assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013805.1_ASM1380v1	NC_008149	Yersinia pestis Nepal516, complete sequence	1	56389-56501	1	CRISPRCasFinder	no		csa3,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|79aa|up_9|NC_008149.1_45429_45666_+,NA|93aa|up_5|NC_008149.1_49743_50022_+,NA	NA|79aa|up_9|NC_008149.1_45429_45666_+	NA	NA|370aa|up_8|NC_008149.1_45669_46779_+	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA|424aa|up_7|NC_008149.1_46849_48121_+	PRK09360, lamB, maltoporin LamB	NA|304aa|up_6|NC_008149.1_48361_49273_+	PRK10564, PRK10564, maltose operon protein MalM	NA|93aa|up_5|NC_008149.1_49743_50022_+	NA	NA|173aa|up_4|NC_008149.1_50173_50692_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|166aa|up_3|NC_008149.1_51215_51713_+	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|494aa|up_2|NC_008149.1_51780_53262_+	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|147aa|up_1|NC_008149.1_53268_53709_+	COG3518, COG3518, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|452aa|up_0|NC_008149.1_54824_56179_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|879aa|down_0|NC_008149.1_56920_59557_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|388aa|down_1|NC_008149.1_59930_61094_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|NC_008149.1_61344_62349_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|259aa|down_3|NC_008149.1_62514_63291_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|NC_008149.1_63457_64831_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|NC_008149.1_65429_67922_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|NC_008149.1_68143_68761_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|NC_008149.1_68926_70735_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|NC_008149.1_70810_72139_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|NC_008149.1_72203_73007_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCF_000013805.1_ASM1380v1	NC_008149	Yersinia pestis Nepal516, complete sequence	2	1221364-1221633	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	1	1	1221574-1221605	NC_008149.1_1788909-1788940	I-F:I-F:I-F	3,4,4	4	Orphan	csa3,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|80aa|up_9|NC_008149.1_1206786_1207026_+,NA|84aa|up_8|NC_008149.1_1207064_1207316_+,NA	NA|80aa|up_9|NC_008149.1_1206786_1207026_+	NA	NA|84aa|up_8|NC_008149.1_1207064_1207316_+	NA	NA|191aa|up_7|NC_008149.1_1207339_1207912_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|134aa|up_6|NC_008149.1_1207923_1208325_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|134aa|up_5|NC_008149.1_1208557_1208959_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|82aa|up_4|NC_008149.1_1210480_1210726_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|771aa|up_3|NC_008149.1_1210938_1213251_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|153aa|up_2|NC_008149.1_1213496_1213955_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1993aa|up_1|NC_008149.1_1214069_1220048_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NC_008149.1_1220454_1221003_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NC_008149.1_1221636_1222491_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|509aa|down_1|NC_008149.1_1222828_1224355_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|642aa|down_2|NC_008149.1_1224389_1226315_+	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|310aa|down_3|NC_008149.1_1227719_1228649_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_4|NC_008149.1_1228697_1230245_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_5|NC_008149.1_1230256_1231285_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_6|NC_008149.1_1231308_1232442_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_7|NC_008149.1_1232473_1234444_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|353aa|down_8|NC_008149.1_1234458_1235517_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_9|NC_008149.1_1235526_1236342_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
GCF_000013805.1_ASM1380v1	NC_008149	Yersinia pestis Nepal516, complete sequence	3	2711070-2711279	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	csa3,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,AGGTTCACTGCCGCACAGGCAGCTTAGAAAAT	28,28,32	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	csa3,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA|38aa|down_5|NC_008149.1_2717796_2717910_+,NA|16aa|down_8|NC_008149.1_2719568_2719616_+	NA|426aa|up_9|NC_008149.1_2696630_2697908_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_8|NC_008149.1_2697939_2698782_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_7|NC_008149.1_2698829_2699570_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_6|NC_008149.1_2699997_2700420_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_5|NC_008149.1_2700428_2701733_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1051aa|up_4|NC_008149.1_2702757_2705910_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|403aa|up_3|NC_008149.1_2705872_2707081_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_2|NC_008149.1_2707451_2707769_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NC_008149.1_2708202_2709312_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NC_008149.1_2709604_2711035_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NC_008149.1_2711771_2713163_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NC_008149.1_2713622_2714714_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|298aa|down_2|NC_008149.1_2714999_2715893_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|230aa|down_3|NC_008149.1_2715850_2716540_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_4|NC_008149.1_2716536_2717532_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|38aa|down_5|NC_008149.1_2717796_2717910_+	NA	NA|97aa|down_6|NC_008149.1_2717920_2718211_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_7|NC_008149.1_2718365_2719193_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_8|NC_008149.1_2719568_2719616_+	NA	NA|300aa|down_9|NC_008149.1_2719898_2720798_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed
GCF_000013805.1_ASM1380v1	NC_008149	Yersinia pestis Nepal516, complete sequence	4	2836931-2837052	4	CRISPRCasFinder	no		csa3,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	CAATTGATTATATCGATTAATATTGGCATTAAG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|73aa|up_0|NC_008149.1_2836355_2836574_-,NA	NA|83aa|up_9|NC_008149.1_2829231_2829480_-	PRK07117, PRK07117, acyl carrier protein; Validated	NA|147aa|up_8|NC_008149.1_2829517_2829958_-	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|263aa|up_7|NC_008149.1_2830044_2830833_-	cd05233, SDR_c, classical (c) SDRs	NA|251aa|up_6|NC_008149.1_2830835_2831588_-	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|240aa|up_5|NC_008149.1_2831589_2832309_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|413aa|up_4|NC_008149.1_2832301_2833540_-	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|246aa|up_3|NC_008149.1_2833555_2834293_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|428aa|up_2|NC_008149.1_2834294_2835578_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|175aa|up_1|NC_008149.1_2835567_2836092_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|73aa|up_0|NC_008149.1_2836355_2836574_-	NA	NA|249aa|down_0|NC_008149.1_2837304_2838051_+	PRK06172, PRK06172, SDR family oxidoreductase	NA|806aa|down_1|NC_008149.1_2838204_2840622_+	pfam01565, FAD_binding_4, FAD binding domain	NA|110aa|down_2|NC_008149.1_2844267_2844597_+	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|93aa|down_3|NC_008149.1_2844648_2844927_-	PRK14426, PRK14426, acylphosphatase; Provisional	NA|397aa|down_4|NC_008149.1_2845020_2846211_+	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|106aa|down_5|NC_008149.1_2846271_2846589_+	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|139aa|down_6|NC_008149.1_2846697_2847114_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|227aa|down_7|NC_008149.1_2847429_2848110_+	PRK03641, PRK03641, DUF2057 family protein	NA|155aa|down_8|NC_008149.1_2848288_2848753_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|685aa|down_9|NC_008149.1_2848813_2850868_-	PRK11054, helD, DNA helicase IV; Provisional
