assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	1	414085-414169	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3	Orphan	ACTGCAGCGCGCAGCGCGGAGCTTATCC	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA	NA|223aa|up_9|NC_007948.1_405405_406074_+	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|305aa|up_8|NC_007948.1_406161_407076_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|379aa|up_7|NC_007948.1_407162_408299_-	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|348aa|up_6|NC_007948.1_408467_409511_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|239aa|up_5|NC_007948.1_409561_410278_+	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|184aa|up_4|NC_007948.1_410441_410993_-	pfam12276, DUF3617, Protein of unknown function (DUF3617)	NA|160aa|up_3|NC_007948.1_411089_411569_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|142aa|up_2|NC_007948.1_411640_412066_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|255aa|up_1|NC_007948.1_412467_413232_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|263aa|up_0|NC_007948.1_413269_414058_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|246aa|down_0|NC_007948.1_414170_414908_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|476aa|down_1|NC_007948.1_415042_416470_+	pfam02530, Porin_2, Porin subfamily	NA|114aa|down_2|NC_007948.1_416749_417091_+	PRK10739, PRK10739, YhgN family NAAT transporter	NA|990aa|down_3|NC_007948.1_417235_420205_+	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|389aa|down_4|NC_007948.1_420251_421418_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|162aa|down_5|NC_007948.1_421907_422393_+	pfam04008, Adenosine_kin, Adenosine specific kinase	NA|148aa|down_6|NC_007948.1_422607_423051_+	pfam10116, Host_attach, Protein required for attachment to host cells	NA|438aa|down_7|NC_007948.1_423690_425004_+	cd03895, M20_ArgE_DapE-like, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	NA|95aa|down_8|NC_007948.1_425029_425314_+	cd06982, cupin_BauB-like, Pseudomonas aeruginosa BauB and related proteins, cupin domain	NA|467aa|down_9|NC_007948.1_425326_426727_-	PRK07487, PRK07487, amidase; Provisional
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	2	876571-876693	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3	Orphan	GGGGCAGAGAGCGACACGCAGTGCGCGAACGTGGGGGCA	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA|92aa|up_8|NC_007948.1_868985_869261_+,NA|97aa|up_3|NC_007948.1_873415_873706_+,NA	NA|72aa|up_9|NC_007948.1_868675_868891_+	pfam03884, YacG, DNA gyrase inhibitor YacG	NA|92aa|up_8|NC_007948.1_868985_869261_+	NA	NA|110aa|up_7|NC_007948.1_869313_869643_-	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family	NA|288aa|up_6|NC_007948.1_869832_870696_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|374aa|up_5|NC_007948.1_870794_871916_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|427aa|up_4|NC_007948.1_872021_873302_-	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|97aa|up_3|NC_007948.1_873415_873706_+	NA	NA|281aa|up_2|NC_007948.1_873775_874618_-	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	NA|341aa|up_1|NC_007948.1_874614_875637_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|284aa|up_0|NC_007948.1_875688_876540_-	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE	NA|294aa|down_0|NC_007948.1_876696_877578_-	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA	NA|438aa|down_1|NC_007948.1_877676_878990_-	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|1301aa|down_2|NC_007948.1_879203_883106_+	pfam12447, DUF3683, Protein of unknown function (DUF3683)	NA|138aa|down_3|NC_007948.1_883203_883617_+	COG3536, COG3536, Uncharacterized protein conserved in bacteria [Function unknown]	NA|244aa|down_4|NC_007948.1_883754_884486_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|334aa|down_5|NC_007948.1_884554_885556_+	smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane	NA|202aa|down_6|NC_007948.1_885704_886310_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|518aa|down_7|NC_007948.1_886306_887860_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|122aa|down_8|NC_007948.1_888009_888375_+	TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB family	NA|209aa|down_9|NC_007948.1_888374_889001_+	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	3	977338-977459	3	CRISPRCasFinder	no	RT	DEDDh,WYL,cas3,RT,DinG,csa3	Unclear	GGGGGCAGCGCATTACACGAAGTGAAAAGCGTGGGGGCC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA|146aa|down_0|NC_007948.1_977692_978130_-,NA|207aa|down_1|NC_007948.1_978357_978978_-,NA|65aa|down_3|NC_007948.1_980166_980361_-,NA|70aa|down_4|NC_007948.1_980360_980570_-,NA|99aa|down_7|NC_007948.1_982029_982326_-	NA|854aa|up_9|NC_007948.1_964481_967043_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|147aa|up_8|NC_007948.1_967212_967653_+	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like	NA|367aa|up_7|NC_007948.1_967894_968995_+	pfam01734, Patatin, Patatin-like phospholipase	NA|222aa|up_6|NC_007948.1_969004_969670_-	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|225aa|up_5|NC_007948.1_969680_970355_-	PRK00024, PRK00024, DNA repair protein RadC	RT|570aa|up_4|NC_007948.1_970564_972274_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|158aa|up_3|NC_007948.1_973283_973757_+	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|334aa|up_2|NC_007948.1_973753_974755_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|314aa|up_1|NC_007948.1_974763_975705_+	PRK08246, PRK08246, serine/threonine dehydratase	NA|453aa|up_0|NC_007948.1_975879_977238_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|146aa|down_0|NC_007948.1_977692_978130_-	NA	NA|207aa|down_1|NC_007948.1_978357_978978_-	NA	NA|328aa|down_2|NC_007948.1_978993_979977_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|65aa|down_3|NC_007948.1_980166_980361_-	NA	NA|70aa|down_4|NC_007948.1_980360_980570_-	NA	NA|81aa|down_5|NC_007948.1_980566_980809_-	cd12204, CBD_like, Cellulose-binding domain, chitinase and related proteins	NA|358aa|down_6|NC_007948.1_980883_981957_-	pfam05065, Phage_capsid, Phage capsid family	NA|99aa|down_7|NC_007948.1_982029_982326_-	NA	NA|139aa|down_8|NC_007948.1_982326_982743_-	COG3747, COG3747, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|376aa|down_9|NC_007948.1_983094_984222_-	pfam13481, AAA_25, AAA domain
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	4	1656040-1656162	4	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3	Orphan	AGCACAGCCCCCTCGGGGGGCAGCGCAGTACACGAAGTG	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA	NA|213aa|up_9|NC_007948.1_1646815_1647454_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|252aa|up_8|NC_007948.1_1647505_1648261_-	TIGR02281, Uncharacterized_protein_RP867, clan AA aspartic protease, TIGR02281 family	NA|162aa|up_7|NC_007948.1_1648263_1648749_-	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed	NA|355aa|up_6|NC_007948.1_1648866_1649931_+	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase	NA|267aa|up_5|NC_007948.1_1649930_1650731_+	COG4278, COG4278, Uncharacterized conserved protein [Function unknown]	NA|447aa|up_4|NC_007948.1_1650756_1652097_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|109aa|up_3|NC_007948.1_1652124_1652451_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|235aa|up_2|NC_007948.1_1652662_1653367_-	PRK11280, PRK11280, hypothetical protein; Provisional	NA|117aa|up_1|NC_007948.1_1653581_1653932_-	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC	NA|330aa|up_0|NC_007948.1_1654161_1655151_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|256aa|down_0|NC_007948.1_1656871_1657639_+	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|162aa|down_1|NC_007948.1_1657658_1658144_+	pfam02674, Colicin_V, Colicin V production protein	NA|506aa|down_2|NC_007948.1_1658251_1659769_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|412aa|down_3|NC_007948.1_1659772_1661008_+	PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated	NA|463aa|down_4|NC_007948.1_1661004_1662393_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|304aa|down_5|NC_007948.1_1663295_1664207_+	COG4447, COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]	NA|260aa|down_6|NC_007948.1_1664747_1665527_+	pfam02633, Creatininase, Creatinine amidohydrolase	NA|386aa|down_7|NC_007948.1_1665688_1666846_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|293aa|down_8|NC_007948.1_1667337_1668216_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|88aa|down_9|NC_007948.1_1668370_1668634_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	5	2218314-2218404	5	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3	Orphan	GCTCACTGCGTGTAGCCTGTTCCCCCCTC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA	NA|185aa|up_9|NC_007948.1_2208133_2208688_-	cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|320aa|up_8|NC_007948.1_2208832_2209792_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_7|NC_007948.1_2209894_2210680_-	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|320aa|up_6|NC_007948.1_2210783_2211743_+	PRK09986, PRK09986, LysR family transcriptional regulator	NA|351aa|up_5|NC_007948.1_2211885_2212938_-	cd13665, PBP2_TRAP_Dctp3_4, Periplasmic substrate-binding component of TRAP-type C4-dicarboxylate transport system DctP3 and DctP4; the type 2 periplasmic-binding protein fold	NA|440aa|up_4|NC_007948.1_2213019_2214339_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|163aa|up_3|NC_007948.1_2214335_2214824_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|232aa|up_2|NC_007948.1_2215077_2215773_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|365aa|up_1|NC_007948.1_2215769_2216864_-	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase	NA|460aa|up_0|NC_007948.1_2216916_2218296_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|337aa|down_0|NC_007948.1_2218877_2219888_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|398aa|down_1|NC_007948.1_2219914_2221108_-	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|149aa|down_2|NC_007948.1_2221246_2221693_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|101aa|down_3|NC_007948.1_2221788_2222091_-	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|108aa|down_4|NC_007948.1_2222119_2222443_-	PLN02593, PLN02593, adrenodoxin-like ferredoxin protein	NA|496aa|down_5|NC_007948.1_2222462_2223950_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|485aa|down_6|NC_007948.1_2223955_2225410_-	cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)	NA|242aa|down_7|NC_007948.1_2225490_2226216_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|345aa|down_8|NC_007948.1_2226303_2227338_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|213aa|down_9|NC_007948.1_2227513_2228152_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	6	3110165-3110273	6	CRISPRCasFinder	no	DEDDh	DEDDh,WYL,cas3,RT,DinG,csa3	Unclear	ATGGCCCCCACGCTTGCCACTGCGT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA|123aa|down_7|NC_007948.1_3115610_3115979_+	NA|206aa|up_9|NC_007948.1_3099294_3099912_+	cd03196, GST_C_5, C-terminal, alpha helical domain of an unknown subfamily 5 of Glutathione S-transferases	DEDDh|481aa|up_8|NC_007948.1_3100203_3101646_-	PRK11779, sbcB, exonuclease I; Provisional	NA|779aa|up_7|NC_007948.1_3101795_3104132_-	TIGR02639, ATP-dependent_Clp_protease_subunit, ATP-dependent Clp protease ATP-binding subunit clpA	NA|123aa|up_6|NC_007948.1_3104202_3104571_-	pfam02617, ClpS, ATP-dependent Clp protease adaptor protein ClpS	NA|418aa|up_5|NC_007948.1_3104731_3105985_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|112aa|up_4|NC_007948.1_3106197_3106533_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|162aa|up_3|NC_007948.1_3106632_3107118_+	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|194aa|up_2|NC_007948.1_3107246_3107828_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|437aa|up_1|NC_007948.1_3107874_3109185_-	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|213aa|up_0|NC_007948.1_3109523_3110162_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|143aa|down_0|NC_007948.1_3110289_3110718_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|344aa|down_1|NC_007948.1_3110781_3111813_+	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed	NA|61aa|down_2|NC_007948.1_3111793_3111976_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_3|NC_007948.1_3112004_3112772_+	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|219aa|down_4|NC_007948.1_3112957_3113614_+	PRK00279, adk, adenylate kinase; Reviewed	NA|317aa|down_5|NC_007948.1_3113665_3114616_-	smart00870, Asparaginase, Asparaginase, found in various plant, animal and bacterial cells	NA|235aa|down_6|NC_007948.1_3114756_3115461_+	PRK00215, PRK00215, transcriptional repressor LexA	NA|123aa|down_7|NC_007948.1_3115610_3115979_+	NA	NA|336aa|down_8|NC_007948.1_3116172_3117180_+	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|506aa|down_9|NC_007948.1_3117772_3119290_+	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	7	3364748-3364873	7	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3	Orphan	CCCCCCGAGGGGGCTGAACTTGCTTGGGGCGGCCCGGC	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA|171aa|up_6|NC_007948.1_3359313_3359826_-,NA|127aa|up_1|NC_007948.1_3362920_3363301_-,NA	NA|347aa|up_9|NC_007948.1_3356904_3357945_+	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]	NA|258aa|up_8|NC_007948.1_3357983_3358757_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|161aa|up_7|NC_007948.1_3358813_3359296_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|171aa|up_6|NC_007948.1_3359313_3359826_-	NA	NA|409aa|up_5|NC_007948.1_3359866_3361093_-	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_4|NC_007948.1_3361107_3361632_+	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|165aa|up_3|NC_007948.1_3361748_3362243_-	PRK11280, PRK11280, hypothetical protein; Provisional	NA|149aa|up_2|NC_007948.1_3362477_3362924_-	PRK00601, dut, dUTP diphosphatase	NA|127aa|up_1|NC_007948.1_3362920_3363301_-	NA	NA|429aa|up_0|NC_007948.1_3363402_3364689_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|564aa|down_0|NC_007948.1_3365026_3366718_+	PRK05380, pyrG, CTP synthetase; Validated	NA|286aa|down_1|NC_007948.1_3366720_3367578_+	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|97aa|down_2|NC_007948.1_3367580_3367871_+	pfam07045, DUF1330, Domain of unknown function (DUF1330)	NA|428aa|down_3|NC_007948.1_3367915_3369199_+	PRK00077, eno, enolase; Provisional	NA|92aa|down_4|NC_007948.1_3369236_3369512_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|172aa|down_5|NC_007948.1_3369590_3370106_+	pfam13236, CLU, Clustered mitochondria	NA|323aa|down_6|NC_007948.1_3370136_3371105_-	pfam01430, HSP33, Hsp33 protein	NA|175aa|down_7|NC_007948.1_3371268_3371793_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|274aa|down_8|NC_007948.1_3371900_3372722_+	pfam04305, DUF455, Protein of unknown function (DUF455)	NA|421aa|down_9|NC_007948.1_3372797_3374060_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	8	3864041-3864152	8	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3	Orphan	GTTGGCCCCCACGCTTGTCGCTTCGCGT	28	1	1	3864069-3864124	NC_007948.1_264746-264691	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA|77aa|down_3|NC_007948.1_3869385_3869616_+	NA|61aa|up_9|NC_007948.1_3851800_3851983_-	PRK01110, rpmF, 50S ribosomal protein L32; Validated	NA|169aa|up_8|NC_007948.1_3852216_3852723_-	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]	NA|195aa|up_7|NC_007948.1_3852856_3853441_+	PRK02141, PRK02141, Maf-like protein; Reviewed	NA|256aa|up_6|NC_007948.1_3853437_3854205_+	cd11649, RsmI_like, uncharacterized subfamily of the tetrapyrrole methylase family similar to Ribosomal RNA small subunit methyltransferase I (RsmI)	NA|362aa|up_5|NC_007948.1_3854307_3855393_-	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|122aa|up_4|NC_007948.1_3855414_3855780_-	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]	NA|220aa|up_3|NC_007948.1_3855813_3856473_-	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans  HAD-superfamily hydrolase, subfamily IA, variant 1	NA|379aa|up_2|NC_007948.1_3856524_3857661_-	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|1042aa|up_1|NC_007948.1_3858351_3861477_+	PRK10811, rne, ribonuclease E; Reviewed	NA|430aa|up_0|NC_007948.1_3861676_3862966_-	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein	NA|291aa|down_0|NC_007948.1_3864300_3865173_-	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|325aa|down_1|NC_007948.1_3865186_3866161_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|923aa|down_2|NC_007948.1_3866369_3869138_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|77aa|down_3|NC_007948.1_3869385_3869616_+	NA	NA|1614aa|down_4|NC_007948.1_3873160_3878002_+	COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism]	NA|260aa|down_5|NC_007948.1_3878068_3878848_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|391aa|down_6|NC_007948.1_3879099_3880272_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|247aa|down_7|NC_007948.1_3880472_3881213_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|353aa|down_8|NC_007948.1_3881209_3882268_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|470aa|down_9|NC_007948.1_3882529_3883939_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	9	4082022-4082158	9	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3	Orphan	GGGGGCGACACCTGCGGCCCGGCAAAGCCGGTTCCGCGATG	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA|446aa|down_5|NC_007948.1_4087513_4088851_-,NA|249aa|down_6|NC_007948.1_4088885_4089632_-,NA|193aa|down_7|NC_007948.1_4089669_4090248_-	NA|436aa|up_9|NC_007948.1_4071038_4072346_-	pfam11902, DUF3422, Protein of unknown function (DUF3422)	NA|505aa|up_8|NC_007948.1_4072457_4073972_-	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|up_7|NC_007948.1_4073980_4074469_-	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|604aa|up_6|NC_007948.1_4074651_4076463_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|256aa|up_5|NC_007948.1_4076518_4077286_-	PRK04457, PRK04457, polyamine aminopropyltransferase	NA|166aa|up_4|NC_007948.1_4077285_4077783_-	cd10032, UDG-F6_HDG, Uracil DNA glycosylase family 6, includes hypoxanthine-DNA glycosylase and similar proteins	NA|288aa|up_3|NC_007948.1_4077827_4078691_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|359aa|up_2|NC_007948.1_4078857_4079934_+	cd13587, PBP2_polyamine_2, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold	NA|369aa|up_1|NC_007948.1_4079955_4081062_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|302aa|up_0|NC_007948.1_4081067_4081973_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|287aa|down_0|NC_007948.1_4082220_4083081_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|318aa|down_1|NC_007948.1_4083285_4084239_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|345aa|down_2|NC_007948.1_4084248_4085283_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|364aa|down_3|NC_007948.1_4085263_4086355_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|347aa|down_4|NC_007948.1_4086394_4087435_+	PRK13685, PRK13685, hypothetical protein; Provisional	NA|446aa|down_5|NC_007948.1_4087513_4088851_-	NA	NA|249aa|down_6|NC_007948.1_4088885_4089632_-	NA	NA|193aa|down_7|NC_007948.1_4089669_4090248_-	NA	NA|92aa|down_8|NC_007948.1_4090277_4090553_-	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ	NA|1004aa|down_9|NC_007948.1_4091077_4094089_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	10	4888662-4888784	10	CRISPRCasFinder	no	RT	DEDDh,WYL,cas3,RT,DinG,csa3	Unclear	GGGGCTGAACTTGCTCGGGGCGGCCCTTCGCGGCGTTCG	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA	NA|240aa|up_9|NC_007948.1_4875339_4876059_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|638aa|up_8|NC_007948.1_4876062_4877976_-	COG3850, NarQ, Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]	NA|375aa|up_7|NC_007948.1_4877980_4879105_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	RT|586aa|up_6|NC_007948.1_4879177_4880935_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|366aa|up_5|NC_007948.1_4882151_4883249_+	PRK07589, PRK07589, ornithine cyclodeaminase; Validated	NA|305aa|up_4|NC_007948.1_4883245_4884160_+	cd09989, Arginase, Arginase family	NA|169aa|up_3|NC_007948.1_4884186_4884693_-	COG2980, RlpB, Rare lipoprotein B [Cell envelope biogenesis, outer membrane]	NA|887aa|up_2|NC_007948.1_4884739_4887400_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|143aa|up_1|NC_007948.1_4887540_4887969_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|215aa|up_0|NC_007948.1_4887995_4888640_-	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|272aa|down_0|NC_007948.1_4888791_4889607_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|186aa|down_1|NC_007948.1_4889615_4890173_-	pfam04355, SmpA_OmlA, SmpA / OmlA family	NA|153aa|down_2|NC_007948.1_4890278_4890737_+	PRK09462, fur, ferric uptake regulator; Provisional	NA|317aa|down_3|NC_007948.1_4890940_4891891_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|158aa|down_4|NC_007948.1_4891932_4892406_-	TIGR01419, nitro_reg_IIA, PTS IIA-like nitrogen-regulatory protein PtsN	NA|110aa|down_5|NC_007948.1_4892595_4892925_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|409aa|down_6|NC_007948.1_4893476_4894703_+	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|329aa|down_7|NC_007948.1_4894901_4895888_+	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup	NA|272aa|down_8|NC_007948.1_4895980_4896796_-	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	RT|586aa|down_9|NC_007948.1_4896910_4898668_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	11	4983508-4983639	11	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3	Orphan	GTCTCGGCTCACTGCGTGTAGCCGGAACCCCCTCAAGGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA	NA|378aa|up_9|NC_007948.1_4972541_4973675_-	PRK09354, recA, recombinase A; Provisional	NA|161aa|up_8|NC_007948.1_4973882_4974365_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|224aa|up_7|NC_007948.1_4974626_4975298_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|482aa|up_6|NC_007948.1_4975536_4976982_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|286aa|up_5|NC_007948.1_4977011_4977869_-	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|190aa|up_4|NC_007948.1_4977858_4978428_-	TIGR03276, Phn-HD, phosphonate degradation operons associated HDIG domain protein	NA|474aa|up_3|NC_007948.1_4978640_4980062_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|405aa|up_2|NC_007948.1_4980239_4981454_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase	NA|265aa|up_1|NC_007948.1_4981467_4982262_-	TIGR03338, phnR_burk, phosphonate utilization associated transcriptional regulator	NA|350aa|up_0|NC_007948.1_4982450_4983500_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|347aa|down_0|NC_007948.1_4983726_4984767_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|569aa|down_1|NC_007948.1_4984766_4986473_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|373aa|down_2|NC_007948.1_4986839_4987958_+	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|461aa|down_3|NC_007948.1_4987995_4989378_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|187aa|down_4|NC_007948.1_4989389_4989950_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|378aa|down_5|NC_007948.1_4989946_4991080_+	cd14861, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|273aa|down_6|NC_007948.1_4991297_4992116_+	cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|458aa|down_7|NC_007948.1_4992112_4993486_+	cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of Synechococcus sp	NA|223aa|down_8|NC_007948.1_4993797_4994466_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|129aa|down_9|NC_007948.1_4994622_4995009_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold
GCF_000013865.1_ASM1386v1	NC_007948	Polaromonas sp. JS666, complete genome	12	5174538-5174647	12	CRISPRCasFinder	no	RT	DEDDh,WYL,cas3,RT,DinG,csa3	Unclear	TGGCCCCCACGCTTGTCGCTTCGCGT	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,PD-DExK,c2c9_V-U4	NA,NA	NA|218aa|up_9|NC_007948.1_5164538_5165192_+	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|274aa|up_8|NC_007948.1_5165199_5166021_-	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]	NA|225aa|up_7|NC_007948.1_5166026_5166701_-	PRK08130, PRK08130, putative aldolase; Validated	NA|428aa|up_6|NC_007948.1_5166773_5168057_-	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown]	NA|340aa|up_5|NC_007948.1_5168056_5169076_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|431aa|up_4|NC_007948.1_5169153_5170446_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|171aa|up_3|NC_007948.1_5170603_5171116_-	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|323aa|up_2|NC_007948.1_5171157_5172126_-	cd13675, PBP2_TRAP_SBP_like_5, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|299aa|up_1|NC_007948.1_5172172_5173069_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|259aa|up_0|NC_007948.1_5173254_5174031_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|457aa|down_0|NC_007948.1_5176242_5177613_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|284aa|down_1|NC_007948.1_5177609_5178461_-	pfam09828, Chrome_Resist, Chromate resistance exported protein	NA|195aa|down_2|NC_007948.1_5178642_5179227_-	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW	NA|414aa|down_3|NC_007948.1_5179247_5180489_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|188aa|down_4|NC_007948.1_5180666_5181230_-	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|401aa|down_5|NC_007948.1_5181598_5182801_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|189aa|down_6|NC_007948.1_5182893_5183460_+	PRK12520, PRK12520, RNA polymerase sigma factor; Provisional	NA|84aa|down_7|NC_007948.1_5183515_5183767_+	pfam13490, zf-HC2, Putative zinc-finger	NA|152aa|down_8|NC_007948.1_5184446_5184902_+	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|259aa|down_9|NC_007948.1_5185139_5185916_-	PRK07024, PRK07024, SDR family oxidoreductase
