_-	NA|828aa|up_9|NC_008255.1_1215847_1218331_+	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein	NA|435aa|up_8|NC_008255.1_1218701_1220006_-	TIGR02765, deoxyribodipyrimidine_photolyase, cryptochrome, DASH family	NA|522aa|up_7|NC_008255.1_1220005_1221571_-	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]	NA|51aa|up_6|NC_008255.1_1221560_1221713_-	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256)	NA|104aa|up_5|NC_008255.1_1221738_1222050_-	pfam00875, DNA_photolyase, DNA photolyase	NA|218aa|up_4|NC_008255.1_1222042_1222696_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|231aa|up_3|NC_008255.1_1222703_1223396_-	cd05233, SDR_c, classical (c) SDRs	NA|119aa|up_2|NC_008255.1_1223392_1223749_-	pfam10985, DUF2805, Protein of unknown function (DUF2805)	NA|240aa|up_1|NC_008255.1_1223886_1224606_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|301aa|up_0|NC_008255.1_1224678_1225581_+	cd01104, HTH_MlrA-CarA, Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA	NA|206aa|down_0|NC_008255.1_1226003_1226621_-	NA	NA|194aa|down_1|NC_008255.1_1226780_1227362_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|353aa|down_2|NC_008255.1_1227773_1228832_+	cd03505, Delta9-FADS-like, The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi	NA|668aa|down_3|NC_008255.1_1229195_1231199_-	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell	NA|100aa|down_4|NC_008255.1_1231417_1231717_-	NA	NA|216aa|down_5|NC_008255.1_1231898_1232546_-	cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants	NA|646aa|down_6|NC_008255.1_1233078_1235016_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|396aa|down_7|NC_008255.1_1235124_1236312_-	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins	NA|942aa|down_8|NC_008255.1_1236699_1239525_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|397aa|down_9|NC_008255.1_1239772_1240963_+	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV
GCF_000014145.1_ASM1414v1	NC_008255	Cytophaga hutchinsonii ATCC 33406, complete sequence	3	1585297-1585623	1	CRT	no	DEDDh	DEDDh,csa3,WYL,cas3,DinG,cas6,PD-DExK	Unclear	CTTTTTTNACNNCTTTNT	18	0	0	NA	NA	NA	6	6	Orphan	DEDDh,csa3,WYL,cas3,DinG,cas6,PD-DExK	NA|173aa|up_9|NC_008255.1_1576089_1576608_+,NA	NA|173aa|up_9|NC_008255.1_1576089_1576608_+	NA	NA|99aa|up_8|NC_008255.1_1576734_1577031_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|473aa|up_7|NC_008255.1_1577236_1578655_-	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|392aa|up_6|NC_008255.1_1579243_1580419_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|137aa|up_5|NC_008255.1_1580418_1580829_+	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|308aa|up_4|NC_008255.1_1580920_1581844_-	pfam01145, Band_7, SPFH domain / Band 7 family	NA|106aa|up_3|NC_008255.1_1582020_1582338_-	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein	NA|244aa|up_2|NC_008255.1_1582506_1583238_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|322aa|up_1|NC_008255.1_1583267_1584233_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|211aa|up_0|NC_008255.1_1584246_1584879_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|484aa|down_0|NC_008255.1_1585938_1587390_+	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family	NA|236aa|down_1|NC_008255.1_1587403_1588111_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|820aa|down_2|NC_008255.1_1588203_1590663_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|312aa|down_3|NC_008255.1_1590726_1591662_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|222aa|down_4|NC_008255.1_1591756_1592422_-	PRK10847, PRK10847, DedA family protein	NA|458aa|down_5|NC_008255.1_1592422_1593796_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|488aa|down_6|NC_008255.1_1593815_1595279_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|637aa|down_7|NC_008255.1_1595293_1597204_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|98aa|down_8|NC_008255.1_1597223_1597517_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|170aa|down_9|NC_008255.1_1597529_1598039_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J
