assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000014065.1_ASM1406v1	NC_008044	Ruegeria sp. TM1040, complete sequence	1	2396234-2396396	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	CCAATGGCGACGTCTACGAGGGCC	24	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,WYL,DEDDh	NA,NA|347aa|down_0|NC_008044.1_2397494_2398535_+	NA|226aa|up_9|NC_008044.1_2383854_2384532_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|235aa|up_8|NC_008044.1_2384584_2385289_+	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|843aa|up_7|NC_008044.1_2385285_2387814_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|155aa|up_6|NC_008044.1_2387828_2388293_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|190aa|up_5|NC_008044.1_2388396_2388966_+	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|395aa|up_4|NC_008044.1_2388962_2390147_+	pfam10011, DUF2254, Predicted membrane protein (DUF2254)	NA|442aa|up_3|NC_008044.1_2390225_2391551_-	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional	NA|313aa|up_2|NC_008044.1_2391779_2392718_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|434aa|up_1|NC_008044.1_2392714_2394016_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|553aa|up_0|NC_008044.1_2394153_2395812_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|347aa|down_0|NC_008044.1_2397494_2398535_+	NA	NA|508aa|down_1|NC_008044.1_2398531_2400055_-	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]	NA|528aa|down_2|NC_008044.1_2400414_2401998_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|419aa|down_3|NC_008044.1_2402079_2403336_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|364aa|down_4|NC_008044.1_2403546_2404638_+	TIGR01433, precursor_Cytochrome_o_subunit_2_Oxidase, cytochrome o ubiquinol oxidase subunit II	NA|679aa|down_5|NC_008044.1_2404641_2406678_+	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|215aa|down_6|NC_008044.1_2406681_2407326_+	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|116aa|down_7|NC_008044.1_2407322_2407670_+	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|244aa|down_8|NC_008044.1_2407666_2408398_+	COG3346, COG3346, Uncharacterized conserved protein [Function unknown]	NA|132aa|down_9|NC_008044.1_2408454_2408850_-	cd07233, GlxI_Zn, Glyoxalase I that uses Zn(++) as cofactor
GCF_000014065.1_ASM1406v1	NC_008044	Ruegeria sp. TM1040, complete sequence	2	2396648-2396741	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	CCAATGGCGACGTCTACGAGGGCC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA,NA|347aa|down_0|NC_008044.1_2397494_2398535_+	NA|226aa|up_9|NC_008044.1_2383854_2384532_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|235aa|up_8|NC_008044.1_2384584_2385289_+	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|843aa|up_7|NC_008044.1_2385285_2387814_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|155aa|up_6|NC_008044.1_2387828_2388293_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|190aa|up_5|NC_008044.1_2388396_2388966_+	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|395aa|up_4|NC_008044.1_2388962_2390147_+	pfam10011, DUF2254, Predicted membrane protein (DUF2254)	NA|442aa|up_3|NC_008044.1_2390225_2391551_-	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional	NA|313aa|up_2|NC_008044.1_2391779_2392718_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|434aa|up_1|NC_008044.1_2392714_2394016_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|553aa|up_0|NC_008044.1_2394153_2395812_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|347aa|down_0|NC_008044.1_2397494_2398535_+	NA	NA|508aa|down_1|NC_008044.1_2398531_2400055_-	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]	NA|528aa|down_2|NC_008044.1_2400414_2401998_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|419aa|down_3|NC_008044.1_2402079_2403336_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|364aa|down_4|NC_008044.1_2403546_2404638_+	TIGR01433, precursor_Cytochrome_o_subunit_2_Oxidase, cytochrome o ubiquinol oxidase subunit II	NA|679aa|down_5|NC_008044.1_2404641_2406678_+	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|215aa|down_6|NC_008044.1_2406681_2407326_+	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|116aa|down_7|NC_008044.1_2407322_2407670_+	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|244aa|down_8|NC_008044.1_2407666_2408398_+	COG3346, COG3346, Uncharacterized conserved protein [Function unknown]	NA|132aa|down_9|NC_008044.1_2408454_2408850_-	cd07233, GlxI_Zn, Glyoxalase I that uses Zn(++) as cofactor
GCF_000014065.1_ASM1406v1	NC_008044	Ruegeria sp. TM1040, complete sequence	3	2396855-2397016	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	CCAATGGCGACGTCTACGAGGGCC	24	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,WYL,DEDDh	NA,NA|347aa|down_0|NC_008044.1_2397494_2398535_+	NA|226aa|up_9|NC_008044.1_2383854_2384532_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|235aa|up_8|NC_008044.1_2384584_2385289_+	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|843aa|up_7|NC_008044.1_2385285_2387814_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|155aa|up_6|NC_008044.1_2387828_2388293_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|190aa|up_5|NC_008044.1_2388396_2388966_+	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|395aa|up_4|NC_008044.1_2388962_2390147_+	pfam10011, DUF2254, Predicted membrane protein (DUF2254)	NA|442aa|up_3|NC_008044.1_2390225_2391551_-	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional	NA|313aa|up_2|NC_008044.1_2391779_2392718_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|434aa|up_1|NC_008044.1_2392714_2394016_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|553aa|up_0|NC_008044.1_2394153_2395812_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|347aa|down_0|NC_008044.1_2397494_2398535_+	NA	NA|508aa|down_1|NC_008044.1_2398531_2400055_-	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]	NA|528aa|down_2|NC_008044.1_2400414_2401998_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|419aa|down_3|NC_008044.1_2402079_2403336_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|364aa|down_4|NC_008044.1_2403546_2404638_+	TIGR01433, precursor_Cytochrome_o_subunit_2_Oxidase, cytochrome o ubiquinol oxidase subunit II	NA|679aa|down_5|NC_008044.1_2404641_2406678_+	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|215aa|down_6|NC_008044.1_2406681_2407326_+	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|116aa|down_7|NC_008044.1_2407322_2407670_+	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|244aa|down_8|NC_008044.1_2407666_2408398_+	COG3346, COG3346, Uncharacterized conserved protein [Function unknown]	NA|132aa|down_9|NC_008044.1_2408454_2408850_-	cd07233, GlxI_Zn, Glyoxalase I that uses Zn(++) as cofactor
GCF_000014065.1_ASM1406v1	NC_008044	Ruegeria sp. TM1040, complete sequence	4	2801641-2801730	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	GGTTCCCACTTTTGCGCGACATGCTCTTGGT	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA,NA	NA|374aa|up_9|NC_008044.1_2791375_2792497_-	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|143aa|up_8|NC_008044.1_2792624_2793053_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|252aa|up_7|NC_008044.1_2793056_2793812_-	pfam03883, H2O2_YaaD, Peroxide stress protein YaaA	NA|680aa|up_6|NC_008044.1_2793913_2795953_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|96aa|up_5|NC_008044.1_2796081_2796369_-	pfam02325, YGGT, YGGT family	NA|193aa|up_4|NC_008044.1_2796503_2797082_+	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT)	NA|456aa|up_3|NC_008044.1_2797147_2798515_+	COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only]	NA|308aa|up_2|NC_008044.1_2798511_2799435_+	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed	NA|309aa|up_1|NC_008044.1_2799407_2800334_+	pfam13449, Phytase-like, Esterase-like activity of phytase	NA|211aa|up_0|NC_008044.1_2800488_2801121_+	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter	NA|140aa|down_0|NC_008044.1_2801737_2802157_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|341aa|down_1|NC_008044.1_2802297_2803320_+	COG3191, DmpA, L-aminopeptidase/D-esterase [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|321aa|down_2|NC_008044.1_2803832_2804795_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|207aa|down_3|NC_008044.1_2804810_2805431_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|306aa|down_4|NC_008044.1_2805427_2806345_+	PRK06141, PRK06141, ornithine cyclodeaminase family protein	NA|311aa|down_5|NC_008044.1_2806341_2807274_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|413aa|down_6|NC_008044.1_2807276_2808515_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|358aa|down_7|NC_008044.1_2808674_2809748_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|254aa|down_8|NC_008044.1_2809875_2810637_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|424aa|down_9|NC_008044.1_2810633_2811905_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]
